mRNA_Ecto-sp13_S_contig14764.3638.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14764.3638.1
Unique NamemRNA_Ecto-sp13_S_contig14764.3638.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14764.3638.1 vs. uniprot
Match: D7FXV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV8_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.080e-28
Identity = 73/106 (68.87%), Postives = 74/106 (69.81%), Query Frame = 2 
Query:    2 STPPFTLSPLPEGTTTPATVAXXXXXXXXXXXXXXXXXXXXXXXGAIAAVVLLVKTGRLKRCGNDNSSEPSPGVGSITAAAPSATSRAMEETQLPAAAQYPEALHT 319
            STPPFTLSPLPEGTTTPATVA                       GAIAAVVLL KTGRLK CGNDNSSEPSPGVGSI A APSATS A+  TQLPAA QYPEAL T
Sbjct:  330 STPPFTLSPLPEGTTTPATVASSGGGDTSTMSVVAGAVGGGLVVGAIAAVVLLFKTGRLKPCGNDNSSEPSPGVGSIPAGAPSATSSAIAGTQLPAAMQYPEALRT 435
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BLAST of mRNA_Ecto-sp13_S_contig14764.3638.1 vs. uniprot
Match: A0A6H5K4G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.260e-14
Identity = 58/105 (55.24%), Postives = 61/105 (58.10%), Query Frame = 2 
Query:    2 STPPFTLSPLPEGTTTPATVAXXXXXXXXXXXXXXXXXXXXXXXGAIAAVVLLVKTGRLKRCGNDNSSEPSPGVGSITAAA-PSATSRAMEETQLPAAAQYPEAL 313
            ST PFT SPLP+ TTTPATVA                       GAIA ++LL KTGRLK C N NS  PSPGVG I AAA PSA   A    QLPAA QYPEAL
Sbjct:  271 STSPFTPSPLPDITTTPATVASSGGGFGGGLVV-----------GAIAILILLFKTGRLKHCRNGNSHGPSPGVGQIPAAAGPSAMESARRGMQLPAAIQYPEAL 364
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BLAST of mRNA_Ecto-sp13_S_contig14764.3638.1 vs. uniprot
Match: D7FYB8_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.770e-12
Identity = 52/103 (50.49%), Postives = 58/103 (56.31%), Query Frame = 2 
Query:   14 FTLSPLPEGTTTPATVAXXXXXXXXXXXXXXXXXXXXXXXGAI--AAVVLLVKTGRLKRCGNDNSSEPSPGVGSITAAAPSATSRAMEETQLPAAAQYPEALH 316
             TLSPL +GTT PAT+A                      X      AVV+L KTGRLK C +   + PSPG+GSI AAAPSATS AME  QLP A QYPE LH
Sbjct:  172 LTLSPLLDGTTAPATIASSGRGDSDSATVGLVAGVLGVGXXXXXXGAVVVLFKTGRLKSCRHGTPNGPSPGMGSIPAAAPSATSSAMEGIQLPPAIQYPEVLH 274
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BLAST of mRNA_Ecto-sp13_S_contig14764.3638.1 vs. uniprot
Match: D7G7I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.330e-11
Identity = 53/105 (50.48%), Postives = 58/105 (55.24%), Query Frame = 2 
Query:    2 STPPFTLSPLPEGTTTPATVAXXXXXXXXXXXXXXXXXXXXXXXGAIAAVVLLVKTGRLKRCGNDNSSEPSPGVGSITAAA-PSATSRAMEETQLPAAAQYPEAL 313
            ST PFT  PLP+ TTTPATVA                       GAIA ++LL KTGRLK C N +S   S GVG I AAA PSA   A    Q+PAA QYPEAL
Sbjct:  236 STSPFTPPPLPDITTTPATVASSGGGDPSTMSVVAVAVGGGLVVGAIATLILLFKTGRLKHCRNGSSHGTSRGVGPIPAAAGPSAMESARRGMQIPAAIQYPEAL 340
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BLAST of mRNA_Ecto-sp13_S_contig14764.3638.1 vs. uniprot
Match: A0A6H5JTE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.780e-7
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 2 
Query:  194 DNSSEPSPGVGSITAAAPSATSRAMEETQLPAAAQYPEALHT 319
            D+  + +PGVGSI A+APSATSRAME TQLPAA QYPEALHT
Sbjct:  107 DDMVDDNPGVGSIPASAPSATSRAMEGTQLPAAMQYPEALHT 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14764.3638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXV8_ECTSI3.080e-2868.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4G7_9PHAE6.260e-1455.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYB8_ECTSI2.770e-1250.49Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G7I5_ECTSI1.330e-1150.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTE7_9PHAE2.780e-776.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14764contigEcto-sp13_S_contig14764:2473..3722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size893
