mRNA_Ecto-sp13_S_contig14705.3598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14705.3598.1
Unique NamemRNA_Ecto-sp13_S_contig14705.3598.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14705.3598.1 vs. uniprot
Match: D7FJI6_ECTSI (MORN repeat variant family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJI6_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.170e-41
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 FVVFVSHRWINESTRPTEFWKHGGGQDFGEGSPDVDSAKHTFLVEGLHSILASLPREVAVFLWIDYSCIDQ 213
            FVVFVSHRWINES+RPTEFWKHGGGQDFGEGSPDVDSAKHTFLVEGLHSILASLPREVAVFLWIDYSCIDQ
Sbjct:  157 FVVFVSHRWINESSRPTEFWKHGGGQDFGEGSPDVDSAKHTFLVEGLHSILASLPREVAVFLWIDYSCIDQ 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14705.3598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJI6_ECTSI1.170e-4198.59MORN repeat variant family protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14705contigEcto-sp13_S_contig14705:3947..4168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score152.9
Seed ortholog evalue5.8e-35
Seed eggNOG ortholog2880.D7FJI6
Model size222
KEGG koko:K03283,ko:K20178
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04138,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04138,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-04_006260.1
Cds size222
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.864608-CDS-Ecto-sp13_S_contig14705:3946..41681681462784.864608-CDS-Ecto-sp13_S_contig14705:3946..4168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14705 3947..4168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14705.3598.1prot_Ecto-sp13_S_contig14705.3598.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14705 3947..4168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14705.3598.1

>prot_Ecto-sp13_S_contig14705.3598.1 ID=prot_Ecto-sp13_S_contig14705.3598.1|Name=mRNA_Ecto-sp13_S_contig14705.3598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
FVVFVSHRWINESTRPTEFWKHGGGQDFGEGSPDVDSAKHTFLVEGLHSI
LASLPREVAVFLWIDYSCIDQVRK
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mRNA from alignment at Ecto-sp13_S_contig14705:3947..4168-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14705.3598.1 ID=mRNA_Ecto-sp13_S_contig14705.3598.1|Name=mRNA_Ecto-sp13_S_contig14705.3598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14705:3947..4168- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTGGTGTTCGTGTCGCATCGCTGGATTAACGAGTCCACCCGACCGAC
GGAGTTCTGGAAGCACGGGGGAGGGCAGGACTTCGGGGAGGGATCGCCAG
ACGTTGATTCAGCCAAGCACACGTTTCTCGTCGAAGGTTTGCACTCGATC
TTGGCTTCTCTTCCGCGGGAAGTTGCGGTGTTTTTGTGGATCGACTATTC
CTGCATAGATCAGGTGAGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14705:3947..4168-

>mRNA_Ecto-sp13_S_contig14705.3598.1 ID=mRNA_Ecto-sp13_S_contig14705.3598.1|Name=mRNA_Ecto-sp13_S_contig14705.3598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14705:3947..4168- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTGGTGTTCGTGTCGCATCGCTGGATTAACGAGTCCACCCGACCGAC
GGAGTTCTGGAAGCACGGGGGAGGGCAGGACTTCGGGGAGGGATCGCCAG
ACGTTGATTCAGCCAAGCACACGTTTCTCGTCGAAGGTTTGCACTCGATC
TTGGCTTCTCTTCCGCGGGAAGTTGCGGTGTTTTTGTGGATCGACTATTC
CTGCATAGATCAGGTGAGAAAG
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