mRNA_Ecto-sp13_S_contig14752.3633.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14752.3633.1
Unique NamemRNA_Ecto-sp13_S_contig14752.3633.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: A0A6H5J9H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 2.490e-38
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1
Query:    1 GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLLVAAASCVP 210
            GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGL VAAASCVP
Sbjct:  103 GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLFVAAASCVP 172          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: D7G3L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.770e-24
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    1 GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYL 132
            GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYL
Sbjct:  104 GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYL 147          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: A0A7R9UH25_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.230e-20
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLLVAAASCVP 210
            GSLVL F+  L Y NA++D Q+++WSG CYV PLFGGW+ADSYLGRY++IL    +YL GL++     +P
Sbjct:    8 GSLVLFFQSRLDYDNADADVQYSIWSGFCYVTPLFGGWLADSYLGRYNTILILCALYLSGLVLMVFGAIP 77          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: W7TJG8_9STRA (Peptide transporter ptr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.380e-19
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLLVAAASCVP 210
            GSLVLLF+ +L YTNA++D  +A+WSG+CY  PL GGW+ADSYLGR+ +I  FS +YL+GL++     +P
Sbjct:   86 GSLVLLFQSQLNYTNAQADNAYAVWSGLCYCAPLLGGWLADSYLGRFKTIGIFSGVYLLGLIILIIGVLP 155          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: A0A7S3GU63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU63_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.440e-15
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLLVAAASCVP 210
            GSLVL F+ +L Y+N E+   F LW+G  YV PL GG+IAD+YLGRY +IL F++IYL GL +     +P
Sbjct:   43 GSLVLFFQTQLDYSNEEAVNAFYLWNGAVYVTPLLGGYIADTYLGRYKTILFFAIIYLFGLALFLFGSIP 112          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: A0A2R6QJ88_ACTCC (Protein NRT1/ PTR FAMILY 8.1 like n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6QJ88_ACTCC)

HSP 1 Score: 70.5 bits (171), Expect = 1.510e-12
Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGL-LVAAASCVP 210
            +LVL F+ +L  T+A +    + WSG CY+ PL G ++AD+YLGRY +I CFS+IY++G+ L+  ++ VP
Sbjct:   66 NLVLYFKHQLNQTSATASKNQSDWSGTCYITPLIGAFLADAYLGRYWTIACFSIIYIIGMTLLTLSASVP 135          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: A0A660KRY6_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A660KRY6_9ROSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.060e-12
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGL 183
            +LVL F+K+L   +A +    + WSG CY+ PL G +IAD+YLGRY +I CFS+IY++G+
Sbjct:   51 NLVLYFKKQLHQHSATASKNASNWSGTCYITPLIGAFIADAYLGRYWTIACFSIIYVIGM 110          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: A0A7J9L1F7_GOSSC (Uncharacterized protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9L1F7_GOSSC)

HSP 1 Score: 69.3 bits (168), Expect = 2.280e-12
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    4 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLLVAAAS 201
            +LVL F+ +L    A +      WSG CY+ PL G ++ADSYLGRY +I CFS+IY++G+ + A S
Sbjct:   51 NLVLYFKHQLNQHTATASKNNQNWSGTCYITPLLGAFLADSYLGRYWTIACFSIIYIIGMTLLAMS 116          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: A0A6P4NA31_GOSAR (protein NRT1/ PTR FAMILY 8.1-like n=19 Tax=Gossypium TaxID=3633 RepID=A0A6P4NA31_GOSAR)

HSP 1 Score: 69.7 bits (169), Expect = 2.820e-12
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    4 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGLLVAAAS 201
            +LVL F+ +L   +A +      WSG CY+ PL G ++ADSYLGRY +I CFS+IY++G+ + A S
Sbjct:   51 NLVLYFKHQLNQHSATASKNNQNWSGTCYITPLIGAFLADSYLGRYWTIACFSIIYIIGMTLLAMS 116          
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Match: A0A6P6UFI5_COFAR (protein NRT1/ PTR FAMILY 8.2-like n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6UFI5_COFAR)

