prot_Ecto-sp13_S_contig14606.3536.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14606.3536.1
Unique Nameprot_Ecto-sp13_S_contig14606.3536.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length375
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: D8LEY7_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY7_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 8.800e-159
Identity = 288/335 (85.97%), Postives = 304/335 (90.75%), Query Frame = 0 
Query:   40 IKARAPPCRYYARGLCTKGRACPFFHAPSALQAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKREPGGTERPRKTVVNSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHVRGVARTQPSDKKMCTETSGQRQPRPPTGRHSGHSSTALASPPEAAEASSKGRTIPADSNGKNTGTKSGKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETPSTTARAATKAVGKLQNTGRAEGATSTSCEPADEQHXXXXXXXXXXXPVNAGSDAPSPLPKSCATTAVVVANEKEELLPSRSGSA 374
            IKARAPPCR+YARGLCTKG+ACPFFHAPSA QAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXX       GGTERPRKTVV + GGGLGVSVEAD AAKRRAAEILQKHRLTSSTPAKEAGSRGGMHV+G  RTQPSDKK+CT+TSGQRQPRPPTGRHSGHSSTALASPPEAAEA SKGRTIPAD+NGKNTG K+GKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETP TTARAATKA+G LQNTGRAEGAT TS +PADEQ XXXX        V+AG+DAP+ +P SCATTA VVAN+KEE+LPSRSGSA
Sbjct:   63 IKARAPPCRFYARGLCTKGKACPFFHAPSAQQAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTERPRKTVVKNSGGGLGVSVEADPAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHVKGATRTQPSDKKICTDTSGQRQPRPPTGRHSGHSSTALASPPEAAEALSKGRTIPADNNGKNTGAKTGKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETPPTTARAATKALGTLQNTGRAEGATPTSRKPADEQXXXXXH-------VSAGNDAPA-VPTSCATTAAVVANDKEEILPSRSGSA 389
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BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5L3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE)

HSP 1 Score: 401 bits (1031), Expect = 3.550e-135
Identity = 248/268 (92.54%), Postives = 253/268 (94.40%), Query Frame = 0 
Query:   40 IKARAPPCRYYARGLCTKGRACPFFHAPSALQAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKREPGGTERPRKTVVNSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHVRGVARTQPSDKKMCTETSGQRQPRPPTGRHSGHSSTALASPPEAAEASSKGRTIPADSNGKNTGTKSGKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETPSTTARAATKAVGKLQNT 307
            IKARAPPCR+YARGLCTKGRACPFFHAPSA Q PAERTAPESS  PAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXX AAGKREPG TERPRK V+NSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMH+RG ARTQPSDKK C ETSGQRQPRPPTGRHSGHSSTALASP EAAEASSKGRTIPAD+NGKNTG K+GKRVGEQEEAAGAEEAPACEGAVL APSPKKQA EE PSTTARAATKAVGKLQNT
Sbjct:  159 IKARAPPCRFYARGLCTKGRACPFFHAPSAQQVPAERTAPESSWGPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGKREPGVTERPRKMVLNSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHIRGAARTQPSDKKSCAETSGQRQPRPPTGRHSGHSSTALASPLEAAEASSKGRTIPADNNGKNTGAKTGKRVGEQEEAAGAEEAPACEGAVLLAPSPKKQATEEIPSTTARAATKAVGKLQNT 426
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEY7_ECTSI8.800e-15985.97C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L3Y8_9PHAE3.550e-13592.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 41..67
e-value: 0.0034
score: 26.6
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 41..68
score: 14.202
NoneNo IPR availableGENE3D4.10.1000.10coord: 38..107
e-value: 4.0E-6
score: 28.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..374
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 43..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14606contigEcto-sp13_S_contig14606:1282..2736 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14606.3536.1mRNA_Ecto-sp13_S_contig14606.3536.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14606 1282..4022 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14606.3536.1 ID=prot_Ecto-sp13_S_contig14606.3536.1|Name=mRNA_Ecto-sp13_S_contig14606.3536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=375bp
AAVGPAPSSQQPPENSRPRAAAAAAAAAAAAAAEAAAAAIKARAPPCRYY
ARGLCTKGRACPFFHAPSALQAPAERTAPESSRRPAPTTLRGAAAAARKA
AAASGARAASGEKWRQQKGGAAGKREPGGTERPRKTVVNSGGGGLGVSVE
ADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHVRGVARTQPSDKKMCT
ETSGQRQPRPPTGRHSGHSSTALASPPEAAEASSKGRTIPADSNGKNTGT
KSGKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETPSTTARAATKA
VGKLQNTGRAEGATSTSCEPADEQHQHQHQHQGQQLPVNAGSDAPSPLPK
SCATTAVVVANEKEELLPSRSGSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf