mRNA_Ecto-sp13_S_contig14685.3584.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14685.3584.1
Unique NamemRNA_Ecto-sp13_S_contig14685.3584.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14685.3584.1 vs. uniprot
Match: A0A6H5JE59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE59_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.120e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 VSHQVVSRDGDGTYTVRFKSPTKVPGAIGARMKESGVSESDMREV 135
            V  QVVSRDGDGT+TVRF+SPTKVPGA GARMKESGVSESDMREV
Sbjct:  347 VPAQVVSRDGDGTFTVRFRSPTKVPGATGARMKESGVSESDMREV 391
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BLAST of mRNA_Ecto-sp13_S_contig14685.3584.1 vs. uniprot
Match: D7FKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.190e-13
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 VSHQVVSRDGDGTYTVRFKSPTKVPGAIGARMKESGVSESDMREV 135
            V  QVVSRDGDGTYTVRFKSPTKVPGA GA MK+SGVSESDMREV
Sbjct:  605 VPAQVVSRDGDGTYTVRFKSPTKVPGATGACMKQSGVSESDMREV 649
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14685.3584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE59_9PHAE1.120e-1388.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKD6_ECTSI6.190e-1388.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14685contigEcto-sp13_S_contig14685:46..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1170
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionAgenet-like domain
Ec32 orthologEc-05_005810.2
Cds size1170
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462783.6907778-CDS-Ecto-sp13_S_contig14685:45..1771681462783.6907778-CDS-Ecto-sp13_S_contig14685:45..177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14685 46..177 +
1681462783.702867-CDS-Ecto-sp13_S_contig14685:314..5571681462783.702867-CDS-Ecto-sp13_S_contig14685:314..557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14685 315..557 +
1681462783.7136402-CDS-Ecto-sp13_S_contig14685:853..12811681462783.7136402-CDS-Ecto-sp13_S_contig14685:853..1281Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14685 854..1281 +
1681462783.7215183-CDS-Ecto-sp13_S_contig14685:1860..20061681462783.7215183-CDS-Ecto-sp13_S_contig14685:1860..2006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14685 1861..2006 +
1681462783.7300434-CDS-Ecto-sp13_S_contig14685:2661..28821681462783.7300434-CDS-Ecto-sp13_S_contig14685:2661..2882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14685 2662..2882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14685.3584.1prot_Ecto-sp13_S_contig14685.3584.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14685 46..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14685.3584.1

