mRNA_Ecto-sp13_S_contig14613.3544.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14613.3544.1
Unique NamemRNA_Ecto-sp13_S_contig14613.3544.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14613.3544.1 vs. uniprot
Match: A0A6H5K265_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K265_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 2.430e-118
Identity = 247/282 (87.59%), Postives = 250/282 (88.65%), Query Frame = 1 
Query:  118 NSQDYARRELAAEIRENEVQPQKFRADAAERDLSELRQAAHGWLSAAHALKLEAVAEARENGFAEGRGDLLEQLERSHRERLALREEVLVARTEAVDAIAAMGEAGAAALVKSRDVWRAEGRAAAEQGLPAGEDVAAEVRDAFAAYVVSAHEQRLVAVARERERAGEAARELSRXLARANEMLAALSKERSIETEVMQDPILNEVAAVPAAAVSSXXENPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATSSSFWQECGGGQKW 963
            +SQD ARRELAAEIRENEVQPQK RADAAERDLSELRQAAHGWLSAAHALKLEAVAEARENGFAEGRGDLLEQLERSHRERLALREEVLVARTEAVDAIAAMGEAGAAALVKSRDVWRAEGRAAAEQ L AGEDVAAEVR+AFA YVVSAHEQRL AVARERERAGEAAREL  X   ANEML ALSKERSIETEV  DP LN+VAAVPAAAVSS  ENP               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATSSSFWQECGGGQKW
Sbjct:  187 SSQDDARRELAAEIRENEVQPQKLRADAAERDLSELRQAAHGWLSAAHALKLEAVAEARENGFAEGRGDLLEQLERSHRERLALREEVLVARTEAVDAIAAMGEAGAAALVKSRDVWRAEGRAAAEQELLAGEDVAAEVREAFATYVVSAHEQRLAAVARERERAGEAARELXXXXXXANEMLTALSKERSIETEVRHDPTLNKVAAVPAAAVSSVPENPATTAAFRPSFSTSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATSSSFWQECGGGQKW 468
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BLAST of mRNA_Ecto-sp13_S_contig14613.3544.1 vs. uniprot
Match: D7G6L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L4_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 2.750e-104
Identity = 216/291 (74.23%), Postives = 221/291 (75.95%), Query Frame = 1 
Query:   91 RASPVFLLNNSQDYARRELAAEIRENEVQPQKFRADAAERDLSELRQAAHGWLSAAHALKLEAVAEARENGFAEGRGDLLEQLERSHRERLALREEVLVARTEAVDAIAAMGEAGAAALVKSRDVWRAEGRAAAEQGLPAGEDVAAEVRDAFAAYVVSAHEQRLVAVARERERAGEAARELSRXLARANEMLAALSKERSIETEVMQDPILNEVAAVPAAAVSSXXENPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATSSSFWQECGGGQKW 963
            RASPV LL+NSQD ARRELAAEIRENEVQPQK RADAAERDLSELRQAAHGWLSAAHALKLEAVAEARE+GFAEGRGDLL +LERSHRERLAL EEVLVARTEAVDAIAAMGEAGAAALVKSRDVWRAEGRAAAEQ L AGEDVA+EVR+AFAAYVVSAHEQRL AVARERERAGEAARELSR LARANEMLAALSK                                                            XXXXXXXXXXXXXXXX LATSSSFWQECGGGQKW
Sbjct:   32 RASPVLLLDNSQDDARRELAAEIRENEVQPQKLRADAAERDLSELRQAAHGWLSAAHALKLEAVAEARESGFAEGRGDLLGKLERSHRERLALSEEVLVARTEAVDAIAAMGEAGAAALVKSRDVWRAEGRAAAEQELLAGEDVASEVREAFAAYVVSAHEQRLAAVARERERAGEAARELSRELARANEMLAALSK----------------------------------------------------------GGXXXXXXXXXXXXXXXXKLATSSSFWQECGGGQKW 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14613.3544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K265_9PHAE2.430e-11887.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6L4_ECTSI2.750e-10474.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14613contigEcto-sp13_S_contig14613:3128..4289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size968
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009880.1
Cds size966
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.7884457-CDS-Ecto-sp13_S_contig14613:3127..34121681462780.7884457-CDS-Ecto-sp13_S_contig14613:3127..3412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14613 3128..3412 -
1681462780.798771-CDS-Ecto-sp13_S_contig14613:3608..42891681462780.798771-CDS-Ecto-sp13_S_contig14613:3608..4289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14613 3609..4289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14613.3544.1prot_Ecto-sp13_S_contig14613.3544.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14613 3128..4289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14613.3544.1

