mRNA_Ecto-sp13_S_contig14608.3538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14608.3538.1
Unique NamemRNA_Ecto-sp13_S_contig14608.3538.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14608.3538.1 vs. uniprot
Match: D8LDK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK9_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 8.420e-107
Identity = 155/166 (93.37%), Postives = 161/166 (96.99%), Query Frame = 1 
Query:  760 QAVTYALKEEDKHRCVHGHAWVTPDKGGDRHDEESCNSLKASGKHNSILEEYYDRMAESAIKRLGDALWVGVTERSDEADCLLFLTLGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDLRIWTARERLKHAGQEELERLGKHCVDVING 1257
            +AVTYA  EEDKHRCV+GHAWV P+KGGD HDEESCNSLKASGKHN+ILEEYYDRMAESAIKRLGD LWVGVTERSDEADCLLFLTLGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDLRIWTARERLKHAG+EELERLGKHCV+VING
Sbjct:  121 EAVTYAHNEEDKHRCVYGHAWVKPEKGGDHHDEESCNSLKASGKHNAILEEYYDRMAESAIKRLGDGLWVGVTERSDEADCLLFLTLGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDLRIWTARERLKHAGEEELERLGKHCVNVING 286
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14608.3538.1 vs. uniprot
Match: A0A6H5KCA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCA8_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.830e-43
Identity = 82/158 (51.90%), Postives = 106/158 (67.09%), Query Frame = 1 
Query:  802 CVHGHAWVTPDKGGDRHDEE------SCNSLKASGKHNSILEEYYDRMAESAIKRLGDALWVGVTERSDEADCLLFLTLGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDLRIWTARERLKHAGQEELERLGKHCVDVING 1257
               GH  + PD   +R   +      +C ++KASG+   +   Y++R A++AI+R+  ALWVGVTER +E+ CLLFLTLGK  + M  +R K PRPI+VWHE A  K   YD+ADW+VF AAND LDLR+WTARERLK AG+EE  RLG HC  V+ G
Sbjct:  268 AAEGHPCIRPDPEFNRWRVDDTDVGGTCKAIKASGQDADVWAAYFERTADAAIRRMEGALWVGVTERMEESLCLLFLTLGKKESEMPQHRLKTPRPITVWHEKAKEKAASYDRADWRVFEAANDFLDLRLWTARERLKSAGEEERARLGDHCFQVLAG 425
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14608.3538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDK9_ECTSI8.420e-10793.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCA8_9PHAE2.830e-4351.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14608contigEcto-sp13_S_contig14608:914..4265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score333.2
Seed ortholog evalue7.7e-89
Seed eggNOG ortholog2880.D8LDK9
Model size1769
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2F011@1,2T197@2759
Cds size546
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14608.3538.1prot_Ecto-sp13_S_contig14608.3538.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14608 1631..3759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.3407278-UTR-Ecto-sp13_S_contig14608:913..16301681462780.3407278-UTR-Ecto-sp13_S_contig14608:913..1630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14608 914..1630 +
