mRNA_Ecto-sp13_S_contig14715.3607.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14715.3607.1
Unique NamemRNA_Ecto-sp13_S_contig14715.3607.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14715.3607.1 vs. uniprot
Match: A0A6H5LC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC44_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 9.400e-69
Identity = 144/162 (88.89%), Postives = 147/162 (90.74%), Query Frame = 1 
Query:  127 GTGRRAERGRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTAAAEAKVVKLQAKNKFLSEENTTLKQILQQIQDAGVLQQESGGAPQSXXXXXXQP---SATGIALPTSESSSGVSSGTPASSGSNKGGIVAHGQSPGGTGIGGML 603
            G GRRAERGRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTAA+EAKV KLQAKNKFLSEENT LKQILQQIQDAGVL QE+GGA QS  XXXX     S TGIALP SESSSGVSSGTPASS SNKGGI+AHGQSPGGTGIGGML
Sbjct:  398 GXGRRAERGRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTAASEAKVAKLQAKNKFLSEENTKLKQILQQIQDAGVLPQEAGGASQSHQXXXXXXXXXSPTGIALPASESSSGVSSGTPASSSSNKGGIMAHGQSPGGTGIGGML 559
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BLAST of mRNA_Ecto-sp13_S_contig14715.3607.1 vs. uniprot
Match: D7FQ62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ62_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.110e-47
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  115 VKDDGTGRRAERGRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTAAAEAKVVKLQAKNKFLSEENTTLKQILQQIQD 396
            VKDDGTGRRAERGRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTAA+EAKV KLQAKNKFLSEENT LKQILQQIQD
Sbjct:   39 VKDDGTGRRAERGRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTAASEAKVAKLQAKNKFLSEENTKLKQILQQIQD 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14715.3607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LC44_9PHAE9.400e-6988.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ62_ECTSI1.110e-4796.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14715contigEcto-sp13_S_contig14715:2194..4288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size912
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_007320.1
Cds size912
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.397405-CDS-Ecto-sp13_S_contig14715:2193..24331681462785.397405-CDS-Ecto-sp13_S_contig14715:2193..2433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14715 2194..2433 +
1681462785.4067981-CDS-Ecto-sp13_S_contig14715:2998..31511681462785.4067981-CDS-Ecto-sp13_S_contig14715:2998..3151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14715 2999..3151 +
1681462785.416679-CDS-Ecto-sp13_S_contig14715:3627..40101681462785.416679-CDS-Ecto-sp13_S_contig14715:3627..4010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14715 3628..4010 +
1681462785.4284413-CDS-Ecto-sp13_S_contig14715:4152..42881681462785.4284413-CDS-Ecto-sp13_S_contig14715:4152..4288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14715 4153..4288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14715.3607.1prot_Ecto-sp13_S_contig14715.3607.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14715 2194..4288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14715.3607.1

>prot_Ecto-sp13_S_contig14715.3607.1 ID=prot_Ecto-sp13_S_contig14715.3607.1|Name=mRNA_Ecto-sp13_S_contig14715.3607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
MGLGASSGGGSGGGSSQGGGGGAGSGIGGTGVAGGGGGVKDDGTGRRAER
GRLSTLLDQLKDEIDFHAAAKRDMDLELKRVRQRHRLMEDRAAEEKQKTA
AAEAKVVKLQAKNKFLSEENTTLKQILQQIQDAGVLQQESGGAPQSQQRQ
QQQPSATGIALPTSESSSGVSSGTPASSGSNKGGIVAHGQSPGGTGIGGM
LAAAATAKAQQQAQQQGKPQQHQQQQHQPQQQQQQQQQQQQQQQQQHQHQ
QQTPGQQGISSSSSSSSNNSSWAWVPALEYLRRHRGWRTRGRPNGEDRAI
RLG*
