mRNA_Ecto-sp13_S_contig14739.3623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14739.3623.1
Unique NamemRNA_Ecto-sp13_S_contig14739.3623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14739.3623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14739contigEcto-sp13_S_contig14739:1254..2983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1036
Hectar predicted targeting categorymitochondrion
Exons2
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462786.6615987-UTR-Ecto-sp13_S_contig14739:1253..18751681462786.6615987-UTR-Ecto-sp13_S_contig14739:1253..1875Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14739 1254..1875 -
1681462786.703444-UTR-Ecto-sp13_S_contig14739:2971..29831681462786.703444-UTR-Ecto-sp13_S_contig14739:2971..2983Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14739 2972..2983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462786.6725128-CDS-Ecto-sp13_S_contig14739:1875..21261681462786.6725128-CDS-Ecto-sp13_S_contig14739:1875..2126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14739 1876..2126 -
1681462786.6882813-CDS-Ecto-sp13_S_contig14739:2820..29711681462786.6882813-CDS-Ecto-sp13_S_contig14739:2820..2971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14739 2821..2971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14739.3623.1prot_Ecto-sp13_S_contig14739.3623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14739 1876..2971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14739.3623.1

>prot_Ecto-sp13_S_contig14739.3623.1 ID=prot_Ecto-sp13_S_contig14739.3623.1|Name=mRNA_Ecto-sp13_S_contig14739.3623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MRMLRGILERRSSWGSPSASWSCRIICGIVPLSEVEGCAEVDAALQNNFP
GLLLWTGWQALHPALLGRLLSWYTGGVVFCRACHVRPPGFRHLVMRMLKV
LNTFVLDDNRCLKNELLTIKDLLSENPTFNRRF*
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mRNA from alignment at Ecto-sp13_S_contig14739:1254..2983-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14739.3623.1 ID=mRNA_Ecto-sp13_S_contig14739.3623.1|Name=mRNA_Ecto-sp13_S_contig14739.3623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1730bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14739:1254..2983- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCCTGAGGACATGAGAATGCTCCGTGGTATCCTAGAAAGGAGGAGCAG
CTGGGGGAGTCCTTCCGCGAGCTGGTCTTGCAGGATTATCTGCGGGATAG
TCCCCCTCTCGGAGGTGGAAGGATGTGCCGAGGTGGACGCCGCCCTGCAA
AATAACTTTCCAGGTGAAGATCGACGCCCAACCATTCTGTTTTACGACAA
GGCCTGCGTTTTCGACCGCTACCTTAGTGGGCGAGGACATCTATCGTGAC
CTGCAACGCTGTTCATCGTGGACCAGTATATGACATATGTACGTCTGATA
TTCCACTTCCACGGAGGCATCTACGCAGCAAGAGACATAGCGCACATCGC
GGCGTTGTGCCGGGCGGGCGGCCTCGACGGTACTCGTTCACCGCGGGAGT
CAGGCTTTTGGTGCATAGTTAAGAAGAAATTCACAGTGTCGTTAAACTAT
TATATTTTAGGTGCCACACCAAAACCATGTGCGCATTTCCAGCGGGCCTC
AAATCCATATTGTGCGCATTTCGATCGAACGGCCGCCGCCGACAGGTTTT
ATTGTCGCGGACAAATAGAGCTTTTGTGCTCCATCTTGAACTCGCCGAAC
GACTACGACAATACTCTTCTATGGGACTAAATAGGAGACCCACCCGAGTT
GTACTGAAACGACTCCTCTATCGCAGATTCTAACAATGGGTGGCTGAGTG
GTGGGTCACGTTGGTGCTTACCGGCGTTGTTCATGCAACGCCCCGCGCGT
TGGTCTCTTTTCACGCCCAAACGTGTCAGTCAGGACATTTATTTACACTT
GTCTAGCTGTGCCCTTTATTTCATGTTTCCCTGGGATGTTTTACTTACTG
CATGCAGGATTATTGCTTTGGACAGGCTGGCAAGCCCTCCACCCTGCTCT
ACTGGGTCGCTTACTATCCTGGTACACCGGCGGTGTCGTGTTCTGCCGTG
CATGCCACGTACGTCCACCAGGGTTTCGACATTTGGTGATGCGCATGCTC
AAGGTGCTGAACACTTTCGTCTTGGACGACAACAGGTGTTTAAAGAACGA
GCTGCTGACGATCAAGGACCTGCTGTCTGAGAACCCGACCTTTAACCGGC
GATTCTGAAGCACGGACGCATAAAAACGACCGCGTCTGAATTTCCGAGGG
TATGTTTCAGAAGCTCGGGAGACGTCCAATCATATCCGGTATTTAGGTCG
AAGGGGGGCGGTAGATTTGATCAGACGCATACCTTCGGTTGACCACGCGG
TCGTCCGCCTACGCGGTACGTATGGGGATACACGGATATACGTGGATGTC
AGTGCGAGTGTGGTTTTGACGTTGATGGGTAGATAATGTCTCCCGGGTTT
TCTCCAGGGTTTTTCGTCTCGGCGATGAGCGGATGATGGTGCTGCCTTGT
ACGTCGCTCTACGTGTTGTCTTTGCTTGTTGTTGTTTTATGTTCTTGTTC
GGCGTTGTTGTTCGAAAAACAACGGCATTCCCGAAATGCTTGTATTGTTC
CTTTGCGGTTGTTGGGGTCCGAAAGAGAGCCAGGGGACAGGAAGGTTAAA
GTGTTTGAAGTCATGGCCTTCGAGACCCTACCCTCCCCCATGGCGCGTTA
GAGGGTTTGAGCCTGAGTGTCCCAATGCGACACGTGGATGTGAAAGGATA
GTGTTTCAATGTGTAATCAATGTGTAAGTAAGTGCAAACAACAAACCAAG
GTTTGACACCATTGTTGTTGCGACTCACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14739:1254..2983-

>mRNA_Ecto-sp13_S_contig14739.3623.1 ID=mRNA_Ecto-sp13_S_contig14739.3623.1|Name=mRNA_Ecto-sp13_S_contig14739.3623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14739:1254..2983- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAATGCTCCGTGGTATCCTAGAAAGGAGGAGCAGCTGGGGGAGTCC
TTCCGCGAGCTGGTCTTGCAGGATTATCTGCGGGATAGTCCCCCTCTCGG
AGGTGGAAGGATGTGCCGAGGTGGACGCCGCCCTGCAAAATAACTTTCCA
GGATTATTGCTTTGGACAGGCTGGCAAGCCCTCCACCCTGCTCTACTGGG
TCGCTTACTATCCTGGTACACCGGCGGTGTCGTGTTCTGCCGTGCATGCC
ACGTACGTCCACCAGGGTTTCGACATTTGGTGATGCGCATGCTCAAGGTG
CTGAACACTTTCGTCTTGGACGACAACAGGTGTTTAAAGAACGAGCTGCT
GACGATCAAGGACCTGCTGTCTGAGAACCCGACCTTTAACCGGCGATTCT
GA
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