mRNA_Ecto-sp13_S_contig1471.3601.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1471.3601.1
Unique NamemRNA_Ecto-sp13_S_contig1471.3601.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1471.3601.1 vs. uniprot
Match: A0A6H5K2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H6_9PHAE)

HSP 1 Score: 526 bits (1356), Expect = 1.540e-185
Identity = 277/299 (92.64%), Postives = 283/299 (94.65%), Query Frame = 1 
Query:    1 MEEQAAFWGPSSNLDTAQEQLNRQLCVAIERCVGRAVVVLDNVHLLQGEDLRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSEDMKRLSGKDRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEPTFVPAETKSAWRDARKGPAPEGVLDRANGFWREVVKVERGIRTALREADRDTLQAVGVVATAAAVLACAVYFREAASGAIGTIGGAAKGGSTGDSEGGGYNKKKGPGRIKNKAVASRGGSENDDSSRTTADGVKCQAPGDSDGPSMRVTRNRGRHPVETGTPSPGT 897
            MEEQAAFWGPSSNLD AQEQLNRQLCVAI+RCVGRAVVVLDNVHLLQGEDLRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSE MKRLSGKDRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEPTFVPAETKSAW+DARKGPAPEGVLDRANG WREVVKVERGIRTALRE DR+TLQAVGVVA AAAVLACAVYFREAA GAIGTIGGA KGGS GDSEGGG +KKKGPGRIK+KAV SRGGS NDDSS TTADGV+C APGDSDGPSM VTRNRGRHPVETGT  PGT
Sbjct:  145 MEEQAAFWGPSSNLDEAQEQLNRQLCVAIKRCVGRAVVVLDNVHLLQGEDLRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSEGMKRLSGKDRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEPTFVPAETKSAWQDARKGPAPEGVLDRANGVWREVVKVERGIRTALREMDRETLQAVGVVA-AAAVLACAVYFREAALGAIGTIGGATKGGSPGDSEGGGNDKKKGPGRIKDKAVGSRGGSGNDDSSETTADGVECHAPGDSDGPSMTVTRNRGRHPVETGTHGPGT 442
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BLAST of mRNA_Ecto-sp13_S_contig1471.3601.1 vs. uniprot
Match: D7FL46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL46_ECTSI)

HSP 1 Score: 457 bits (1175), Expect = 3.530e-160
Identity = 250/301 (83.06%), Postives = 255/301 (84.72%), Query Frame = 1 
Query:    1 MEEQAAFWGPSSNLDTAQEQLNRQLCVAIERCVGRAVVVLDNVHLLQGEDLRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSEDMKRLSGKDRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEPTFVPAETKSAWRDARKGPAPEGVLDRANGFWREVVKVERGIRTALREADRDTLQAVGVVATAAAVLACAVYFREAASGAIGTIGGAAKGGSTGDSEGGGYNKKKGPGRIKNKAVASRGGS--ENDDSSRTTADGVKCQAPGDSDGPSMRVTRNRGRHPVETGTPSPGT 897
            MEEQAAFWGPSSNLD AQEQLNRQLCVAIERCVGRAVVVLDNVHLLQGEDLRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSEDMKRLSGKDRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEP+FV   TKSAW+DARKGPAPEGVLDRANG WREVVKVERGIR ALREADRDTLQAVGVVATAAAVLACAVYFREAASGAI +   AAKGG  GDS  G                          DD SRTTADG + QA  +SDGPSMRVTRNRGRHPVETGTP PGT
