mRNA_Ecto-sp13_S_contig14708.3599.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14708.3599.1
Unique NamemRNA_Ecto-sp13_S_contig14708.3599.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14708.3599.1 vs. uniprot
Match: D8LF83_ECTSI (Putative respiratory burst oxidase homolog protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF83_ECTSI)

HSP 1 Score: 465 bits (1197), Expect = 4.710e-158
Identity = 242/252 (96.03%), Postives = 245/252 (97.22%), Query Frame = 1 
Query:    1 VLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTSTVHLTGNPDGEIKDAMSKLLSRSTNKFCTKKGKWVGDAEAGELLTHTSLHKLTHSSVHKHGDSFQSVFARARQHSQGTMLSDMEDDRTREDTTGWGEHGDMPPPVAHDVTLNFGRPDIAKFILDALNATPSATLTAGIGLSGTGATTGIGAAGTSPRSSGNTTKAATKRMNNQVTEHLDASQKKSRNVLIRASHSTVENIKK 756
            VLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTSTVHLTGNPD EIKDAMSKLLSRSTNKFCTKKGKWVGDAEAGELLTHTSLHKLTHSSVH+HGDS QSVFARARQHSQGTMLSD+EDDRTREDTTGWGEHGDMPPPVAHDVTLNFGRPDIAKFILDALNATPSATLTAGIGLSGTGATTGIGAA TSPRSSGNT  AATKRM+NQVTEHLDASQKKSR VLIRAS STVENIKK
Sbjct:  430 VLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTSTVHLTGNPDEEIKDAMSKLLSRSTNKFCTKKGKWVGDAEAGELLTHTSLHKLTHSSVHRHGDSLQSVFARARQHSQGTMLSDIEDDRTREDTTGWGEHGDMPPPVAHDVTLNFGRPDIAKFILDALNATPSATLTAGIGLSGTGATTGIGAARTSPRSSGNTANAATKRMDNQVTEHLDASQKKSRTVLIRASTSTVENIKK 681
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BLAST of mRNA_Ecto-sp13_S_contig14708.3599.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.350e-20
Identity = 61/184 (33.15%), Postives = 88/184 (47.83%), Query Frame = 1 
Query:    1 VLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTSTVHLTGNPDGEIKDAMSKLLSRSTNKFCTKKGKWVGDA---EAGELLTHTSLHKLTHSSVHKHGDSFQSVFARARQHSQGTMLSDMEDDRTREDTTGWGEHGDMPPPVAHDVTLNFGRPDIAKFILDALNATPS 543
            V+++CTGAGITPA+ +AD  + KKN+HLMW++R+ GM+A FEKQLR V STVHLTG P  + K  ++ LL+ S      + G    D    EAG     +        +    GD  + +   +                                P    ++LNFGRPDI KF+ + +  + S
Sbjct:  302 VIMVCTGAGITPAICLADMLSKKKNVHLMWLSREAGMVATFEKQLRRVNSTVHLTGKPTEKTKQRLTDLLAHSKAPPPAETGSSCSDPTDLEAGFAAARSRNDDFDDGAYGAGGD-MEDLGGCSSNRXXXXXXXXXXXXXXXXXXXXXXXKRLRRTPFGKPISLNFGRPDIEKFLTETIRGSSS 484
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BLAST of mRNA_Ecto-sp13_S_contig14708.3599.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.270e-19
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 VLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTSTVHLTGNPDGEIKDAMSKLLSRS 219
            VLL+CTGAGITPAV+VA+RF  KKNIHL+W  RD GM+A+FEKQLR V STV LTG P  + K  M  LL+ S
Sbjct:  559 VLLVCTGAGITPAVSVAERFQKKKNIHLLWCCRDAGMVAMFEKQLRRVKSTVFLTGKPTNKTKKRMVDLLAPS 631
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BLAST of mRNA_Ecto-sp13_S_contig14708.3599.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.480e-10