HSP 1 Score: 68.6 bits (166), Expect = 7.180e-12
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    4 SLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSILCFSVIYLVGL 183
            +LVL F+  LG  NA +    + WSG CY+ PL G + AD+YLGR+ +I CFS+IY++G+
Sbjct:   51 NLVLFFKHRLGQHNATASKNVSDWSGTCYITPLIGAFFADAYLGRFWTIACFSIIYVLGM 110          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14752.3633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9H6_9PHAE2.490e-3898.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3L1_ECTSI7.770e-24100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UH25_9STRA7.230e-2055.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TJG8_9STRA1.380e-1955.71Peptide transporter ptr1 n=1 Tax=Nannochloropsis g... [more]
A0A7S3GU63_9STRA1.440e-1552.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2R6QJ88_ACTCC1.510e-1245.71Protein NRT1/ PTR FAMILY 8.1 like n=4 Tax=Actinidi... [more]
A0A660KRY6_9ROSI2.060e-1250.00Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
A0A7J9L1F7_GOSSC2.280e-1246.97Uncharacterized protein n=3 Tax=Gossypium TaxID=36... [more]
A0A6P4NA31_GOSAR2.820e-1246.97protein NRT1/ PTR FAMILY 8.1-like n=19 Tax=Gossypi... [more]
A0A6P6UFI5_COFAR7.180e-1248.33protein NRT1/ PTR FAMILY 8.2-like n=4 Tax=Coffea T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14752contigEcto-sp13_S_contig14752:3301..3883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score96.3
Seed ortholog evalue6.1e-18
Seed eggNOG ortholog2880.D7G3L1
Preferred nameSLC15A3
Model size210
KEGG koko:K14638
KEGG TC2.A.17.3
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.oligopeptide transport
EggNOG OGsCOG3104@1,KOG1237@2759
Cds size210
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.2804406-CDS-Ecto-sp13_S_contig14752:3300..33771681462787.2804406-CDS-Ecto-sp13_S_contig14752:3300..3377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14752 3301..3377 -
1681462787.290375-CDS-Ecto-sp13_S_contig14752:3750..38831681462787.290375-CDS-Ecto-sp13_S_contig14752:3750..3883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14752 3751..3883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14752.3633.1prot_Ecto-sp13_S_contig14752.3633.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14752 3301..3883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14752.3633.1

>prot_Ecto-sp13_S_contig14752.3633.1 ID=prot_Ecto-sp13_S_contig14752.3633.1|Name=mRNA_Ecto-sp13_S_contig14752.3633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
GSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYLGRYHSI
LCFSVIYLVGLLVAAASCVP
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mRNA from alignment at Ecto-sp13_S_contig14752:3301..3883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14752.3633.1 ID=mRNA_Ecto-sp13_S_contig14752.3633.1|Name=mRNA_Ecto-sp13_S_contig14752.3633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=583bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14752:3301..3883- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTCCCTTGTGCTACTCTTCGAGAAGGAGCTCGGGTACACCAACGCTGA GTCCGACACCCAGTTCGCCCTCTGGTCCGGAGTGTGCTACGTCATGCCCC TGTTCGGCGGCTGGATCGCCGATAGCTACCTCGGTGAGTCAGCCGAATCG CAGAGTTCTCCAGGCATTCGTAAGCGCTGAACACCATTTTATGATGCTGG CCTTTCGGCTCGCTATTCGCGTGACAAGCACATCGCCACTTTTCAGCATG AAGAATACTTCAGGATTCTCACTTCAGCGGCTTTCAGTTTATGCATGCTT TGTCCCGTTTCGAGAGGGACGCGGGGTCAACGGTTACAACCGACAGGTGC CCCCGTCCTCTCCCCCACCTTTGCCGCGCTGGACTTTCAACTCTCCTTCT CTAATTAATTATGTTTGTAAACGTCACCATGCTTTTCCTTATCGCGTCTC GCTCGTAACTGAATCCTCCCCCACCCCCCCCGTCCCTCCTCAATTTACTG CTTCAGGCCGGTACCACTCTATTCTGTGCTTTTCGGTAATTTACTTGGTC GGACTGCTTGTCGCGGCGGCCTCCTGCGTGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14752:3301..3883-

>mRNA_Ecto-sp13_S_contig14752.3633.1 ID=mRNA_Ecto-sp13_S_contig14752.3633.1|Name=mRNA_Ecto-sp13_S_contig14752.3633.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14752:3301..3883- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTCCCTTGTGCTACTCTTCGAGAAGGAGCTCGGGTACACCAACGCTGA
GTCCGACACCCAGTTCGCCCTCTGGTCCGGAGTGTGCTACGTCATGCCCC
TGTTCGGCGGCTGGATCGCCGATAGCTACCTCGGCCGGTACCACTCTATT
CTGTGCTTTTCGGTAATTTACTTGGTCGGACTGCTTGTCGCGGCGGCCTC
CTGCGTGCCC
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