mRNA_Ecto-sp13_S_contig14714.3605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14714.3605.1
Unique NamemRNA_Ecto-sp13_S_contig14714.3605.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14714.3605.1 vs. uniprot
Match: D7FMD3_ECTSI (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD3_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 5.470e-59
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 1 
Query:    1 GEKLTAAAAXXXXSEKVAATKAVELSARLNEARARLVTGGGGGAGAXXXXXXXXXXXXXXXXLDDGMAGQLAEVGKLQMELESMRADLKAKTEALATSERQRGQYEAMAKSKQKHVEALEAAGKAAKEDLEGKVNEALARAQ 426
            GEKLTAAAAXXXXSEKVAATKAVELSARLNEARARLVTG GGGAG XXXXXXXXXXXXXXXXLDDGMAGQLAEVGKLQMELESMRADLKAKTEAL+TSERQRGQYEAMAKSKQKHVEALEAAGKA KE+LEGKVNEALARAQ
Sbjct:   44 GEKLTAAAAXXXXSEKVAATKAVELSARLNEARARLVTGAGGGAGXXXXXXXXXXXXXXXXXLDDGMAGQLAEVGKLQMELESMRADLKAKTEALSTSERQRGQYEAMAKSKQKHVEALEAAGKATKEELEGKVNEALARAQ 185
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BLAST of mRNA_Ecto-sp13_S_contig14714.3605.1 vs. uniprot
Match: A0A6H5KRL3_9PHAE (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL3_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 4.570e-48
Identity = 129/154 (83.77%), Postives = 130/154 (84.42%), Query Frame = 1 
Query:    1 GEKLTAAAAXXXXSEKVAATKAVELSARLNEARARLVTGGGGGAGAXXXXXXXXXXXXXXXXLDDGMAGQLAEVGKLQMELE---------SMRADLKAKTEALATSERQRGQYEAMAKSKQKHVEALEAAGKAAKEDLEGKVNEALARAQAAE 435
            GEKLTAA  XXXXSEKVA TKAVELSARLNEARARLVTG GG    XXXXXXXXX   X   LDDGMAGQLAEVGKLQMELE         SMRADLKAKTEALATSERQRGQYEAMAKSKQKHVEALEAAGKA KE+LEGKVNEALARAQAAE
Sbjct:  388 GEKLTAAXXXXXXSEKVATTKAVELSARLNEARARLVTGAGGXX-XXXXXXXXXXGVSXGGGLDDGMAGQLAEVGKLQMELEVGGAVGWTGSMRADLKAKTEALATSERQRGQYEAMAKSKQKHVEALEAAGKATKEELEGKVNEALARAQAAE 540
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14714.3605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMD3_ECTSI5.470e-5996.48TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KRL3_9PHAE4.570e-4883.77TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14714contigEcto-sp13_S_contig14714:3430..4313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size435
Hectar predicted targeting categoryother localisation
Exons2
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.2386944-CDS-Ecto-sp13_S_contig14714:3429..36751681462785.2386944-CDS-Ecto-sp13_S_contig14714:3429..3675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14714 3430..3675 +
1681462785.2497895-CDS-Ecto-sp13_S_contig14714:4124..43131681462785.2497895-CDS-Ecto-sp13_S_contig14714:4124..4313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14714 4125..4313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14714.3605.1prot_Ecto-sp13_S_contig14714.3605.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14714 3430..4313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14714.3605.1

>prot_Ecto-sp13_S_contig14714.3605.1 ID=prot_Ecto-sp13_S_contig14714.3605.1|Name=mRNA_Ecto-sp13_S_contig14714.3605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
GEKLTAAAAAAAASEKVAATKAVELSARLNEARARLVTGGGGGAGAGGGG
AGSGGGVSGGGGLDDGMAGQLAEVGKLQMELESMRADLKAKTEALATSER
QRGQYEAMAKSKQKHVEALEAAGKAAKEDLEGKVNEALARAQAAE
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mRNA from alignment at Ecto-sp13_S_contig14714:3430..4313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14714.3605.1 ID=mRNA_Ecto-sp13_S_contig14714.3605.1|Name=mRNA_Ecto-sp13_S_contig14714.3605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=884bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14714:3430..4313+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGAGAAGCTCACGGCCGCGGCCGCCGCAGCGGCCGCCTCGGAAAAGGT
CGCCGCAACGAAAGCGGTGGAGCTCAGCGCTCGCCTCAACGAGGCACGGG
CACGCCTCGTCACCGGCGGCGGCGGCGGGGCCGGGGCCGGGGGCGGCGGG
GCTGGTTCTGGAGGCGGAGTCAGCGGCGGCGGTGGTCTAGACGACGGCAT
GGCCGGGCAGCTGGCGGAGGTCGGGAAGCTTCAGATGGAGCTCGAGGTGG
GCGGCGTTGTGGGGTGGACGGGGGTATGGGTTGGCATCGGATGAGACTCC
AGGTGGTGTATCCCCCAACACCGTTTCACACGTCAACTTGATGCTTCAGT
CGTTGAAGGACGCCCGAATTTTGAGTTCGACATTTTGACAATCTTTTGAG
TTGCGGCCCGGCTTAATCTGTGTATCCCCCAACGCCGTTCGCTCTCACTC
GACACCCACCCGCATAGTGGCAGTCCCTGGAGCCCCCCCGAACTGGACAA
ATTGATGTTTATTTAACGGCCAGCTCTTTAGCTATACATCTCCCAACGCC
ACTCGCTCGAACACCCGCCACGTGACGGGCAGTTCTTGAAAACCGCCAAG
ATTTGAAATTCACAACTCGACATTTCTTGATTGCGGCCCGGCTTTGTCTA
CGTACGTACCTCCCAACGCCACTCCATGTCGCTCGAACGTGACAGTCCAT
GAGGGCCGACCTCAAGGCCAAGACGGAGGCTCTGGCGACCAGCGAGAGGC
AGAGGGGGCAGTACGAGGCCATGGCTAAGTCCAAGCAGAAGCACGTGGAG
GCGCTCGAGGCTGCCGGCAAGGCCGCCAAGGAGGACCTGGAGGGCAAGGT
TAACGAGGCGCTGGCAAGGGCACAGGCTGCCGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14714:3430..4313+

>mRNA_Ecto-sp13_S_contig14714.3605.1 ID=mRNA_Ecto-sp13_S_contig14714.3605.1|Name=mRNA_Ecto-sp13_S_contig14714.3605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14714:3430..4313+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGAGAAGCTCACGGCCGCGGCCGCCGCAGCGGCCGCCTCGGAAAAGGT
CGCCGCAACGAAAGCGGTGGAGCTCAGCGCTCGCCTCAACGAGGCACGGG
CACGCCTCGTCACCGGCGGCGGCGGCGGGGCCGGGGCCGGGGGCGGCGGG
GCTGGTTCTGGAGGCGGAGTCAGCGGCGGCGGTGGTCTAGACGACGGCAT
GGCCGGGCAGCTGGCGGAGGTCGGGAAGCTTCAGATGGAGCTCGAGTCCA
TGAGGGCCGACCTCAAGGCCAAGACGGAGGCTCTGGCGACCAGCGAGAGG
CAGAGGGGGCAGTACGAGGCCATGGCTAAGTCCAAGCAGAAGCACGTGGA
GGCGCTCGAGGCTGCCGGCAAGGCCGCCAAGGAGGACCTGGAGGGCAAGG
TTAACGAGGCGCTGGCAAGGGCACAGGCTGCCGAA
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