prot_Ecto-sp13_S_contig14661.3569.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14661.3569.1
Unique Nameprot_Ecto-sp13_S_contig14661.3569.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length138
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14661.3569.1 vs. uniprot
Match: D8LH43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH43_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 2.170e-66
Identity = 120/144 (83.33%), Postives = 123/144 (85.42%), Query Frame = 0 
Query:    1 MGMGAFFFGLAAAPLVLCSAFVPPAGFRSSAFTAAAAGGFP--SRAGPVLAAERLPFFMSVAGNSGGDHAQHQPDQKEARSSRARFVGRVTAGVAAATAASGLAAGVFGLGAAPV----TGKYSSKATARKRYLPRIVKLVNVF 138
            MGMGAFF GLAAAPL LCSAFVPPAGFRSSA TAAAAGGFP  SR GPVLAAERLP FMSVAGN  GDHAQHQPDQKEARSSRA+FVGRV+AGV AATAASGL     G+GA PV    TGKYSSKATARKRYLPRIVKLVN F
Sbjct:    1 MGMGAFFLGLAAAPLFLCSAFVPPAGFRSSASTAAAAGGFPASSREGPVLAAERLPLFMSVAGNGDGDHAQHQPDQKEARSSRAQFVGRVSAGVVAATAASGLXXXXLGVGAGPVFADSTGKYSSKATARKRYLPRIVKLVNAF 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14661.3569.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH43_ECTSI2.170e-6683.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..138
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.76
NoneNo IPR availableTMHMMTMhelixcoord: 88..110
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14661contigEcto-sp13_S_contig14661:2..2195 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14661.3569.1mRNA_Ecto-sp13_S_contig14661.3569.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14661 2..2195 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14661.3569.1 ID=prot_Ecto-sp13_S_contig14661.3569.1|Name=mRNA_Ecto-sp13_S_contig14661.3569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MGMGAFFFGLAAAPLVLCSAFVPPAGFRSSAFTAAAAGGFPSRAGPVLAA
ERLPFFMSVAGNSGGDHAQHQPDQKEARSSRARFVGRVTAGVAAATAASG
LAAGVFGLGAAPVTGKYSSKATARKRYLPRIVKLVNVF
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