mRNA_Ecto-sp13_S_contig14736.3620.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: D8LKE1_ECTSI (Similar to retinitis pigmentosa GTPase regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE1_ECTSI) HSP 1 Score: 303 bits (777), Expect = 3.760e-92 Identity = 171/317 (53.94%), Postives = 173/317 (54.57%), Query Frame = 2
Query: 2 GLQDAEKTVCIPQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGLKRPPGLRVVDPGPSTDRFAWPYVCIATASTAVWQHVVGWLAIVVLFFGKPLSLTVMADGYSQLPEHVECRPRRSLGLPWNKVKLWDCFRQ*IARCFCAVALSLFSAGVFSVRHEREGREDKKLNQTEDQPNLFFHHGLTTPLPCPPSPITCLT*LDLRAVETQSFDSTHNVHVPALVYSLAPYKVLQVGCGGGHTLVVAKRRARPVSPGS 952
GLQDAEKTVCIPQEVTFF DKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMA+TVDGYCYAWGSADGGWTGL RPPGLRVVDPGPS D RAVETQSFDSTHNVHVPALVYSLAPYKVLQVGCGGGHTLVVAKRRARPVSPG+
Sbjct: 241 GLQDAEKTVCIPQEVTFFSDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAITVDGYCYAWGSADGGWTGLTRPPGLRVVDPGPSAD---------------------------------------------------------------------------------------------------------------------------------------------RAVETQSFDSTHNVHVPALVYSLAPYKVLQVGCGGGHTLVVAKRRARPVSPGT 416
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A835Z434_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z434_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.960e-29 Identity = 62/123 (50.41%), Postives = 78/123 (63.41%), Query Frame = 2
Query: 2 GLQDAEKTVCIPQEVTFFCDKPL--VQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGLKRPPG-LRVVDPGP 361
G+ D K P EV + + V+ A G++H +A + + V+SWGYG +GQ GHG H+R PR V L+ PV QV CG WSMAVT G+ YAWG ADGGWTGL+ PPG LR V+PGP
Sbjct: 148 GVADPPKVAPYPVEVGALRGQRVAEVRVACGEYHNLARTERGAVYSWGYGLDGQCGHGGAQHLRTPRIVERLKGNPVVQVACGSLWSMAVTSTGHLYAWGCADGGWTGLQCPPGVLRCVEPGP 270
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A7S2SV12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV12_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.810e-27 Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 2
Query: 2 GLQDAEKTVCI-PQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTG 319
GL + +K + PQ V+ + A+GDFHM+AL+R R VF+WGYGAEGQ G G+ LH+R PR V +L+ V V+++ CG W S A++ DGY Y WG DGGW G
Sbjct: 9 GLPNMKKKLFFRPQRVSTLDSFGVTSLASGDFHMLALTRDRRVFAWGYGAEGQCGQGNSLHLRTPRPVEALRHVLVSKISCGAWHSAALSADGYLYTWGYGDGGWLG 115
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A7S2G301_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G301_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.380e-23 Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 2
Query: 80 AAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGLKRP 331
AAGD HM+AL+R R VFSWGY AEGQ GHG+ LH R PR + +L+ V V ++ CG W+S ++ +G Y WG DGGW G P
Sbjct: 61 AAGDLHMLALTRDRRVFSWGYSAEGQCGHGTWLHGRTPRPIEALRHVLVTKIACGAWFSAVISAEGDLYTWGYGDGGWLGQGAP 144
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A7S3GVQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVQ9_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 9.770e-18 Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 2
Query: 2 GLQDAEKTVCIPQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVT 268
GL D +KT IP EV F P+V +AGDFHM+AL++ +V+SWGYG +GQ GH +L++R PRR+ + + V CG +S+ +T
Sbjct: 128 GLNDVKKTQLIPAEVMAFSKNPVVTLSAGDFHMLALTQDGQVYSWGYGVDGQTGHCVMLNVRCPRRIDFFDTMHIRDVCCGAGYSLVLT 216
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: D8SKI2_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKI2_SELML) HSP 1 Score: 76.3 bits (186), Expect = 8.060e-12 Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 2