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mRNA from alignment at Ecto-sp13_S_contig14715:2194..4288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14715.3607.1 ID=mRNA_Ecto-sp13_S_contig14715.3607.1|Name=mRNA_Ecto-sp13_S_contig14715.3607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14715:2194..4288+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTTGGGGGCGAGCAGCGGTGGTGGCAGCGGCGGTGGTTCATCGCA
GGGCGGTGGCGGCGGTGCGGGGTCCGGTATCGGCGGGACAGGGGTGGCAG
GGGGGGGGGGGGGGGTGAAAGACGACGGGACGGGACGTCGGGCGGAGAGG
GGACGTCTGAGCACGCTGCTCGACCAGCTCAAGGATGAGATCGATTTCCA
CGCCGCTGCGAAGAGGGATATGGATCTGGAACTGAAACGGGTGAGCGAGA
GAAAAGAGACAGACAGACGTCAAGACGGCAGGCAACACAGATAGACGGGC
AGTCAGGTGTGGCACATGCCACTCTTTCGTAATATTTTGGGTTGCCAGTT
GCCAGTTGCCAGTTTCCAGTTGCCAGCATGTTTTGTTTCCGGTCGCACAA
GGCATAGTGTCAACTTGTGGTTGCACTCTTGCTGCGTTCCGACCAAAATT
TAGGACCATCCGGTCTGTGTGGTCAGGCCGTGTTGATTCCGTGTTGATTT
GGTCACCCCACGCGTGACCCTTTCGAACAACTCGGCAACTAGTAACCTGA
GCGTGCGAGTAGCAAGCTCGGACCACCCCGAAATATTGCCGGAGCGTTGT
CGAAGAAGAGGTAGGCGGCACCCCGATTGGTCGCTGTCATCTGTTGTCGA
ACTTTGTGGCAGCTTCCGGACGAGGGCAACCCCCGCGAAGTTACGCGTGG
CGTAGCAAGATGTTTCGCTATTGGAGACATGCGCACGAACACTAGAGGTA
CGTCCAACTTCCATTTCTTGGTGTGTGTGTGTCTTTTGCTGTGTCTCGCG
GGCAGGTGAGGCAACGGCATCGCTTGATGGAGGACCGGGCGGCGGAAGAG
AAGCAGAAAACCGCTGCAGCGGAAGCTAAGGTGGTCAAGCTCCAGGCCAA
GAACAAGTTCCTCAGCGAGGAGAACACGACGCTGAAGCAGATCCTGCAGC
AGATCCAGGTGCTCGGTACAAACGGTACCCTGAAAGGTTTGGGGCGGGCT
GGTTGGTTTTGATAGCGATAGTAGCGGGTGGAATGTATGTGTGTAGCTAC
ATTTCCGTGTCCTATGTGAGAGCATAGGCATATCCATAGGAGCATCGAGA
GGACTGGCGCAGGCTGCAGAGTAAAGTCGTTTGTGACAGCTTCGGCTTGG
CTCTATTGCCGTGGCTTAAGCTGCCTTGTGCTGGTTCCCCGGCAAGCCCT
TCTTGCCGACGCGCGTGTTGACCGCGGCGCAACCTAGCCGCAAGTGGTCG
TCGTTTCACATCTGATAAGTCTTTCAAGCGCGTCAAACACTGGGGCTTGT
CTGGGCGTAACGCTTGATCAGACCGTCTTTGTACCACGGTGCATGATGTA
CAGCGTCCTGGTGCCACAGTGCGTCATGTTGAAGCATGCCTTCGTTTATG
TGACCTGAGTTGCTGTTCCCTTACTGCATGGCAGGATGCGGGTGTGTTGC
AGCAAGAATCGGGGGGGGCGCCGCAGTCACAACAGAGGCAGCAGCAGCAG
CCGAGTGCAACAGGGATAGCCCTACCGACAAGCGAATCGAGCTCGGGAGT
GTCCAGCGGGACGCCAGCTTCGTCCGGCAGTAACAAGGGTGGTATCGTGG
CTCACGGACAATCACCCGGCGGGACAGGGATAGGAGGAATGCTGGCCGCC
GCCGCCACTGCCAAGGCCCAGCAGCAGGCCCAGCAGCAGGGGAAGCCTCA
GCAGCACCAGCAACAGCAGCACCAGCCACAGCAGCAGCAACAGCAGCAAC
AGCAGCAACAGCAACAACAGCAACAGCAGCACCAGCACCAGCAGCAGACT
CCCGGGCAGCAGGGAATGTGGAAGGGTCCAGGGGCGATACAGCAGCAGCA
GCAGCAGCAGCAGCAACAGCAGCAACAACAACAACAGCAACAAAAACAGC
AGCATCCTGCTTCTATCGGTTCGGGTCGCCTCCAACAGGGACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCTCCTGGG
CGTGGGTCCCGGCTCTCGAATATCTCCGTCGGCACCGGGGCTGGAGGACC
CGCGGTCGCCCCAACGGCGAAGATCGAGCGATCCGGTTGGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14715:2194..4288+

>mRNA_Ecto-sp13_S_contig14715.3607.1 ID=mRNA_Ecto-sp13_S_contig14715.3607.1|Name=mRNA_Ecto-sp13_S_contig14715.3607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14715:2194..4288+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTTGGGGGCGAGCAGCGGTGGTGGCAGCGGCGGTGGTTCATCGCA
GGGCGGTGGCGGCGGTGCGGGGTCCGGTATCGGCGGGACAGGGGTGGCAG
GGGGGGGGGGGGGGGTGAAAGACGACGGGACGGGACGTCGGGCGGAGAGG
GGACGTCTGAGCACGCTGCTCGACCAGCTCAAGGATGAGATCGATTTCCA
CGCCGCTGCGAAGAGGGATATGGATCTGGAACTGAAACGGGTGAGGCAAC
GGCATCGCTTGATGGAGGACCGGGCGGCGGAAGAGAAGCAGAAAACCGCT
GCAGCGGAAGCTAAGGTGGTCAAGCTCCAGGCCAAGAACAAGTTCCTCAG
CGAGGAGAACACGACGCTGAAGCAGATCCTGCAGCAGATCCAGGATGCGG
GTGTGTTGCAGCAAGAATCGGGGGGGGCGCCGCAGTCACAACAGAGGCAG
CAGCAGCAGCCGAGTGCAACAGGGATAGCCCTACCGACAAGCGAATCGAG
CTCGGGAGTGTCCAGCGGGACGCCAGCTTCGTCCGGCAGTAACAAGGGTG
GTATCGTGGCTCACGGACAATCACCCGGCGGGACAGGGATAGGAGGAATG
CTGGCCGCCGCCGCCACTGCCAAGGCCCAGCAGCAGGCCCAGCAGCAGGG
GAAGCCTCAGCAGCACCAGCAACAGCAGCACCAGCCACAGCAGCAGCAAC
AGCAGCAACAGCAGCAACAGCAACAACAGCAACAGCAGCACCAGCACCAG
CAGCAGACTCCCGGGCAGCAGGGAATCAGCAGCAGCAGCAGCAGCAGCAG
CAACAACAGCTCCTGGGCGTGGGTCCCGGCTCTCGAATATCTCCGTCGGC
ACCGGGGCTGGAGGACCCGCGGTCGCCCCAACGGCGAAGATCGAGCGATC
CGGTTGGGGTAG
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