>prot_Ecto-sp13_S_contig14685.3584.1 ID=prot_Ecto-sp13_S_contig14685.3584.1|Name=mRNA_Ecto-sp13_S_contig14685.3584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=390bp
VSHQVVSRDGDGTYTVRFKSPTKVPGAIGARMKESGVSESDMREVISQAP
PPRKTPKTGGWLSSLGTWRGGEQSNEKKGKTGVSILGRLRRLFVRDRGDR
DVSRTTKAKRSSRKKSASSARRPREARTRRRRSESPDSDSSSSGRSSAYA
TEPERTPRRLSPTSAAGSQPRQDHHGRRRPSRDRQSGGSSPPSAGSGSGG
DGVFWSDEEEQPAGGGDRGWGVARSPSRSRSPSRSRSPVQSPPSPVPYSS
PQTRRRSRRGDSNGGGPRRIAELPVIQEGMSTPRGHILTSPRRTPSGSRK
PSSSGVRKPSNHGREARRGSGGLKSLETLERGNIEDKFDLYKKRTKNALS
PEKRGSGKVSRGRRDGRSASSSMDRRMSTAAPTASVLSP*
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mRNA from alignment at Ecto-sp13_S_contig14685:46..2882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14685.3584.1 ID=mRNA_Ecto-sp13_S_contig14685.3584.1|Name=mRNA_Ecto-sp13_S_contig14685.3584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14685:46..2882+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCACACCAGGTGGTGTCAAGAGACGGGGATGGCACCTACACCGTTCG
ATTCAAGTCTCCGACAAAGGTCCCAGGCGCAATTGGTGCCCGTATGAAGG
AATCCGGTGTATCTGAGTCCGACATGAGAGAGGTACGTGAGAACCATGGG
GGTGATACGCACACCGAGTCGCTGTCCATCCGTAGAATCACCTATGGCGT
TGAACCCTATCCAGAAGAACGTGAATCCGAACTCTGGGCAACTACGCTGG
GTGTTTTGTTGTCAAGCAGGTGATATCCCAGGCACCCCCTCCGAGGAAAA
CACCGAAGACGGGTGGATGGTTGAGCTCGTTGGGAACATGGCGGGGTGGT
GAACAATCGAACGAGAAGAAGGGCAAGACTGGAGTTTCGATATTGGGGCG
GCTGAGGAGATTGTTCGTGAGAGATCGGGGTGATAGGGATGTCAGCCGGA
CGACGAAAGCCAAGCGGAGCAGCAGAAAAAAGTCGGCATCTTCCGCACGG
AGGCCACGCGAGGTGAAACGTTGACGTCGAAGTTTCACCGGCAATGGGGC
GATGCAGTCGTCCCGGTGGAAATAAGTCATGCAGGCAGCTATTCACGTAA
ACGGTGTCCGTGCCGTTAGCTTGCACCGAAGACGTGAGTGAGTTCCCTAT
TCCAGAATACTGTTAAACTTTCAGAAATGGTCTCATGTACCTTATCTGGA
TGTTTGTGAGACATCACTCGGCGTATTTTGTGCCGTTCGAAGAGTTCCGT
CCCGCGTTTACGCCACACAACCCGCCACCTGGAACTCTATCAACGTCCGT
GGGCACAGGCTAGAACACGCCGAAGGCGGAGCGAATCCCCGGACTCTGAC
AGCAGCAGCAGCGGCAGGAGCAGCGCCTACGCCACGGAGCCAGAGCGCAC
CCCTCGCCGCCTCTCGCCCACCTCTGCAGCCGGCAGCCAACCCCGCCAAG
ACCACCACGGTCGACGACGACCCAGTCGGGACCGACAAAGCGGCGGATCA
TCACCTCCCTCTGCAGGGAGCGGGAGCGGCGGGGATGGCGTGTTTTGGTC
GGATGAGGAAGAGCAGCCTGCTGGCGGCGGTGATAGGGGCTGGGGTGTCG
CCCGTTCCCCTTCCCGCTCTCGGTCCCCTTCAAGGTCTCGATCCCCTGTG
CAGTCGCCGCCTTCACCTGTTCCTTACTCTTCGCCCCAGACGAGAAGGAG
GAGCCGGAGGGGAGATAGCAATGGAGGAGGACCAAGGTAAGGCTCGGGGG
TGGAGAAGATTGAGAGGCGTCAGGGTGAGACCAGGAAGACATTCAGGGGG
AGAAAGAAGCACGAGATTCTGTGTTGGCAGTAACCAGAAAGCGTTCATCG
CACCTTACCACAAGCGCATACTTTGTGCGGGGTCTGCAGGTTAGTTGATA
CTGGCGTTGAAGTAGGACCTCCGTGTGACGGAATCGTCCTTATACCTCTC
GTTAACGATGGTACATCAGGGCAACGATACGCGGTTTTCATCAAGCCTAG
CTTTGTGTCTCTATGATACCGTGTCCAGATGGCTTGGGTGGTGCGAGGTA
CACTTGTGACGGAACATCCGGCACTGTCGTGCACCAACATCCTATGTCAA
GTCGATGGAGCTGCAACCTACTACAGTTTACGCGCTCCACCGTTGGATGC
GGCCTACTGTAACAGCCAGGTTAAGGCCCTCAGTGACCTTCCATTCACGA
ACCCATCCCATCCCTCTCGCGTACCCGGATGTAACATCGTCGCAACTGCA
