mRNA_Ecto-sp13_S_contig14715.3606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14715.3606.1
Unique NamemRNA_Ecto-sp13_S_contig14715.3606.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14715.3606.1 vs. uniprot
Match: A0A6H5LC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC44_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.080e-35
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 GRFQIREVRASIAEGVQSSACRAALSLQEDAEHAIAIVQDGKLVPSPLSTPRARTRAQTEGDAIQQTTAVGDGNIQAVANA 243
            GRFQIREVRASIAEG QSSACRAALSLQEDAEHAIAIVQDGKLVPSPLSTPRAR R+QTE D+IQQTTAV DGNIQAVANA
Sbjct:   79 GRFQIREVRASIAEGAQSSACRAALSLQEDAEHAIAIVQDGKLVPSPLSTPRARRRSQTEDDSIQQTTAVSDGNIQAVANA 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14715.3606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LC44_9PHAE1.080e-3592.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14715contigEcto-sp13_S_contig14715:564..1403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_007310.1
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.3445652-CDS-Ecto-sp13_S_contig14715:563..6971681462785.3445652-CDS-Ecto-sp13_S_contig14715:563..697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14715 564..697 +
1681462785.3597198-CDS-Ecto-sp13_S_contig14715:1261..14031681462785.3597198-CDS-Ecto-sp13_S_contig14715:1261..1403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14715 1262..1403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14715.3606.1prot_Ecto-sp13_S_contig14715.3606.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14715 564..1403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14715.3606.1

>prot_Ecto-sp13_S_contig14715.3606.1 ID=prot_Ecto-sp13_S_contig14715.3606.1|Name=mRNA_Ecto-sp13_S_contig14715.3606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
GRFQIREVRASIAEGVQSSACRAALSLQEDAEHAIAIVQDGKLVPSPLST
PRARTRAQTEGDAIQQTTAVGDGNIQAVANAVAAAAVAAAVS
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mRNA from alignment at Ecto-sp13_S_contig14715:564..1403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14715.3606.1 ID=mRNA_Ecto-sp13_S_contig14715.3606.1|Name=mRNA_Ecto-sp13_S_contig14715.3606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14715:564..1403+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGATTCCAAATACGCGAGGTTCGGGCGAGCATAGCGGAAGGCGTGCA
ATCATCTGCTTGTCGCGCCGCTTTGAGCCTCCAGGAGGATGCCGAGCACG
CAATCGCTATTGTACAGGACGGGAAGCTCGTTCCGTGAGTGTTGCTGTTA
TTTAATCACACGTCGTTGGCGTGTTTTTTTGTTCTGTCGGTGTACCATGC
ATTCGAGACGGCCAGTGCTGGATGCACGCACAACGTTTTCCAGTTGCTGT
GGGTGGTGCCGCTGTGGTCTTGGAAGCATCCAGGCGTTACCAAAATTTGT
TCGTTCATATTGTTTGCTGTGCCTTGGTTCGACAAGGCTTTGCCCGGGGC
GGCGGTTTCATTTTTTTTTCTCAACCCAACCCTTATGCTTTTCCGCATGT
TCGAGCGAGTTCGTGTGCCGAACGTTGGCTACCTGCCCGTTGACACGATG
CCGTTGTCCCTGCTCTTTTGTGTACCAAGCAACAAAAAATCAGTTGTCGA
GGATCGAAATCAAAACTGGAGCACCCCCACCGCCTGTAAATCTCACTTGT
GAACACCTTGAGAGTTGTTTCACTTGCTCTCTGATCTTTCTCCGCTCTTC
GCACCCCCCCTGTTTGTGTCGGAGCCTGTGTCGCCTTGTCTGTTCTCTCT
TTTCATCTTGTCTCTCTCTTGCACACGTACTCTTTCGGTGCCCTACAGGT
CCCCGTTATCCACCCCGCGCGCGAGAACGCGCGCCCAGACCGAGGGCGAC
GCGATACAACAAACAACGGCCGTTGGCGACGGAAACATACAGGCCGTCGC
GAACGCGGTCGCCGCGGCGGCCGTGGCGGCGGCGGTCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14715:564..1403+

>mRNA_Ecto-sp13_S_contig14715.3606.1 ID=mRNA_Ecto-sp13_S_contig14715.3606.1|Name=mRNA_Ecto-sp13_S_contig14715.3606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14715:564..1403+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGATTCCAAATACGCGAGGTTCGGGCGAGCATAGCGGAAGGCGTGCA
ATCATCTGCTTGTCGCGCCGCTTTGAGCCTCCAGGAGGATGCCGAGCACG
CAATCGCTATTGTACAGGACGGGAAGCTCGTTCCGTCCCCGTTATCCACC
CCGCGCGCGAGAACGCGCGCCCAGACCGAGGGCGACGCGATACAACAAAC
AACGGCCGTTGGCGACGGAAACATACAGGCCGTCGCGAACGCGGTCGCCG
CGGCGGCCGTGGCGGCGGCGGTCTCC
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