Hectar predicted targeting categorysignal peptide
Exons2
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.5540245-UTR-Ecto-sp13_S_contig14764:2472..25521681462787.5540245-UTR-Ecto-sp13_S_contig14764:2472..2552Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14764 2473..2552 +
1681462787.5627382-UTR-Ecto-sp13_S_contig14764:2909..29201681462787.5627382-UTR-Ecto-sp13_S_contig14764:2909..2920Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14764 2910..2920 +
1681462787.5789154-UTR-Ecto-sp13_S_contig14764:3151..37221681462787.5789154-UTR-Ecto-sp13_S_contig14764:3151..3722Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14764 3152..3722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.5708406-CDS-Ecto-sp13_S_contig14764:2920..31511681462787.5708406-CDS-Ecto-sp13_S_contig14764:2920..3151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14764 2921..3151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14764.3638.1prot_Ecto-sp13_S_contig14764.3638.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14764 2921..3151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14764.3638.1

>prot_Ecto-sp13_S_contig14764.3638.1 ID=prot_Ecto-sp13_S_contig14764.3638.1|Name=mRNA_Ecto-sp13_S_contig14764.3638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MSIVAGAVGGGLVVGAIAAVVLLVKTGRLKRCGNDNSSEPSPGVGSITAA
APSATSRAMEETQLPAAAQYPEALHT*
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mRNA from alignment at Ecto-sp13_S_contig14764:2473..3722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14764.3638.1 ID=mRNA_Ecto-sp13_S_contig14764.3638.1|Name=mRNA_Ecto-sp13_S_contig14764.3638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1250bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14764:2473..3722+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTACTCCCCCTTTCACCCTGTCCCCGCTTCCTGAAGGCACGACTACTC
CGGCGACGGTCGCCTCATCTGGTGGAGGAGGTCAGAATACGTGACATGGA
TATTGATCGGTAACCGACATAGACACTGTTCTAATACGAACAGTTCCTTT
GCCAACACTGTGTGTCCTGCGAAAGCAGTCGCGAAGCGTGAGAAATCCAG
TCGACGGGCAATGTTGCGATTTCATTTTCCCAAGAAATGACCCAAGTACC
GTAGTGTCTTTGGTTTCACCGTTCCGTTTGCGTTCATCTTGTAGCCAAGT
ATTTTCCATTGCATGAGGACTCGTACAACCAACAGAGGGAGACGAAAGAA
CTCTCCACTGACGAGTCTTTCCGCGACCGTGCTACCTATCTCTCGGTGAT
ACATTTGCTCGTTCTTCGATGTTACTCTTACTCTCAGAAACTTCCACAAT
GAGTATTGTAGCCGGTGCGGTGGGAGGCGGGCTAGTCGTCGGGGCGATCG
CGGCGGTAGTTCTGCTGGTCAAGACTGGCCGCCTTAAGCGTTGCGGGAAC
GACAACTCAAGCGAGCCTTCGCCTGGGGTGGGATCGATAACCGCTGCTGC
ACCCTCTGCCACGAGCAGGGCAATGGAGGAGACTCAGCTTCCGGCCGCAG
CGCAGTACCCTGAGGCTCTACATACGTAGCACGGGACGCTCCTACCGCAC
CAACAGACGGCAGAATATCATCACGTTGTGGATTTATCTTGTTGTAGTAG
TCGGCATTCGGCACCCTCCACATGTAGTAAAGGGCACGGTAATCGGGCAT
ATCTCCGCGTCAGACGATGTTCGCGACGGCACGCAACCGTTAACGGCAAC
GCCTTTCGAACGGTGTTGAGCACTGTGGAGTTTTGTTGATACAATCTTCT
TGTGTATCTTACCAGAACTGGTTGGAGTTCACCTTACTTTTTGACAACTA
GACTAAAATAGACCAGCCCGACTCAAAGTAGCGTCGTTCGTGAAACAGGC
CACCAAGGTGGGGTCGACCTACTGCGTTGATGGTGATCATCGCTTGTGTC
CTGACCGTATTAGACGTCATTAAGTCGCACCTTGTAACGTTACAACTTGT
ACCAAGGTATAACTGTTGGAGCCGGCAAAATGTGGGAACGAAAAACATCA
AATCGAACAATTCGAAATACTGCTGTACCGCTCGCTGTTGTGTAGACTAC
TCTTAGGAAAAACACACCCACTTGCCGATATTCATCAGACTATTTGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14764:2473..3722+

>mRNA_Ecto-sp13_S_contig14764.3638.1 ID=mRNA_Ecto-sp13_S_contig14764.3638.1|Name=mRNA_Ecto-sp13_S_contig14764.3638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14764:2473..3722+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTATTGTAGCCGGTGCGGTGGGAGGCGGGCTAGTCGTCGGGGCGAT
CGCGGCGGTAGTTCTGCTGGTCAAGACTGGCCGCCTTAAGCGTTGCGGGA
ACGACAACTCAAGCGAGCCTTCGCCTGGGGTGGGATCGATAACCGCTGCT
GCACCCTCTGCCACGAGCAGGGCAATGGAGGAGACTCAGCTTCCGGCCGC
AGCGCAGTACCCTGAGGCTCTACATACGTAG
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