TAGTACAGGATCAAATGACTGGTCGCGTGATCGAAAGCTCTCTTACTCCC
CCTGGTCCCTCGCAGGAGAATAGCCGAACTCCCTGTGATTCAGGAAGGCA
TGTCCACGCCACGGGGGCATATCCTCACCAGTCCGCGACGAACACCATCT
GGATCGAGGAAACCATCCTCCTCTGGCGTCAGGAAACCAAGCAACCACGG
AAGGGAAGCAAGTGAGTGACTGCTGTAGAAATTCTCTGATTCGGTATGTC
TTGCGCATCGACTTCCTGTACAGAACAACGCAGGCCGATCCTTGGTGCCT
TCTTTTCATCGTCCTACCGAATGCAGCTCTCTTCGTCTTGCCATAATCCC
TCGTGCTCTATGGGAAGCCCACTCTCCTGCGGCTACGGCAGGACGGTAGC
GCAGCGGGCTTTACATACGTTCCAGGCATGTCGGGGCCACGTTTTGCAAA
GATATTATGCGGTCCAGTTGTACGACCGCAAAAAAGGCGCGTTCGTTACG
CGTTGTTGATGCTATTAATAGGTTGTTTTGGGCGAGATGCAAGCAGACCC
AAATTTTAGTGTTATGCACAATCAAACGAACCCGGCGTGTCTCCAATGCA
CCTACTGGTGATACGTGCCGGCGCCGTCAAAAATTACAGCATTTGTGTCG
CAGTAGACACTTCGTGGTGATCAACGTAAGCAAAGTTTCACAGTGGCGGG
GGATGATTCTTGCTCAACACTTGGTGGGGTTGGATTGTCGAAGCCCGTTC
TAGTGTAGTGATGTCCGTTTCGAAAGTGCCACTGTTGAATCACCCTTGCC
GCTGTTCCTCGAGAAACAAGAAACGACGTCACATTTTTTCCCGTTCATGC
CCAAACCAAATTCAAGGGAGAGGCAGTGGGGGGTTGAAATCGCTAGAAAC
CCTCGAGCGGGGCAACATCGAAGACAAGTTTGACCTGTACAAGAAGAGGA
CCAAGAACGCTCTGTCTCCGGAAAAGCGTGGATCGGGAAAGGTATCAAGA
GGAAGGCGCGATGGCCGTAGCGCCAGTAGCAGCATGGACCGGCGGATGAG
CACGGCTGCCCCCACGGCGTCTGTTCTCTCCCCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14685:46..2882+

>mRNA_Ecto-sp13_S_contig14685.3584.1 ID=mRNA_Ecto-sp13_S_contig14685.3584.1|Name=mRNA_Ecto-sp13_S_contig14685.3584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14685:46..2882+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCACACCAGGTGGTGTCAAGAGACGGGGATGGCACCTACACCGTTCG
ATTCAAGTCTCCGACAAAGGTCCCAGGCGCAATTGGTGCCCGTATGAAGG
AATCCGGTGTATCTGAGTCCGACATGAGAGAGGTGATATCCCAGGCACCC
CCTCCGAGGAAAACACCGAAGACGGGTGGATGGTTGAGCTCGTTGGGAAC
ATGGCGGGGTGGTGAACAATCGAACGAGAAGAAGGGCAAGACTGGAGTTT
CGATATTGGGGCGGCTGAGGAGATTGTTCGTGAGAGATCGGGGTGATAGG
GATGTCAGCCGGACGACGAAAGCCAAGCGGAGCAGCAGAAAAAAGTCGGC
ATCTTCCGCACGGAGGCCACGCGAGGCTAGAACACGCCGAAGGCGGAGCG
AATCCCCGGACTCTGACAGCAGCAGCAGCGGCAGGAGCAGCGCCTACGCC
ACGGAGCCAGAGCGCACCCCTCGCCGCCTCTCGCCCACCTCTGCAGCCGG
CAGCCAACCCCGCCAAGACCACCACGGTCGACGACGACCCAGTCGGGACC
GACAAAGCGGCGGATCATCACCTCCCTCTGCAGGGAGCGGGAGCGGCGGG
GATGGCGTGTTTTGGTCGGATGAGGAAGAGCAGCCTGCTGGCGGCGGTGA
TAGGGGCTGGGGTGTCGCCCGTTCCCCTTCCCGCTCTCGGTCCCCTTCAA
GGTCTCGATCCCCTGTGCAGTCGCCGCCTTCACCTGTTCCTTACTCTTCG
CCCCAGACGAGAAGGAGGAGCCGGAGGGGAGATAGCAATGGAGGAGGACC
AAGGAGAATAGCCGAACTCCCTGTGATTCAGGAAGGCATGTCCACGCCAC
GGGGGCATATCCTCACCAGTCCGCGACGAACACCATCTGGATCGAGGAAA
CCATCCTCCTCTGGCGTCAGGAAACCAAGCAACCACGGAAGGGAAGCAAG
GAGAGGCAGTGGGGGGTTGAAATCGCTAGAAACCCTCGAGCGGGGCAACA
TCGAAGACAAGTTTGACCTGTACAAGAAGAGGACCAAGAACGCTCTGTCT
CCGGAAAAGCGTGGATCGGGAAAGGTATCAAGAGGAAGGCGCGATGGCCG
TAGCGCCAGTAGCAGCATGGACCGGCGGATGAGCACGGCTGCCCCCACGG
CGTCTGTTCTCTCCCCCTGA
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