Sbjct:    1 MEEQAAFWGPSSNLDKAQEQLNRQLCVAIERCVGRAVVVLDNVHLLQGEDLRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSEDMKRLSGKDRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEPSFVREGTKSAWQDARKGPAPEGVLDRANGVWREVVKVERGIRMALREADRDTLQAVGVVATAAAVLACAVYFREAASGAIVSFRDAAKGGPAGDSNDGXXXXXXXXXXXXXXXXXXXXXXXXNQDDPSRTTADGPQPQARSNSDGPSMRVTRNRGRHPVETGTPGPGT 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1471.3601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2H6_9PHAE1.540e-18592.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL46_ECTSI3.530e-16083.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1471contigEcto-sp13_S_contig1471:8121..11383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.8
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog157072.XP_008867217.1
Model size900
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E7RV@1,2SEAN@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_006680.1
Cds size900
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.0638695-CDS-Ecto-sp13_S_contig1471:8120..81681681462785.0638695-CDS-Ecto-sp13_S_contig1471:8120..8168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1471 8121..8168 +
1681462785.0733306-CDS-Ecto-sp13_S_contig1471:8539..86851681462785.0733306-CDS-Ecto-sp13_S_contig1471:8539..8685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1471 8540..8685 +
1681462785.0814745-CDS-Ecto-sp13_S_contig1471:9306..94431681462785.0814745-CDS-Ecto-sp13_S_contig1471:9306..9443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1471 9307..9443 +
1681462785.0897048-CDS-Ecto-sp13_S_contig1471:10380..106701681462785.0897048-CDS-Ecto-sp13_S_contig1471:10380..10670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1471 10381..10670 +
1681462785.0977466-CDS-Ecto-sp13_S_contig1471:11104..113831681462785.0977466-CDS-Ecto-sp13_S_contig1471:11104..11383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1471 11105..11383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1471.3601.1prot_Ecto-sp13_S_contig1471.3601.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1471 8121..11383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1471.3601.1

>prot_Ecto-sp13_S_contig1471.3601.1 ID=prot_Ecto-sp13_S_contig1471.3601.1|Name=mRNA_Ecto-sp13_S_contig1471.3601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
MEEQAAFWGPSSNLDTAQEQLNRQLCVAIERCVGRAVVVLDNVHLLQGED
LRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSEDMKRLSGK
DRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEPTFVPAETKSAWRDARKG
PAPEGVLDRANGFWREVVKVERGIRTALREADRDTLQAVGVVATAAAVLA
