mRNA_Ecto-sp13_S_contig14762.3637.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14762.3637.1
Unique NamemRNA_Ecto-sp13_S_contig14762.3637.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: A0A6H5L1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 2.880e-114
Identity = 169/227 (74.45%), Postives = 203/227 (89.43%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V ESTQESL R++ LQAPNY YPRLVVVKE+ S   +S+A GKK++LSK R + KK+M LHFLCPV+M+KVPCGYGGEGYRF+ETR WVKKISPVLQVA VTAKVAL ATTGLDV+ S+FL+D+KDGLV++LVDRTLDE  LLR +SG++D+GA++Q+DTRASYEALKKFMDKEQVDR+KNARDGDGY+DFRD+MKRV+DGRGGMVW+RN+NVQ+WL  HS  +P+R
Sbjct:   71 VLESTQESLMRIRHLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSLLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 296          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 6.960e-111
Identity = 180/227 (79.30%), Postives = 199/227 (87.67%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V ++TQE L RLK+LQAPNYLYPRLV V+E+ SG   SRA G K +LSK RGV KKEM+LHFLCPV+M+KVPCGYGGEGYRFRETR WVKKISPVLQVA VTAKVAL AT GL+VN S+FL+D+KDGL D+LVDR+LDED LLRV+SGEEDV ADMQ DTRASYEALKK MDKEQV RLKNARDGDGY+DFRDKMKRV DGRGGMVW+RNENVQRWL  HSN +PSR
Sbjct: 1019 VFKNTQEILMRLKNLQAPNYLYPRLVAVEEVASGSTPSRAHGMKRVLSKLRGVGKKEMVLHFLCPVDMTKVPCGYGGEGYRFRETRGWVKKISPVLQVAVVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTAPSR 1245          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 1.680e-110
Identity = 169/227 (74.45%), Postives = 205/227 (90.31%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V ESTQESL R+++LQAPNY YPRLVVVKE+ S   +S+A GKK++LSK R + KK+M LHFLCPV+M+KVPCGYGGEGYRF+ETR WVKKISPVLQVA VTA+VAL ATTGLDVN S+FL+D+KDGLV++LVDRTLDE+ LLR +SG++D+GA++Q+DTRASYEALKKFMDKEQVDR+KNARDGDGY+DFRD+MKRV+DGRGGMVW+RN+NVQ+WL  HS  +P+R
Sbjct:  571 VLESTQESLMRIRNLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 797          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 1.770e-107
Identity = 166/227 (73.13%), Postives = 205/227 (90.31%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V EST+ESL R+++LQAPNY YPRLVVVKE+ +   +S+A GKK++LSK R + KK+M LHFLCPV+M+KVPCGYGGEGYRF+ETR WVKKISPVLQVA VTAKVAL ATTGLDV+ S+FL+D+KDGLV++LVDRT+DE+ LLR +SG++D+GA++Q+DTRASYEALKKFMDKEQVDR+KNARDGDGY+DFRD+MKRV+DGRGGMVW+RN+NVQ+WL  HS  +P+R
Sbjct:  739 VLESTKESLMRIRNLQAPNYRYPRLVVVKEVGADGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 965          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 2.480e-106
Identity = 167/227 (73.57%), Postives = 201/227 (88.55%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V ESTQESL R++ LQAPNY YPRLVVVKE+ S   +S+A GKK++LSK R + KK+M LHFLCPV+M+KVPCGYGGEGYRF+ETR WVKKISPVLQVA VTAKVAL ATTGLDV+ S+FL+D+KDGLV++LVDRTLDE  LLR +SG++D+GA++Q DTRASYEALKKFMD+EQVDR+KNARDGDGY+D RD+MKRV+DGRGGMVW+RN+NVQ+WL  HS  +P+R
Sbjct:  515 VLESTQESLMRIRHLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSLLSKLRLLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQTDTRASYEALKKFMDQEQVDRVKNARDGDGYIDLRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 740          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: A0A6H5KSY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 4.590e-104