1681462780.3986363-UTR-Ecto-sp13_S_contig14608:3759..42651681462780.3986363-UTR-Ecto-sp13_S_contig14608:3759..4265Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14608 3760..4265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.352357-CDS-Ecto-sp13_S_contig14608:1630..18221681462780.352357-CDS-Ecto-sp13_S_contig14608:1630..1822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14608 1631..1822 +
1681462780.3650692-CDS-Ecto-sp13_S_contig14608:2104..22721681462780.3650692-CDS-Ecto-sp13_S_contig14608:2104..2272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14608 2105..2272 +
1681462780.373141-CDS-Ecto-sp13_S_contig14608:2747..28491681462780.373141-CDS-Ecto-sp13_S_contig14608:2747..2849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14608 2748..2849 +
1681462780.3834326-CDS-Ecto-sp13_S_contig14608:3675..37591681462780.3834326-CDS-Ecto-sp13_S_contig14608:3675..3759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14608 3676..3759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14608.3538.1

>prot_Ecto-sp13_S_contig14608.3538.1 ID=prot_Ecto-sp13_S_contig14608.3538.1|Name=mRNA_Ecto-sp13_S_contig14608.3538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MTLAGGPFEMGMSVQAVTYALKEEDKHRCVHGHAWVTPDKGGDRHDEESC
NSLKASGKHNSILEEYYDRMAESAIKRLGDALWVGVTERSDEADCLLFLT
LGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDL
RIWTARERLKHAGQEELERLGKHCVDVINGL*
back to top

mRNA from alignment at Ecto-sp13_S_contig14608:914..4265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14608.3538.1 ID=mRNA_Ecto-sp13_S_contig14608.3538.1|Name=mRNA_Ecto-sp13_S_contig14608.3538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3352bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14608:914..4265+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTACCTTAGTGCTTTCGTCAGGGTCTCTGTGTCCTGTTGGATGTGCTTG
CATGCCCTGGTTGTCGTCTTGCATCTTGAGTGGCAACCGTGAGAATAGTT
AGATAGGCCCCGTCAACATAGGAGCCTCTTTTTTTGGAAATCCCCTCTAA
AAGTATGTTCAGATACTTTTGTGACTAGATGTGTATAACGCGTCTTGTTT
GTACTTGGCACGGCCTGTATCACTTGACGGAAATAGCCTTTTTGTTGCGG
CGCTTTGTCTGTCGGTTGGATGTTCTACAAACGGTGGTAGCCTTCGCTGC
ATCGCGTAGTGTAGAGGGTTGTTTTCATCCTTTTGACGCTAGACTTTGCG
CACGGATTCGCGTTCACGACGTCGAACAGAAATGTGCTCCAAAACCTCGC
TGTACGTTGAACCTCTCGAATGGTACAACAATGCGTGTTGCTCAGCATGT
GCTATCTCTTCACCTTGTATTCGGCTGTTGGTACATCTCGAACGGGTAGT
CTTTCTGTGCTTGAGGTCACTTTTCCTAGTATGTACCTTGGCTATCGGCG
ACACGACGCTATTGTGGTGGATGTTGTGGGTAGCTGACTGCACAACGCCT
TACATCCATTGCGTTCGGATTCTATGGTGCAGTGTTTGCCCTGACGGCCA
TCCACGCATGGCGACGACTTGCCCAAAAAGCGGCACAGACAAGTGAAGAG
GAATCTATGAGATTGCCATGACGCTCGCGGGTGGACCTTTCGAAATGGGC
ATGTCTGTACAGGCGGTGACGTACGCGCTCAAGGAAGAGGACAAACATCG
GTGCGTCCACGGCCATGCGTGGGTGACGCCAGACAAAGGGGGCGATCGCC
ATGACGAGGAAAGCTGCAACTCGTTGAAGGCCAGCGGGAAACATAACTCA
ATACTGGAGGTGGGGGCCGTCCCATTTTGTCGTCATCGCCGCTGTCATCG
GCGTTCTTGTTGCGGTTGTTGCTCTCGCCGTTTTCGATGTTGCCGTGTTT
CGTGTTGATGTCGGTGGAATCTTCGTCTCCCGCCCTTAGCTTCAGCCCCT
GCCGTGTATGGTACTGAACGGGATATTGGAAGGTATTGTACTGTTCACGC
TGGTGAAATTTGTACGAGTGCACGCATGCCGATGTTGGTGTTCGGCGAGC
GCGCCATCGTTGACATCCTTCGGCCGCTATCACCGATGCAGGAGTACTAC
GACCGCATGGCGGAATCTGCAATCAAGAGACTGGGGGATGCTTTGTGGGT
AGGTGTGACGGAGAGGTCGGATGAGGCGGATTGCCTTCTGTTCCTGACTC
TTGGGAAGGGTTCGACAGGCATGGGCTCGTACCGCCACAAAGAGCCCAGG
