mRNA_Ecto-sp13_S_contig14734.3619.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14734.3619.1
Unique NamemRNA_Ecto-sp13_S_contig14734.3619.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14734.3619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14734contigEcto-sp13_S_contig14734:2070..2542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size473
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_002820.1
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462786.417772-UTR-Ecto-sp13_S_contig14734:2069..20741681462786.417772-UTR-Ecto-sp13_S_contig14734:2069..2074Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14734 2070..2074 +
1681462786.444358-UTR-Ecto-sp13_S_contig14734:2497..25421681462786.444358-UTR-Ecto-sp13_S_contig14734:2497..2542Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14734 2498..2542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462786.4324262-CDS-Ecto-sp13_S_contig14734:2074..24971681462786.4324262-CDS-Ecto-sp13_S_contig14734:2074..2497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14734 2075..2497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14734.3619.1prot_Ecto-sp13_S_contig14734.3619.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14734 2075..2497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14734.3619.1

>prot_Ecto-sp13_S_contig14734.3619.1 ID=prot_Ecto-sp13_S_contig14734.3619.1|Name=mRNA_Ecto-sp13_S_contig14734.3619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MAAPGVFASLVSAKPERDTTVELLEVSGCTCSVRSDPRFSAWMKIPSTLG
VVWTLLFISEVCKAVEAGRTCFGIELDSFVCMCCCRCYDGDSCCPRSLLL
DRSLALDHSDVRAFGNSGTINTASDRTTPDSQHALSTFGS*
back to top

mRNA from alignment at Ecto-sp13_S_contig14734:2070..2542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14734.3619.1 ID=mRNA_Ecto-sp13_S_contig14734.3619.1|Name=mRNA_Ecto-sp13_S_contig14734.3619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14734:2070..2542+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGATGGCAGCACCAGGGGTGTTTGCCTCGTTGGTGAGCGCCAAGCCA
GAACGGGACACAACAGTGGAGCTCCTGGAGGTAAGCGGGTGTACGTGTAG
CGTAAGGTCCGATCCGAGGTTTTCTGCTTGGATGAAGATACCTTCAACGC
TTGGTGTTGTGTGGACGTTGCTTTTTATTTCCGAGGTCTGCAAAGCCGTC
GAGGCGGGACGCACGTGTTTCGGCATTGAGCTGGACTCATTTGTGTGTAT
GTGTTGTTGCCGCTGCTACGACGGCGACAGTTGTTGCCCACGTTCGCTCT
TGTTAGATCGCTCACTTGCCCTCGACCACAGCGATGTCAGGGCTTTCGGA
AATTCCGGGACTATCAATACTGCTTCGGATAGGACCACACCAGATTCTCA
ACATGCCTTGTCAACCTTTGGGTCTTAGATCTTTTTTTTTGGCAAAAAAA
ATAAAGCGGGGAGAGCGTGCGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14734:2070..2542+

>mRNA_Ecto-sp13_S_contig14734.3619.1 ID=mRNA_Ecto-sp13_S_contig14734.3619.1|Name=mRNA_Ecto-sp13_S_contig14734.3619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14734:2070..2542+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCACCAGGGGTGTTTGCCTCGTTGGTGAGCGCCAAGCCAGAACG
GGACACAACAGTGGAGCTCCTGGAGGTAAGCGGGTGTACGTGTAGCGTAA
GGTCCGATCCGAGGTTTTCTGCTTGGATGAAGATACCTTCAACGCTTGGT
GTTGTGTGGACGTTGCTTTTTATTTCCGAGGTCTGCAAAGCCGTCGAGGC
GGGACGCACGTGTTTCGGCATTGAGCTGGACTCATTTGTGTGTATGTGTT
GTTGCCGCTGCTACGACGGCGACAGTTGTTGCCCACGTTCGCTCTTGTTA
GATCGCTCACTTGCCCTCGACCACAGCGATGTCAGGGCTTTCGGAAATTC
CGGGACTATCAATACTGCTTCGGATAGGACCACACCAGATTCTCAACATG
CCTTGTCAACCTTTGGGTCTTAG
back to top