Identity = 164/228 (71.93%), Postives = 195/228 (85.53%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNIL-SKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V ES+QESL RLKDLQA NY YPRLV+VKE      SS+A+G K  L +KFRGV KK+M LHFLCPV+M+KVPCGYGGEGYRF+ETRDWVKKISPVLQVA VTAKVAL ATTGL+V+ SDFL+D+KDGLV++LVDRTLDED LLR + GE+ +GADMQ+DTRASYEALK FM+ E+  R KNARDGDGY+DFR++MKRV++GRGGMVW+RN+NVQ+WL   S  +P+R
Sbjct:  294 VLESSQESLMRLKDLQALNYRYPRLVIVKEAGICGRSSKATGWKRFLPNKFRGVGKKDMALHFLCPVDMTKVPCGYGGEGYRFQETRDWVKKISPVLQVAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVLGEDSIGADMQRDTRASYEALKVFMENEERRRRKNARDGDGYIDFREEMKRVTNGRGGMVWVRNDNVQKWLESRSTAAPTR 521          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 5.460e-102
Identity = 164/227 (72.25%), Postives = 199/227 (87.67%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V ESTQESL RL+DLQAPNY YPRLVVVKE+ S   +S+A G+K++LSK  GV KK+M L FLCPV+M++VPCGYGGEGYRF+ETR WVKKISPVLQVA VTAKVAL ATTGL V+ SDFL+D+KDGLV++LVDRTLD++ LLR + G++++GAD+Q+DTRASYEALKKFMDKEQ++R+KN RDGDGY+DFRD+MKRV DGRGGMVW+RNENVQ+WL   S  +P+R
Sbjct: 1086 VLESTQESLMRLRDLQAPNYRYPRLVVVKEVGSDGTASKARGRKSMLSKLCGVGKKDMTLQFLCPVDMTQVPCGYGGEGYRFKETRSWVKKISPVLQVAVVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDSRSIAAPTR 1312          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 3.600e-101
Identity = 163/227 (71.81%), Postives = 200/227 (88.11%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V ESTQESL RLK+LQAPNYLYPRLVVVKE+ SG  SS+A GKK++L+K RG+ KK+M LHFLCPV+M++VPCGYGGEG+RF++TR WV+KISPVLQVA VTAKVAL ATTGL+V+ SDFL+D++DGLV +LVDRTLDE  L RV++GEE +GADMQ+ TRASYEALKKFMDKE++ R K+A+DGDGYV FRD+MKRV+DG+GGMVW+RN+NVQ+WL   S  +P+R
Sbjct:  867 VLESTQESLMRLKNLQAPNYLYPRLVVVKEVGSGGTSSKAHGKKSMLTKLRGLAKKDMTLHFLCPVDMTRVPCGYGGEGHRFKQTRGWVRKISPVLQVAVVTAKVALNATTGLNVDPSDFLKDVRDGLVGELVDRTLDEHALRRVVTGEEAIGADMQRGTRASYEALKKFMDKEEIKRCKDAKDGDGYVHFRDEMKRVADGKGGMVWVRNKNVQKWL--ESRAAPTR 1091          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 2.560e-100
Identity = 171/219 (78.08%), Postives = 192/219 (87.67%), Query Frame = 1
Query:  292 STQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSN 948
            +TQESL RLK+LQAPNYLYP LV V+E  +    S A G K++L K RGV  K+M LHFLCPV+M+KVPCGYGG+GYRFRETR WVKKISPVLQVA VTAKVALKAT+GLDV+ SDFL+D+KDGLV +LVD TLDED LLR++SGEEDVGADM+KDTRASYEALKKFMDKEQ+DRLKNARDGDGYVDFRDKMKRV+DGRGGMVWIRNENVQ+W    SN
Sbjct: 1305 TTQESLMRLKNLQAPNYLYPGLVAVEETGADGTPSGARGMKSMLHKVRGV-GKDMTLHFLCPVDMTKVPCGYGGKGYRFRETRGWVKKISPVLQVALVTAKVALKATSGLDVDLSDFLKDVKDGLVGELVDPTLDEDALLRIVSGEEDVGADMRKDTRASYEALKKFMDKEQMDRLKNARDGDGYVDFRDKMKRVADGRGGMVWIRNENVQQWTDSRSN 1522          
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 8.190e-99
Identity = 159/227 (70.04%), Postives = 196/227 (86.34%), Query Frame = 1
Query:  283 VAESTQESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKKEMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVALKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADMQKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMVWIRNENVQRWLYLHSNNSPSR 963
            V ESTQESLARLK+LQAPNY YPRLVVVKE+ S   SS+A GKK++LSK RG+ KK+M LHFLCPV+M+ VPCGYGGEGY+F+ETR WVK++SP LQV  VTAKVAL A TGL+V+ SDFL+D+KDGLV++LVDRTLDED LLR +SG++ VGAD+Q+DTRASYEALK FM+ E+  R KNARDGDGY++FR++MKR+ DGRGG VW+RNENV++WL  +S+ +PSR
Sbjct:  806 VLESTQESLARLKNLQAPNYHYPRLVVVKEVGSHGTSSKAHGKKSMLSKLRGLGKKDMRLHFLCPVDMTTVPCGYGGEGYQFQETRAWVKRVSPALQVTVVTAKVALNAVTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVSGDDTVGADLQRDTRASYEALKVFMENEERRRRKNARDGDGYIEFREEMKRLPDGRGGEVWVRNENVRKWLASNSSPAPSR 1032          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14762.3637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1D3_9PHAE2.880e-11474.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC3_ECTSI6.960e-11179.30LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K516_9PHAE1.680e-11074.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K4_9PHAE1.770e-10773.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD1_9PHAE2.480e-10673.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSY4_9PHAE4.590e-10471.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS7_ECTSI5.460e-10272.25LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7G431_ECTSI3.600e-10171.81LRR-GTPase of the ROCO family, incomplete sequence... [more]
D8LCS7_ECTSI2.560e-10078.08LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI8.190e-9970.04LRR-GTPase of the ROCO family, incomplete sequence... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14762contigEcto-sp13_S_contig14762:1762..3054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score366.3
Seed ortholog evalue1.5e-98
Seed eggNOG ortholog2880.D7FUC3
Model size1027
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons2
EggNOG OGs2CYK8@1,2S4YE@2759
Ec32 ortholog descriptionLRR-GTPase of the ROCO family, putative pseudogene
Ec32 orthologEc-03_000730.1
EC3.2.1.21
Cds size966
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.5100906-CDS-Ecto-sp13_S_contig14762:1761..23341681462787.5100906-CDS-Ecto-sp13_S_contig14762:1761..2334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14762 1762..2334 +
1681462787.5207396-CDS-Ecto-sp13_S_contig14762:2600..29931681462787.5207396-CDS-Ecto-sp13_S_contig14762:2600..2993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14762 2601..2993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.5288973-UTR-Ecto-sp13_S_contig14762:2993..30541681462787.5288973-UTR-Ecto-sp13_S_contig14762:2993..3054Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14762 2994..3054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14762.3637.1prot_Ecto-sp13_S_contig14762.3637.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14762 1762..2993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14762.3637.1

>prot_Ecto-sp13_S_contig14762.3637.1 ID=prot_Ecto-sp13_S_contig14762.3637.1|Name=mRNA_Ecto-sp13_S_contig14762.3637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=322bp
MNEMAVTAVKGALGEMDGRFGKIQGGIDEVHSAVNRGRGEMVGGLDEVKE
TVTGGLDETRDELKRGLDGITGQLSDVKVEMKDGFDTIKGRLDTVAESTQ
ESLARLKDLQAPNYLYPRLVVVKEIDSGRASSRASGKKNILSKFRGVVKK
EMMLHFLCPVNMSKVPCGYGGEGYRFRETRDWVKKISPVLQVAAVTAKVA