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   28 ITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTSTVHLTGNPDGEIKDAMSKLLSRS 219
            I+ A+ +   F  KKNIHL+W  RD GM+A+FEKQLR V STV+LTG P  + K  M  LL+ S
Sbjct:  550 ISEAIELEPVFQKKKNIHLLWCCRDAGMVAMFEKQLRRVKSTVYLTGKPTNKTKKRMVDLLAPS 613
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BLAST of mRNA_Ecto-sp13_S_contig14708.3599.1 vs. uniprot
Match: A0A6H5JAC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.050e-6
Identity = 44/162 (27.16%), Postives = 69/162 (42.59%), Query Frame = 1 
Query:   85 MWIARDHGMMALFEKQLRMVTSTVHLTGNPDGEIKDAMSKLLSRS-------TNKFCTKKGKWVGDAEAGELLTHTSLHKLTHSSVHKHGDSFQSVFARARQHSQGTMLSDMEDDRTREDTTGWGEHGDMPPPVAHDVTLNFGRPDIAKFILDALNATPSAT 549
            MW++R+ GM+A FEKQLR V STVHLTG P  + K  ++ LL+ S       T   C+       D EAG      S +       +  G   + +   +                                P  + ++LNFGRPDI KF+ + ++ + +++
Sbjct:    1 MWLSREAGMVATFEKQLRRVKSTVHLTGKPTDKTKQRLTDLLAHSSAPPPVGTGSSCSD----PTDLEAG-FAAARSRNDDFDDGAYGAGGEMEDLGGCSSNXXXXXXXXXXXXXXXXXXXXXXXXKRLRRTPFGNPISLNFGRPDIEKFLTEIIHGSSTSS 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14708.3599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LF83_ECTSI4.710e-15896.03Putative respiratory burst oxidase homolog protein... [more]
D7G8C4_ECTSI8.350e-2033.15Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JHI2_9PHAE1.270e-1965.75FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C8_ECTSI6.480e-1053.13Putative respiratory burst oxidase protein n=1 Tax... [more]
A0A6H5JAC5_9PHAE4.050e-627.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14708contigEcto-sp13_S_contig14708:333..3539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score100.5
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7G8C4
Model size756
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
Ec32 ortholog descriptionputative respiratory burst oxidase homolog protein
Ec32 orthologEc-01_003990.1
Cds size756
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14708.3599.1prot_Ecto-sp13_S_contig14708.3599.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14708 333..3539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.902359-CDS-Ecto-sp13_S_contig14708:332..3881681462784.902359-CDS-Ecto-sp13_S_contig14708:332..388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14708 333..388 +
1681462784.917139-CDS-Ecto-sp13_S_contig14708:897..9731681462784.917139-CDS-Ecto-sp13_S_contig14708:897..973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14708 898..973 +
1681462784.9257116-CDS-Ecto-sp13_S_contig14708:1304..14391681462784.9257116-CDS-Ecto-sp13_S_contig14708:1304..1439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14708 1305..1439 +
1681462784.9349155-CDS-Ecto-sp13_S_contig14708:1947..20971681462784.9349155-CDS-Ecto-sp13_S_contig14708:1947..2097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14708 1948..2097 +