Query: 35 PQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGLKRPPGLR 343
P+ V D LVQ A G FH AL++ +V +WGYG GQ GHG+L + + P V ++ + + CGP W+ A+T +G Y WG G+ PGL+
Sbjct: 287 PKVVAALEDVTLVQVACGGFHAAALTQDGKVITWGYGGNGQLGHGTLENGKEPAIVEAMADKTCTYIACGPAWTAAITENGDLYTWGKNRDYQLGI---PGLK 386
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: R1FI34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FI34_EMIHU) HSP 1 Score: 70.9 bits (172), Expect = 1.380e-11 Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 2
Query: 32 IPQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTG 319
+P++V F + +V +AGD H +A++ V+SWGYGA GQ GHG + +P++V + V V + S A+ DG YAWG + G G
Sbjct: 6 LPKKVETFAGRRVVAVSAGDRHSIAITADGAVWSWGYGASGQLGHGDQQNQLLPKQVEAFAGQRVVAVSAAEYNSFAIAADGGVYAWGLGERGCLG 101
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: UPI00046BE5DE (probable E3 ubiquitin-protein ligase HERC6 n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00046BE5DE) HSP 1 Score: 75.5 bits (184), Expect = 2.320e-11 Identity = 37/108 (34.26%), Postives = 65/108 (60.19%), Query Frame = 2
Query: 2 GLQDAEKTVCIPQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRM-PRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGL 322
G+++ ++ + P+++ ++Q + GD+H +ALS+ +VFSWG ++GQ G G + P+RV SL+ +P+AQV G S+A+++ G Y WGS + G L
Sbjct: 106 GIEELKEIIFTPKKIKTLNGIKIIQVSCGDYHSLALSKDGQVFSWGKNSQGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSLALSLSGTSYGWGSNNAGQLAL 213
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: F1L879_ASCSU (RCC1 domain-containing protein 1 n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L879_ASCSU) HSP 1 Score: 73.9 bits (180), Expect = 2.780e-11 Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query: 56 CDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWG 295
C +P++ A+G H++ L+ V+S+G G+ G+ GHG+L +MP+ + L +P+ ++ CG W S+A+T DG Y WG
Sbjct: 191 CKEPIISMASGKCHVLLLNSSGLVYSFGTGSRGELGHGTLESEQMPKLIDVLSMIPIIEIACGAWHSVALTKDGDVYVWG 270
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A0M3IJG1_ASCLU (Uncharacterized protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IJG1_ASCLU) HSP 1 Score: 73.9 bits (180), Expect = 5.420e-11 Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query: 56 CDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWG 295
C +P++ A+G H++ L+ V+S+G G+ G+ GHG+L +MP+ + L +P+ ++ CG W S+A+T DG Y WG
Sbjct: 360 CKEPIISMASGKCHVLLLNSSGLVYSFGTGSRGELGHGTLESEQMPKLIDVLSVIPIIEIACGAWHSVALTKDGDVYVWG 439 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14736.3620.1 >prot_Ecto-sp13_S_contig14736.3620.1 ID=prot_Ecto-sp13_S_contig14736.3620.1|Name=mRNA_Ecto-sp13_S_contig14736.3620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp GFARRGEDCVHSAGGDLLLRQAPRSSSGRRLPHGGAVAEERGVLVGVRGGback to top mRNA from alignment at Ecto-sp13_S_contig14736:517..2213- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14736.3620.1 ID=mRNA_Ecto-sp13_S_contig14736.3620.1|Name=mRNA_Ecto-sp13_S_contig14736.3620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14736:517..2213- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14736:517..2213- >mRNA_Ecto-sp13_S_contig14736.3620.1 ID=mRNA_Ecto-sp13_S_contig14736.3620.1|Name=mRNA_Ecto-sp13_S_contig14736.3620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14736:517..2213- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |