mRNA_Ecto-sp13_S_contig14714.3604.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14714.3604.1
Unique NamemRNA_Ecto-sp13_S_contig14714.3604.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14714.3604.1 vs. uniprot
Match: A0A6H5KRL3_9PHAE (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.740e-33
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 QNHLEQQKNDALDAQNKAKDIALANQALKAEKDMAETSERRLREENEHLRKEAREKNALVDKLTDTDRAVEAGKRA 228
            QNHLEQQKNDALDAQNKAKDIALANQALKAEKDMA TSERRLREENEHLRKEAREKNALV KLTDTDRAVEAGKRA
Sbjct:  310 QNHLEQQKNDALDAQNKAKDIALANQALKAEKDMATTSERRLREENEHLRKEAREKNALVHKLTDTDRAVEAGKRA 385
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BLAST of mRNA_Ecto-sp13_S_contig14714.3604.1 vs. uniprot
Match: D7FMD3_ECTSI (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD3_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.430e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:  262 MRRKAEDDRRAVAQAELEQTKQASQAREKTRELEGKISALKA 387
            MRRKAEDDRRAVAQAELEQTKQASQAREKTRELEGKISALKA
Sbjct:    1 MRRKAEDDRRAVAQAELEQTKQASQAREKTRELEGKISALKA 42
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BLAST of mRNA_Ecto-sp13_S_contig14714.3604.1 vs. uniprot
Match: D7FMD4_ECTSI (Similar to TPR, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 7.470e-10
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 QNHLEQQKNDALDAQNKAKDIALANQALKAEKDMAE 108
            QNHLEQQKNDALDAQNK KDIALANQALKAEKDMAE
Sbjct:  264 QNHLEQQKNDALDAQNKVKDIALANQALKAEKDMAE 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14714.3604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRL3_9PHAE5.740e-3397.37TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
D7FMD3_ECTSI1.430e-12100.00TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
D7FMD4_ECTSI7.470e-1097.22Similar to TPR, partial n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14714contigEcto-sp13_S_contig14714:1913..3271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size392
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.2847874-CDS-Ecto-sp13_S_contig14714:1912..20201681462785.2847874-CDS-Ecto-sp13_S_contig14714:1912..2020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14714 1913..2020 +
1681462785.2937374-CDS-Ecto-sp13_S_contig14714:2843..29631681462785.2937374-CDS-Ecto-sp13_S_contig14714:2843..2963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14714 2844..2963 +
1681462785.3021696-CDS-Ecto-sp13_S_contig14714:3107..32691681462785.3021696-CDS-Ecto-sp13_S_contig14714:3107..3269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14714 3108..3269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14714.3604.1prot_Ecto-sp13_S_contig14714.3604.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14714 1913..3269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14714.3604.1