1681462784.947657-CDS-Ecto-sp13_S_contig14708:2457..27091681462784.947657-CDS-Ecto-sp13_S_contig14708:2457..2709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14708 2458..2709 +
1681462784.9580088-CDS-Ecto-sp13_S_contig14708:3452..35391681462784.9580088-CDS-Ecto-sp13_S_contig14708:3452..3539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14708 3453..3539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14708.3599.1

>prot_Ecto-sp13_S_contig14708.3599.1 ID=prot_Ecto-sp13_S_contig14708.3599.1|Name=mRNA_Ecto-sp13_S_contig14708.3599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
VLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTS
TVHLTGNPDGEIKDAMSKLLSRSTNKFCTKKGKWVGDAEAGELLTHTSLH
KLTHSSVHKHGDSFQSVFARARQHSQGTMLSDMEDDRTREDTTGWGEHGD
MPPPVAHDVTLNFGRPDIAKFILDALNATPSATLTAGIGLSGTGATTGIG
AAGTSPRSSGNTTKAATKRMNNQVTEHLDASQKKSRNVLIRASHSTVENI
KK
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mRNA from alignment at Ecto-sp13_S_contig14708:333..3539+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14708.3599.1 ID=mRNA_Ecto-sp13_S_contig14708.3599.1|Name=mRNA_Ecto-sp13_S_contig14708.3599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14708:333..3539+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTACTCATCTGCACCGGAGCAGGCATCACCCCGGCCGTCGCCGTCGC
CGACAGGTGAAAGAGATATGCGGTACAAGTGCAAATGTTTCAAACTTGTT
CACAACAACAAACAGGCGAGGAAATATTTTTTTTTGCCTCAAAACTTCGA
CAGAATTAATGGTTTGAGTAAGTATCCGCATATTTTTCGAGGTTGCCAAT
CTCGCCATGACCCAACAGCGTCCCGATTGCCTCGGGAAGTGTGAATGAAT
GGGTTTCCGCTCAAGCCACGTACACGGGGATGGGCCAAACGTGAAGATGG
GTGGGCGGCGGTGAACGGTTATGATCCTCGCCGGTCACGGCGTTGGCGCC
ACTGATCTTTCTTTTTCTGCGTGCTGACACCTGTCTCTTCTTCCTCTGTG
TGGTTAGAAGGAAAAAGAAAGACGAAGACACGCTGATCTTTTATTACGAG
TACCTTTGTTCGCAAAATTGTTTGTCCAACCAGTGTGAAGCCTCTCTTGT
TTTCTCATGTTCCCGCGGGTTATCTTCAGCTTGTTCTTGACGGTGGTCTG
ACGCGGATGTTCCAGGTTCGCGGCGAAAAAGAACATTCACCTGATGTGGA
TCGCAAGGGACCACGGCATGATGGCGCTCTTCGAGAAGCAGGTGCGCGGA
TGCACCCTCAAGCGCGTGGGAATGTTGAGAGGGCACGTGTGCGAACTTGA
ACTGCACATAGCTACTGCTTGGCGTCTGTTTTATGCACCGTTGCACCAAA
CTGGACAACAGGGCGTGTCGTGACGATGGTCCACCCATTTCGACCTTTGA
GAAGGAACCTCCGCGTTTCGTGACGGTCAAATGGAAAAGGCACCAGTGTG
TTTTGGTGCCTCGTAGATGTGATTTCCCCTGCCACGGCTAGCTATGTGCT
ACTTGCCAGGGTGTTGTCCCGCCCACTTTACTGTCTCGTACGATGCTGCA
TGCCTTGATGTATGTTTCTCAGCTGAGGATGGTGACCAGCACGGTGCATC
TCACCGGCAACCCCGACGGAGAGATCAAGGATGCCATGTCCAAGCTCCTC
TCCCGCTCTACGAACAAGTTTTGCACCAAGAAGGGGAAGTGGGTCGGAGA
TGCCGAGGTGGGTGACGCTTCACCAAGCTCGGGTTCCAGCATGGTTTGGG
AATCGAGGCAAAGTACACCACGCGAGCTTCTGCGAGTGGCACGTCTGAGC
CCACCGCCGTCGCCCCACCGCCGTAGGTTTCCTCCGCCACGTATTCGGTC
GTGAATACAGCTCTTCGTGTGCGAACGTGCTCCACGTTTGTGGCCCTGCG
TAACTCCCTTTCTCGTCATTGTTGTAGTAGTTTTGGTCGTGCCCTCTGCG
TGGTTGAGTCTGTTTTGTAAGTCCGAAAAACGCCGACAACTGGCGTGTTT
CCTTCGCTCTTACTCCACCCGAGAAATACTTCTCGTTTTAATTTTTGCAG
TTGTTTCAATTTTTTTCACCGTATTCTTGACTGGTAAAGTGTGTGTTACT
TTCTTCCCATAGTTTATTGAACGAGCAGCTACAGCTTTTTTTCTCTCTTA