CAVYFREAASGAIGTIGGAAKGGSTGDSEGGGYNKKKGPGRIKNKAVASR
GGSENDDSSRTTADGVKCQAPGDSDGPSMRVTRNRGRHPVETGTPSPGT*
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mRNA from alignment at Ecto-sp13_S_contig1471:8121..11383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1471.3601.1 ID=mRNA_Ecto-sp13_S_contig1471.3601.1|Name=mRNA_Ecto-sp13_S_contig1471.3601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1471:8121..11383+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGCAAGCAGCTTTCTGGGGTCCGTCTAGCAACCTTGATACAGT
ATGTGCAACTTTAAGGAATCACGTTCACTGCAGCAGTAGAGCAAAGACCA
AACGTTCAGCTATGGGGAAAATCAGTTTATGCAATATGCTGGATTGGTGG
TTGTCTGCGTGTTTCATGAGCGGTGCATGCCGTCTTGTTGAAAACATGCA
CAAATCCGAGCAAAGTAGCACCAACAATCGTTCATTTTGTGCAACCCTTT
GTGTATACATATCTTGTTTTTTCGCGTGTGTTCTTACAGACCAGGGTGAA
CGAGACTGCCTCTTGGCGTGCTTGCTCAACGGATGTGACGTTGCCTGGAC
CGTTTGGTGTCGTGCGGTTAAACCTCAACACTACCTCTCTCTCGCACGTT
TTTGCCTGTGGGGCTGCAGGCACAAGAACAGCTGAACAGGCAGCTTTGTG
TCGCGATTGAACGGTGCGTTGGTAGGGCCGTGGTGGTGTTGGACAACGTG
CATCTCCTGCAAGGGGAAGACTTGAGAGTGCTGGACACCATGCTGTCGCT
CACAGACGGGCGTAAGTGAGTCAATCTTTCGCGAAAGCGGGGAGTGTTCA
GCCACGACCCATCTGGCCGCAATACGTCGCTTGTCGCTGGTTCGCTGTGA
CGGGCCGTCTTCTGTTTTGCTGCATGGCGCTTGGGGACGAAAAATGCAGC
AGACGAGTAGTTAAACCCTCCCCCAGAAAGCGAACGCTTTGTCCGCATGC
TGCCAACCCTGCGTCTTGTCGATTCTCAGCGTTTTCCGCATGTCAGCCAT
TGTTGAGAATTACAAACCTCTGTGTGCAAGCGGGTTGGTTGGCTGATGTA
GCTCTCGCGCTTACCAACTGTACCGCGCTGCTGTTCGTCTTTGATAAAAA
CCTTTTGTTCCAGCATGAGCAGGATGGTGTCCGCCTGCGACCGCTGTTCA
AAACCGTAGCGCGTTTGCCGAACGAGCATCGACCTGTCCAAGCACAGCTG
GCGAGCAATCTCTTTTGCTAACAGGATACACTTGCTGCTTAGCCAACCGA
TCACCATCAACAACGCCTGCTCGATGTGTTGCAGAGGGCAGTGCAATTCA
AGCTGTGCGTATACGCGACAGGTTCTGAAGGCCAAACGAATTTATCCAAC
GGTAACGTTTTGCTCATATTTTTTTGTTTTTGGCAGGTCGAACATGGAGT
GCAACGGCCATAAGGTTAGCGGAGAAGGGTGCCTGTTCTTGCTGCTGCTA
AACGAAGAAGGATCGGAGGACATGAAACGGCTGTCAGGGAAGGATCGACT
GCTGAGCGCATGGGAGTTCAGAGGTGATCGGAGATGTAGACTCTTGCCTT
GACCGTGACAATGGCTCTCCAAGAAGAAAACCGGGCGGCAATCATATCCA
TACCCGAAAATTCCTCGCGCCATCTACGCGTGGCACAGTTGAGAAATCTG
GTTTGGATTTTTGAACACGTGGGCCGACCGTGACATGAGCGGGCTGGGAT
TCGATGGCTCGGTGTGCTGTGTCGAGCGGCGCGGTGCCGTCTGCCGTCGT
TTGGGATGCAGCGATGGGTGGTATGTCCGGTGAAGGAGTAGCGTAGCGAT
CAGACATGTTCCCGGCATCGCGTCAACTCCTGCTCCCTAGTCAACAGTTA
CTTCGCGCCGATTTTCAGAGCATCAGCGTTGCTTATTGTACTCGTGATAT
GGTTTTGATGGAGGCTTTGTCTGTGATGCTTGTCAACTTCGCACGGGTGT
TTGTCTTTTTGCTGGCATTGCTCGGGCTGGTCGTACCGGAGGAATCGGTA
CTAGGCCCGCCGGCTGATGCGGACGGTCTTTTTTTTGTTCTTGGCTCAGA
GGGAGATCTTCGACGGACAAATGGTCGGAGAGCCTGGCGTTTGTTTGCGG
TAGGGTCAGCGGACGTACGTGACGGGTCCTCCTCCCGGCAACGTGCCGAT
CAGCCCATGTCTCGTCCATCCCCATCCCCGGGCGTGACAGCATGCCAATG