CCCATCTCGGTGAGACAGGTTTGAGTTAGGGTGAGGTTTAGGAGACAAAG
CCATATCCTTGTTGACATCTGAAGCTGTTACTGGGTGTTCCGGAGATTCA
TGGCAGCCGATTCACGGAAATAACGTGTTGATTGAAATGCGAACGTTAAC
CGCGACCAATCACAACGAAGATTGACGTAAAGCGCGCGAGATTGAAATGA
ACAATCGGTCAGCAAGCATTTCCGCGCTGTCGACCTTCATTTCGAGCAAT
TGCTCTATCCTTCTCCCCCTGTCGAACCCCCGGCAGCCTGGCAATCGAAC
GATCCACTAGGTCTTGTGAATTCTGAATCTTGTTGGCAAGTCATCATTTG
TTCTGTTCGCCCGGGGGGACCCGATCGCGACAAGACGTGCAAACTCATGA
CCAGCGTTTTGAAAATAATGCAACAGCAACGCCAAGCCTGTTTCGACCAA
ATCGCTATCCACACTCAGCGTCCGTTGGCGACAGGTGTGGCACGAGGCTG
CAATGTCAAAAGTTACACAGTACGACCAAGCTGACTGGAAGGTTTTCAAC
GCAGCGAACGACATTCTCGACCTCCGCATTTGGACGGTGAGGTGGCCTAC
TGAAGGTGGAAAACGTGTACTCTATGGACGCTGTTGTTGTCCGTAGTCAA
GGCCTTCGTTGTGTGAGGTTGATGGTTTCAACTACACTTTTCTCAGCTGT
TCTCCCAGTTCTCCTTGTCCTAAACTCATGTCGTGTATAAAGACGTGCCC
ACGCTACTTCAACCTAGGCCCACCGCTGATGTGGTGCATATATCTTCGTC
TTCCTCTCCCCTGCCTTTCCGATGGTTTGTAGGACAGACGGTTACCCCCG
ATGTTGTACAAAGACTTTCGTCAGACGATTCGGTCGTCTGATTTTATGTT
CATTGCTCATCATCAGCTTGCCTTCAGTGCGGTTGTCCCGCCCATTTTCG
CGATTGACCGAATGTTCCGGGGAGCAGGGGGTGTTTTCAAGTGTATCCCC
TAATTCCCCTGATCATGGAAAGAATGTGATTCTGCGGGGCTCGCTCGAGT
ACAGCCTCCGCTCGTCTGTTAAAAGACAAAGAGTCACCATCACATCTGGC
AAGCTGGTGTGTTCGCCCAATCGTGGACGTATGTATGCATAGGCATAACA
CTACGGAGGCACACAGCAGTTATACAAAGTAAGGATTGCGTGAAAAAATA
CTATACACCTTATCTATGGGTTACGTCATTCTTTTGTTGGGGTGCCCCCT
CAAACGTTATAGCGTTGGCGGGACCCGGGACAACAGCTATTTCCTTAGAG
CACGGTTGCCTTTCAAAATGACAATTCTTTGTACACAACAACTGCCGTGC
ATGCTGATGTACTCCCGACTTCACATCTTCACCCGATCCCGTCGCGGTCC
GTTCGACTCCAGGCGCGGGAACGTCTGAAGCACGCGGGCCAAGAAGAGCT
TGAAAGGCTGGGAAAGCACTGCGTGGATGTCATTAACGGGCTGTGAATGG
GAGAGACGTCACCAGTAGAGTTAACTCCCGATGGGTTTCGCCTTATCCCC
AGCGGCTGTACAGCGGTAGAGGTCATCACATTGGTGCGTCGACGTACTCG
CACAGCGTGGTCGGTCGTATGAAATGTGCGGATTTTCCGCACTTTGGGGG
ACTGTCGTATTGTACGTCATGCTTTGCATGGCGAATAGTGCGATGCTATC
GTCCCCCGTTGAGAATACACCCTCCAGCAGCTCGACTTCCGACGAACAGA
TATTTCATTTTGATCTGGGGCGACAATTTTAAGATTTGTTGTTTTTGTTC
GCCACCCAACATTTTGACGTCGCCCCGAGGCTACAGTGTAGGCAACCCCC
GCGGTGTCCTAGGGCAAGTCGATTCGTTGATTCGGACACCATGGCCGTTG
TTGTTGTCTGGATGTATTTATCGTCAGTGTGTCGTTGTTGTTGTTGTGGC
CGTCGTCGGGTGTTGCTGTTGCTCTCAAGCCAAATGGTACTTTTTAGGTA
GC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14608:914..4265+

>mRNA_Ecto-sp13_S_contig14608.3538.1 ID=mRNA_Ecto-sp13_S_contig14608.3538.1|Name=mRNA_Ecto-sp13_S_contig14608.3538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14608:914..4265+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCTCGCGGGTGGACCTTTCGAAATGGGCATGTCTGTACAGGCGGT
GACGTACGCGCTCAAGGAAGAGGACAAACATCGGTGCGTCCACGGCCATG
CGTGGGTGACGCCAGACAAAGGGGGCGATCGCCATGACGAGGAAAGCTGC
AACTCGTTGAAGGCCAGCGGGAAACATAACTCAATACTGGAGGAGTACTA
CGACCGCATGGCGGAATCTGCAATCAAGAGACTGGGGGATGCTTTGTGGG
TAGGTGTGACGGAGAGGTCGGATGAGGCGGATTGCCTTCTGTTCCTGACT
CTTGGGAAGGGTTCGACAGGCATGGGCTCGTACCGCCACAAAGAGCCCAG
GCCCATCTCGGTGTGGCACGAGGCTGCAATGTCAAAAGTTACACAGTACG
ACCAAGCTGACTGGAAGGTTTTCAACGCAGCGAACGACATTCTCGACCTC
CGCATTTGGACGGCGCGGGAACGTCTGAAGCACGCGGGCCAAGAAGAGCT
TGAAAGGCTGGGAAAGCACTGCGTGGATGTCATTAACGGGCTGTGA
back to top