>prot_Ecto-sp13_S_contig14714.3604.1 ID=prot_Ecto-sp13_S_contig14714.3604.1|Name=mRNA_Ecto-sp13_S_contig14714.3604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
QNHLEQQKNDALDAQNKAKDIALANQALKAEKDMAETSERRLREENEHLR
KEAREKNALVDKLTDTDRAVEAGKRAELAALQEELTRMRRKAEDDRRAVA
QAELEQTKQASQAREKTRELEGKISALKAR
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mRNA from alignment at Ecto-sp13_S_contig14714:1913..3271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14714.3604.1 ID=mRNA_Ecto-sp13_S_contig14714.3604.1|Name=mRNA_Ecto-sp13_S_contig14714.3604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14714:1913..3271+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACCATCTCGAGCAGCAGAAGAACGACGCGCTCGACGCCCAGAACAA
GGCTAAGGATATCGCCCTCGCGAACCAGGCGCTCAAGGCGGAGAAGGACA
TGGCGGAGGTACGGTACGGTACATTACGGTACATAACGTTACGGCAGGGT
ACGGAACGGTGCGGTACAGTACAGGTCGGTACGGAACGGAACGGTATCCT
ACTAATCGGTACGGTACGGTACGGTATCGGTACGGTACGGTATCCCGTAT
ATATTGGGAACCGTGTGTGTTGGGAGAAACGCGTCCCAGCGGTGGAGAGG
AAGGCGTTTTCCTTCCTCTTCCGCCCCCCCCCCCCCCCCTTGCTGCTGGT
GCTGTACGGTGTTGTTGCGATATGACAGAGGGGATGCCTGTTTAGTGCCG
GATGAATTGTGCCAATGCCCGGTATTGTCCCAGTGTTTTCAGCGGACGCA
TACTGGGTTTTCAGGTGATTGGCAGTACTTTGAGCAGTGCCGGTCCGGTA
GTGCCGGTCCAGTGTAGTCCCGGTGAATTTTCTTGGCATACACTGGCACT
ACCCAGGGACCCGCTCTGTAGGTCGTTTGAAGAAAACGACGGAGAGCCGG
GCATGGGTCCCATACGCTTGGTGATACGAAACGGCCGTCGGAACCGTTCA
TTGTGTTTTGTGGTTTAGGGTTGGAAATCTGTTTGTGCCTGGTAAACATT
ACTTTCGTAGGCAAATTCGCTTTGACAACTTTGTTTGCATATGGTGAAGG
TAAATCAGTAGACAACCGAGAACTGAGCACTACTTCGTGGGCAATATTGC
CTCACGTCCTTCTTAATAGTTGCATCTCGGGAAAGTAGTGAAACAATCAA
GAGCTTATGTTTCCTGCGGCGGCGATTTCGCTTGACACTTTTGTTTGCAT
CTGGTGGTGATGATGGATCTGACTCTGGCAGACGTCCGAGCGTCGGCTGA
GGGAGGAAAACGAGCACCTCCGCAAGGAGGCGAGGGAGAAGAACGCCCTC
GTGGACAAGCTCACGGACACGGACCGCGCCGTCGAGGCTGGCAAGAGGGC
GGTAAGACGGACTGACTTTTTGGGGTACCGGTGGCTTGGATGGTGCGTAC
AATCTACGTAGATTCGTCGGGCGATCTATTCTCGTGTTAGAATCCCCGTT
AAATTCCGCCGCTTTTTTTTTGTGCTCGTTGTTGTCGTCCCGCAGGAGCT
TGCTGCTCTGCAGGAGGAGTTGACCCGCATGCGGCGCAAGGCAGAGGACG
ACCGCCGTGCGGTGGCCCAGGCGGAGCTGGAGCAGACGAAGCAGGCCTCG
CAGGCCAGGGAGAAGACGCGCGAGCTGGAGGGCAAGATCTCTGCGCTCAA
GGCAAGACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14714:1913..3271+

>mRNA_Ecto-sp13_S_contig14714.3604.1 ID=mRNA_Ecto-sp13_S_contig14714.3604.1|Name=mRNA_Ecto-sp13_S_contig14714.3604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14714:1913..3271+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACCATCTCGAGCAGCAGAAGAACGACGCGCTCGACGCCCAGAACAA
GGCTAAGGATATCGCCCTCGCGAACCAGGCGCTCAAGGCGGAGAAGGACA
TGGCGGAGACGTCCGAGCGTCGGCTGAGGGAGGAAAACGAGCACCTCCGC
AAGGAGGCGAGGGAGAAGAACGCCCTCGTGGACAAGCTCACGGACACGGA
CCGCGCCGTCGAGGCTGGCAAGAGGGCGGAGCTTGCTGCTCTGCAGGAGG
AGTTGACCCGCATGCGGCGCAAGGCAGAGGACGACCGCCGTGCGGTGGCC
CAGGCGGAGCTGGAGCAGACGAAGCAGGCCTCGCAGGCCAGGGAGAAGAC
GCGCGAGCTGGAGGGCAAGATCTCTGCGCTCAAGGCAAGA
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