TCCCGATACCTCCGCCCGTCCCAATCCTTAGGTTTGAGATCGTAATTGTG
GCAACATGCCGATGTTCCGATTCCTTTGCCCGTCCCCATCCCCCTGTTGA
TAGTTCACAGTCGTAGCAACATGCCGGTGAACCCCATCGATCCCCATCCC
TAGGTATGACGGCGTGCCGATGTTCCGATACCTTTCCTGTTCCCATCCCC
GTGTGCAAAGTTCACAATCGTAGCAACATGCCGATGTCCCGATATCCCAC
CCATCCCCAGGTATGGAGTTCACGACCAGGGCATTTGTCGGGCGGGTGGA
CGTGGCGGTCAGCCTGTCAAAGGAGCCGACGTTCGTCCCCGCGGAGACCA
AGTCAGCCTGGCGGGACGCGAGGAAAGGACCCGCTCCCGAAGGGGTGCTC
GACCGAGCCAATGGCTTCTGGCGGGAGGTAGTCAAGGTTGAGCGGGGGAT
CAGGACGGCGTTGAGAGAAGCGGATCGAGATACGCTTCAGGCCGTCGGTG
TCGTTGCTACGGCTGCCGCGGTTTTGGCCTGTGCCGTCTACTTCCGTGAG
GTAGGTGAGGGGGGCTTGGCTTGAATGCTGTCTCGGAACCAAGACCAGGA
GGAATTCCCACGAGTTGTGTTGCTTGCGTGGTGGGGTCGCGAATGGATTG
TTGGCCGTCGGAAGCACCAACCAACGAAAGGTTTACGCGAGGCCTTCGGT
GTCGCTGCTACAGCAGTAGGTCCACATCTCCTCCGACGTTTGTTGATGCA
GGCGGTCGTGCAATCTGTATGAAACCCACGCAAAATATCGAGCAGGTTGT
TCCTGTGCAACGTCTTTGGCATGGCACGATCGTTCTTTACCACGTTTTTT
TGTCGCTGTAGCCTCACTGCTGTGCACATGAGATTTTCCTCCTGTGGCCG
AAGCTCGCACATCTATTTTTCGTCTGTAATATATTCTTCCGCCGATCACA
CTCAACGCCTGGCGGTTCTTTGACTTGAAACCAGGCCGCATCAGGCGCGA
TCGGCACCATCGGCGGAGCGGCGAAAGGGGGCTCCACGGGCGACTCCGAG
GGTGGTGGATATAACAAGAAGAAAGGCCCCGGTCGCATCAAGAACAAGGC
GGTCGCCTCGAGGGGGGGCAGCGAAAACGACGACTCATCACGAACGACAG
CAGACGGTGTAAAGTGCCAAGCCCCGGGCGACTCGGATGGCCCGAGCATG
AGGGTAACTCGTAATCGAGGCCGACACCCGGTCGAAACTGGCACCCCCAG
TCCCGGTACATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1471:8121..11383+

>mRNA_Ecto-sp13_S_contig1471.3601.1 ID=mRNA_Ecto-sp13_S_contig1471.3601.1|Name=mRNA_Ecto-sp13_S_contig1471.3601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1471:8121..11383+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGCAAGCAGCTTTCTGGGGTCCGTCTAGCAACCTTGATACAGC
ACAAGAACAGCTGAACAGGCAGCTTTGTGTCGCGATTGAACGGTGCGTTG
GTAGGGCCGTGGTGGTGTTGGACAACGTGCATCTCCTGCAAGGGGAAGAC
TTGAGAGTGCTGGACACCATGCTGTCGCTCACAGACGGGCGTAAGTCGAA
CATGGAGTGCAACGGCCATAAGGTTAGCGGAGAAGGGTGCCTGTTCTTGC
TGCTGCTAAACGAAGAAGGATCGGAGGACATGAAACGGCTGTCAGGGAAG
GATCGACTGCTGAGCGCATGGGAGTTCAGAGGTATGGAGTTCACGACCAG
GGCATTTGTCGGGCGGGTGGACGTGGCGGTCAGCCTGTCAAAGGAGCCGA
CGTTCGTCCCCGCGGAGACCAAGTCAGCCTGGCGGGACGCGAGGAAAGGA
CCCGCTCCCGAAGGGGTGCTCGACCGAGCCAATGGCTTCTGGCGGGAGGT
AGTCAAGGTTGAGCGGGGGATCAGGACGGCGTTGAGAGAAGCGGATCGAG
ATACGCTTCAGGCCGTCGGTGTCGTTGCTACGGCTGCCGCGGTTTTGGCC
TGTGCCGTCTACTTCCGTGAGGCCGCATCAGGCGCGATCGGCACCATCGG
CGGAGCGGCGAAAGGGGGCTCCACGGGCGACTCCGAGGGTGGTGGATATA
ACAAGAAGAAAGGCCCCGGTCGCATCAAGAACAAGGCGGTCGCCTCGAGG
GGGGGCAGCGAAAACGACGACTCATCACGAACGACAGCAGACGGTGTAAA
GTGCCAAGCCCCGGGCGACTCGGATGGCCCGAGCATGAGGGTAACTCGTA
ATCGAGGCCGACACCCGGTCGAAACTGGCACCCCCAGTCCCGGTACATAA
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