LKATTGLDVNTSDFLRDMKDGLVDQLVDRTLDEDMLLRVLSGEEDVGADM
QKDTRASYEALKKFMDKEQVDRLKNARDGDGYVDFRDKMKRVSDGRGGMV
WIRNENVQRWLYLHSNNSPSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig14762:1762..3054+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14762.3637.1 ID=mRNA_Ecto-sp13_S_contig14762.3637.1|Name=mRNA_Ecto-sp13_S_contig14762.3637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14762:1762..3054+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGATGGCCGTGACTGCTGTGAAGGGGGCTCTCGGTGAGATGGA CGGAAGGTTTGGCAAAATTCAAGGGGGAATTGATGAAGTTCACAGTGCGG TGAACAGAGGGCGTGGCGAGATGGTTGGTGGTCTGGATGAGGTAAAGGAA ACGGTGACGGGAGGGCTCGATGAGACACGGGATGAGTTGAAGAGAGGGTT GGACGGGATTACGGGCCAGTTAAGCGACGTGAAAGTCGAGATGAAGGACG GGTTTGACACGATAAAGGGAAGGCTGGACACGGTTGCAGAGAGCACCCAG GAAAGCCTCGCGCGCCTCAAGGACCTACAGGCCCCAAATTACTTGTACCC TCGCCTTGTGGTAGTCAAAGAGATCGACTCCGGTCGTGCTTCGTCGAGGG CTTCTGGGAAGAAGAATATACTGAGCAAGTTTCGTGGCGTGGTGAAGAAG GAGATGATGCTGCATTTCTTGTGCCCGGTGAACATGAGCAAAGTGCCGTG CGGCTACGGTGGCGAAGGCTATCGGTTTCGGGAGACACGTGACTGGGTCA AGAAAATATCGCCTGTCCTTCAGGTGAAACCTCCTTGGGATATATCCGGT CTGAGTCAGTATAGCTGTCGCAGGTGGTGTGCTACACTTCTCCACCCCCC CCATTGTCTAGCACTCCATCCGAGCTCTAAGCACTCGGTCTGAGCTCTAC TCCTAGTGTGGAGTGTTTGTGCTGAATGCCCGGAGTATGCGGGGCGGGTC GTCGGTGCCCTGCTTGGAAACGCGAGCAAAAGATGAGCAGTCGTGAAGTT GTAGGTCATCCTTTGTGTGCGTGTGTACTCTTTTACTAGGTGGCCGCGGT GACCGCCAAGGTGGCGCTCAAAGCAACGACAGGACTGGACGTGAACACGT CGGATTTCCTTAGAGACATGAAGGACGGGTTGGTCGATCAGCTGGTCGAC CGCACTCTCGACGAGGACATGCTGCTTCGCGTTCTATCGGGAGAGGAGGA TGTCGGGGCCGACATGCAGAAGGATACGAGGGCCTCGTATGAAGCGTTGA AAAAGTTCATGGATAAGGAGCAAGTGGACAGGCTTAAGAACGCCAGGGAT GGTGATGGCTACGTAGACTTCAGGGACAAAATGAAGCGTGTATCGGACGG GAGGGGGGGTATGGTGTGGATTCGAAATGAAAACGTTCAAAGGTGGTTGT ACTTACATTCGAACAATTCCCCATCGAGGTAGATGCCGGAGTATTGGAAC ACGCAGCAGTATGTCACCCCGAGGTTGTAGATGTTTTTCTTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14762:1762..3054+

>mRNA_Ecto-sp13_S_contig14762.3637.1 ID=mRNA_Ecto-sp13_S_contig14762.3637.1|Name=mRNA_Ecto-sp13_S_contig14762.3637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14762:1762..3054+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGATGGCCGTGACTGCTGTGAAGGGGGCTCTCGGTGAGATGGA
CGGAAGGTTTGGCAAAATTCAAGGGGGAATTGATGAAGTTCACAGTGCGG
TGAACAGAGGGCGTGGCGAGATGGTTGGTGGTCTGGATGAGGTAAAGGAA
ACGGTGACGGGAGGGCTCGATGAGACACGGGATGAGTTGAAGAGAGGGTT
GGACGGGATTACGGGCCAGTTAAGCGACGTGAAAGTCGAGATGAAGGACG
GGTTTGACACGATAAAGGGAAGGCTGGACACGGTTGCAGAGAGCACCCAG
GAAAGCCTCGCGCGCCTCAAGGACCTACAGGCCCCAAATTACTTGTACCC
TCGCCTTGTGGTAGTCAAAGAGATCGACTCCGGTCGTGCTTCGTCGAGGG
CTTCTGGGAAGAAGAATATACTGAGCAAGTTTCGTGGCGTGGTGAAGAAG
GAGATGATGCTGCATTTCTTGTGCCCGGTGAACATGAGCAAAGTGCCGTG
CGGCTACGGTGGCGAAGGCTATCGGTTTCGGGAGACACGTGACTGGGTCA
AGAAAATATCGCCTGTCCTTCAGGTGGCCGCGGTGACCGCCAAGGTGGCG
CTCAAAGCAACGACAGGACTGGACGTGAACACGTCGGATTTCCTTAGAGA
CATGAAGGACGGGTTGGTCGATCAGCTGGTCGACCGCACTCTCGACGAGG
ACATGCTGCTTCGCGTTCTATCGGGAGAGGAGGATGTCGGGGCCGACATG
CAGAAGGATACGAGGGCCTCGTATGAAGCGTTGAAAAAGTTCATGGATAA
GGAGCAAGTGGACAGGCTTAAGAACGCCAGGGATGGTGATGGCTACGTAG
ACTTCAGGGACAAAATGAAGCGTGTATCGGACGGGAGGGGGGGTATGGTG
TGGATTCGAAATGAAAACGTTCAAAGGTGGTTGTACTTACATTCGAACAA
TTCCCCATCGAGGTAG
back to top