CAACAAGTCGCATTCCCCTCGTTTTTAATTTTCTGCGGTGCACGTCATTG
ATTGGCGCGCGTCAGGCGGGGGAACTACTGACGCATACGTCTCTTCACAA
GCTGACGCACTCGTCGGTGCACAAGCACGGCGACAGCTTCCAGTCCGTGT
TCGCCCGTGCGAGGCAACACTCTCAAGGCACCATGCTCAGCGACATGGAA
GACGACAGGACGAGGGTGAGTACGTGGGTTTATTTGTTTTGCATGCGAGA
GCTTACGGACCTCATCTCGCTAGGTATTACCGTCCATCACTCCTACTCGT
GTTCGTTGCACACTCCCGTGTACTCCCGCACGGTCGTCCACTTTCTTTCT
TCTCCTGCATTGGTATATTCATCATACTGTTTCCCCCCCACTCCCGGCAC
GCGCGCGCACCTTCCCCCAAACGTTTTCCTTGACTGAAACCTCATACTTG
CATCAACGGAGTAAAAAAGTGAACCTCCGTCGCAAAACACGTCCATTTCC
GTCACTTTGTGTTTTTGAGAAACAACGTGCCAAATATTATTATTTTTCGC
TCGGCCGTCGCCCTTTCGTTTCCAGGAAGACACCACCGGCTGGGGAGAGC
ACGGTGACATGCCTCCCCCCGTGGCCCACGACGTCACCCTCAACTTCGGC
CGACCCGACATTGCCAAGTTTATCCTGGACGCCCTGAACGCTACTCCATC
GGCGACCCTCACCGCGGGCATCGGCTTGTCTGGCACCGGAGCGACTACGG
GGATAGGAGCGGCGGGGACGTCTCCCAGGTCCAGCGGAAACACCACAAAG
GCGGCCACCAAGAGGATGAACAACCAGGTTTGTGTCTTGCGCGAAAGCGC
AAGGCATGCAAGGCTATGTATTGTCTATGCTCTAGCCCGTCTACTTCACG
CCTGTAGTAAGAAGAGAGAGAGGCTAGCCCAACACTGCCCCCTCCCCCGT
AGCGGGGGGGGGTGTCTCTACTCTTGCAGATGCAAAGCAGATGACTAATG
AGACGACGAAGAAATTAGAAAACACGACGAATAAGCACATTGGCGAACCA
CTAAGGCAAGAGTACCAACTGTTCCTGTGCCGTGACTCGCGCAAAAACGG
TGCTCGTGAGCTACTCGTTGCACGATGCTTGTTTCGCAGGCCGACGACGG
CGTTGGATGGCGAACATGCTTGTGCATTCCCTGACGAGACTATCGGCGTG
TTGCCTCTGTTATTTCGGGGGCACCTTCGGTTGATGTATGACACAGATGT
GTGTGGTGTATTCGCCGACCACCCAGCGGTGCTGGCGCGTTTGATGTACC
ATGGTCTGCATACCCTTGAACACATCCCGTGCAAAGACTCTGCGGACGTT
TACAATCCATTTGTTTGCTAGATAAAGAAAAACACATCTTCGTACTGGAG
TATCTTTTGGTAAGCCAGTGAGAACTATGGCACGCGCGCGCCATCCCATC
CCAACCTATCGCTTTCATCGCGTACGACCGACTGCGTGCACAACGCACGA
CAAACATCAACTCCGTTGTTACATCACGGCCTCAGCTCCCTCCTCCTCGT
CATCTTCCTTCCCCGTGAAGGTGACCGAGCACCTGGATGCATCCCAGAAG
AAATCGCGGAACGTGCTTATCAGGGCGAGCCACAGCACCGTGGAGAACAT
CAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14708:333..3539+

>mRNA_Ecto-sp13_S_contig14708.3599.1 ID=mRNA_Ecto-sp13_S_contig14708.3599.1|Name=mRNA_Ecto-sp13_S_contig14708.3599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14708:333..3539+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTACTCATCTGCACCGGAGCAGGCATCACCCCGGCCGTCGCCGTCGC
CGACAGGTTCGCGGCGAAAAAGAACATTCACCTGATGTGGATCGCAAGGG
ACCACGGCATGATGGCGCTCTTCGAGAAGCAGCTGAGGATGGTGACCAGC
ACGGTGCATCTCACCGGCAACCCCGACGGAGAGATCAAGGATGCCATGTC
CAAGCTCCTCTCCCGCTCTACGAACAAGTTTTGCACCAAGAAGGGGAAGT
GGGTCGGAGATGCCGAGGCGGGGGAACTACTGACGCATACGTCTCTTCAC
AAGCTGACGCACTCGTCGGTGCACAAGCACGGCGACAGCTTCCAGTCCGT
GTTCGCCCGTGCGAGGCAACACTCTCAAGGCACCATGCTCAGCGACATGG
AAGACGACAGGACGAGGGAAGACACCACCGGCTGGGGAGAGCACGGTGAC
ATGCCTCCCCCCGTGGCCCACGACGTCACCCTCAACTTCGGCCGACCCGA
CATTGCCAAGTTTATCCTGGACGCCCTGAACGCTACTCCATCGGCGACCC
TCACCGCGGGCATCGGCTTGTCTGGCACCGGAGCGACTACGGGGATAGGA
GCGGCGGGGACGTCTCCCAGGTCCAGCGGAAACACCACAAAGGCGGCCAC
CAAGAGGATGAACAACCAGGTGACCGAGCACCTGGATGCATCCCAGAAGA
AATCGCGGAACGTGCTTATCAGGGCGAGCCACAGCACCGTGGAGAACATC
AAGAAG
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