>prot_Ecto-sp13_S_contig14613.3544.1 ID=prot_Ecto-sp13_S_contig14613.3544.1|Name=mRNA_Ecto-sp13_S_contig14613.3544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=322bp
VSRQHSFDPPTINNSATLRDRPLSTRHPEPRASPVFLLNNSQDYARRELA
AEIRENEVQPQKFRADAAERDLSELRQAAHGWLSAAHALKLEAVAEAREN
GFAEGRGDLLEQLERSHRERLALREEVLVARTEAVDAIAAMGEAGAAALV
KSRDVWRAEGRAAAEQGLPAGEDVAAEVRDAFAAYVVSAHEQRLVAVARE
RERAGEAARELSRELARANEMLAALSKERSIETEVMQDPILNEVAAVPAA
AVSSAAENPSTTAAIRPSFSSSAPTTAAISQPIEGGAAAAAAAATAVAAA
AAVKLATSSSFWQECGGGQKW*
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mRNA from alignment at Ecto-sp13_S_contig14613:3128..4289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14613.3544.1 ID=mRNA_Ecto-sp13_S_contig14613.3544.1|Name=mRNA_Ecto-sp13_S_contig14613.3544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14613:3128..4289- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCTAGACAGCACTCGTTCGACCCACCTACGATAAACAACTCCGCAAC
GCTTCGAGACAGACCGCTTTCGACCCGCCACCCTGAACCGCGTGCTTCCC
CCGTTTTTCTTCTGAACAACAGCCAGGACTACGCCCGCAGAGAGCTCGCG
GCAGAGATCCGTGAGAACGAGGTCCAGCCGCAGAAGTTTCGCGCAGACGC
CGCAGAGAGAGATCTCTCCGAGCTCCGGCAAGCTGCCCACGGCTGGCTTT
CCGCCGCCCACGCCTTGAAGCTGGAGGCTGTAGCGGAGGCTCGGGAGAAC
GGCTTCGCGGAAGGGCGCGGGGATTTGCTGGAGCAGTTGGAGCGCTCTCA
CCGGGAGCGCCTAGCGCTGAGGGAGGAGGTGCTGGTGGCGCGGACAGAGG
CGGTCGATGCGATAGCGGCGATGGGGGAGGCTGGGGCAGCGGCGTTGGTG
AAGTCTCGCGACGTTTGGAGGGCGGAGGGGCGCGCGGCGGCGGAGCAAGG
GCTACCAGCGGGGGAAGATGTGGCGGCGGAGGTTCGGGACGCGTTTGCGG
CGTATGTTGTGAGCGCGCACGAGCAGAGGCTTGTCGCGGTGGCGCGGGAG
AGGGAGCGGGCGGGGGAGGCGGCCCGAGAGCTTTCGAGGGAGCTCGCAAG
GGCGAACGAAATGCTGGCTGCGTTGTCGAAGGTGAGCCATCAACTAGGCC
ACAACCCAGTATATCGTGAGTAACTTGCGGTCACTTGCAAGAATGTCCGC
GCGCGACAAGCATCGCAAGATTTTTTCTACTTCCCAATAAAAAGTAACGC
CCCCCCACCCTAGGTCCAGTTCTGCCAATTCAAGCACGGCTTATTCGTGT
AAAACCCACGTTTGTCTATTTGCGCAGGAGCGTTCGATTGAGACGGAGGT
CATGCAAGACCCAATTCTCAATGAGGTGGCTGCCGTGCCGGCAGCAGCAG
TTTCATCGGCGGCTGAGAACCCCTCTACTACCGCTGCGATCCGACCGTCA
TTTTCTTCCTCCGCTCCTACAACCGCCGCGATTTCCCAACCCATCGAGGG
CGGGGCGGCAGCGGCGGCGGCAGCGGCGACGGCGGTTGCGGCGGCGGCGG
CGGTGAAGCTGGCGACGAGCTCGTCGTTCTGGCAGGAGTGCGGCGGGGGA
CAGAAGTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14613:3128..4289-

>mRNA_Ecto-sp13_S_contig14613.3544.1 ID=mRNA_Ecto-sp13_S_contig14613.3544.1|Name=mRNA_Ecto-sp13_S_contig14613.3544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14613:3128..4289- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCTAGACAGCACTCGTTCGACCCACCTACGATAAACAACTCCGCAAC
GCTTCGAGACAGACCGCTTTCGACCCGCCACCCTGAACCGCGTGCTTCCC
CCGTTTTTCTTCTGAACAACAGCCAGGACTACGCCCGCAGAGAGCTCGCG
GCAGAGATCCGTGAGAACGAGGTCCAGCCGCAGAAGTTTCGCGCAGACGC
CGCAGAGAGAGATCTCTCCGAGCTCCGGCAAGCTGCCCACGGCTGGCTTT
CCGCCGCCCACGCCTTGAAGCTGGAGGCTGTAGCGGAGGCTCGGGAGAAC
GGCTTCGCGGAAGGGCGCGGGGATTTGCTGGAGCAGTTGGAGCGCTCTCA
CCGGGAGCGCCTAGCGCTGAGGGAGGAGGTGCTGGTGGCGCGGACAGAGG
CGGTCGATGCGATAGCGGCGATGGGGGAGGCTGGGGCAGCGGCGTTGGTG
AAGTCTCGCGACGTTTGGAGGGCGGAGGGGCGCGCGGCGGCGGAGCAAGG
GCTACCAGCGGGGGAAGATGTGGCGGCGGAGGTTCGGGACGCGTTTGCGG
CGTATGTTGTGAGCGCGCACGAGCAGAGGCTTGTCGCGGTGGCGCGGGAG
AGGGAGCGGGCGGGGGAGGCGGCCCGAGAGCTTTCGAGGGAGCTCGCAAG
GGCGAACGAAATGCTGGCTGCGTTGTCGAAGGAGCGTTCGATTGAGACGG
AGGTCATGCAAGACCCAATTCTCAATGAGGTGGCTGCCGTGCCGGCAGCA
GCAGTTTCATCGGCGGCTGAGAACCCCTCTACTACCGCTGCGATCCGACC
GTCATTTTCTTCCTCCGCTCCTACAACCGCCGCGATTTCCCAACCCATCG
AGGGCGGGGCGGCAGCGGCGGCGGCAGCGGCGACGGCGGTTGCGGCGGCG
GCGGCGGTGAAGCTGGCGACGAGCTCGTCGTTCTGGCAGGAGTGCGGCGG
GGGACAGAAGTGGTGA
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