mRNA_Ecto-sp13_S_contig14606.3536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: D8LEY7_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY7_ECTSI) HSP 1 Score: 460 bits (1184), Expect = 1.090e-152 Identity = 288/335 (85.97%), Postives = 304/335 (90.75%), Query Frame = 1
Query: 118 IKARAPPCRYYARGLCTKGRACPFFHAPSALQAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKREPGGTERPRKTVVNSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHVRGVARTQPSDKKMCTETSGQRQPRPPTGRHSGHSSTALASPPEAAEASSKGRTIPADSNGKNTGTKSGKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETPSTTARAATKAVGKLQNTGRAEGATSTSCEPADEQHXXXXXXXXXXXPVNAGSDAPSPLPKSCATTAVVVANEKEELLPSRSGSA 1122
IKARAPPCR+YARGLCTKG+ACPFFHAPSA QAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXX GGTERPRKTVV + GGGLGVSVEAD AAKRRAAEILQKHRLTSSTPAKEAGSRGGMHV+G RTQPSDKK+CT+TSGQRQPRPPTGRHSGHSSTALASPPEAAEA SKGRTIPAD+NGKNTG K+GKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETP TTARAATKA+G LQNTGRAEGAT TS +PADEQ XXXX V+AG+DAP+ +P SCATTA VVAN+KEE+LPSRSGSA
Sbjct: 63 IKARAPPCRFYARGLCTKGKACPFFHAPSAQQAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTERPRKTVVKNSGGGLGVSVEADPAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHVKGATRTQPSDKKICTDTSGQRQPRPPTGRHSGHSSTALASPPEAAEALSKGRTIPADNNGKNTGAKTGKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETPPTTARAATKALGTLQNTGRAEGATPTSRKPADEQXXXXXH-------VSAGNDAPA-VPTSCATTAAVVANDKEEILPSRSGSA 389
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5L3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE) HSP 1 Score: 401 bits (1031), Expect = 3.090e-129 Identity = 248/268 (92.54%), Postives = 253/268 (94.40%), Query Frame = 1
Query: 118 IKARAPPCRYYARGLCTKGRACPFFHAPSALQAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKREPGGTERPRKTVVNSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHVRGVARTQPSDKKMCTETSGQRQPRPPTGRHSGHSSTALASPPEAAEASSKGRTIPADSNGKNTGTKSGKRVGEQEEAAGAEEAPACEGAVLHAPSPKKQAIEETPSTTARAATKAVGKLQNT 921
IKARAPPCR+YARGLCTKGRACPFFHAPSA Q PAERTAPESS PAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXX AAGKREPG TERPRK V+NSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMH+RG ARTQPSDKK C ETSGQRQPRPPTGRHSGHSSTALASP EAAEASSKGRTIPAD+NGKNTG K+GKRVGEQEEAAGAEEAPACEGAVL APSPKKQA EE PSTTARAATKAVGKLQNT
Sbjct: 159 IKARAPPCRFYARGLCTKGRACPFFHAPSAQQVPAERTAPESSWGPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGKREPGVTERPRKMVLNSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHIRGAARTQPSDKKSCAETSGQRQPRPPTGRHSGHSSTALASPLEAAEASSKGRTIPADNNGKNTGAKTGKRVGEQEEAAGAEEAPACEGAVLLAPSPKKQATEEIPSTTARAATKAVGKLQNT 426
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE) HSP 1 Score: 100 bits (249), Expect = 3.030e-18 Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = -1
Query: 2097 CRATLPVVTQKSLALPSPPAVFCL*FSMREECSTLFPLCTHELALSTRARAEAREKFILQEKLAYTG 2297
CR PVVTQKS +LPSPPAV CL F MRE+ ST FPLCTHELALSTR AEAREK LQEKLAY G
Sbjct: 122 CRLLQPVVTQKSPSLPSPPAVLCLRFLMREQFSTFFPLCTHELALSTRPGAEAREKLTLQEKLAYAG 188
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5KKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL9_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 5.320e-13 Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1
Query: 2125 MNFSLASALALVDRASSCVHKGNRVLHSSRIENQRQNTAGGDGRARLFCVTT 2280
M+FSLASA LVD ASSCVH+G RVL+SSR++N+RQ TAGG+GR LFCVTT
Sbjct: 1 MSFSLASAPGLVDSASSCVHRGKRVLNSSRLKNRRQGTAGGEGREGLFCVTT 52
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5JLU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU5_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 3.700e-12 Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = -1
Query: 2097 CRATLPVVTQKSLALPSPPAVFCL*--FSMREECSTLFPLCTHELALSTRARAEAREKFILQEKLAYTG 2297
CR PVVTQKS LPS F + F+++E STLFPLCTHELALSTR AEAREK +QEKLAY G
Sbjct: 13 CRLLQPVVTQKSPPLPSLLRYFVVVVVFTLKE-FSTLFPLCTHELALSTRPGAEAREKLNVQEKLAYAG 80
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5L041_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L041_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.020e-11 Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = -1
Query: 2097 RATLPVV-TQKSLALPSPPAVFCL*FSMREECSTLFPLCTHELALSTRARAEAREKFILQEKLAYTG 2294
RA +P T+ S +LPSPPA+ CL F +R E STLF LCTH LALSTR AEAREK LQEKLAY G
Sbjct: 813 RALVPFTPTRVSPSLPSPPAILCLRFLLRGEFSTLFTLCTHGLALSTRPGAEAREKLTLQEKLAYAG 879
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5L3Y5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y5_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 4.190e-10 Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = -1
Query: 2097 MREECSTLFPLCTHELALSTRARAEAREKFILQEKLAYTG 2216
MREE STLFPLCTHELALSTR EAREK LQEKLAY G
Sbjct: 1 MREEFSTLFPLCTHELALSTRPGGEAREKLTLQEKLAYAG 40
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5K2Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z5_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 4.860e-10 Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = -1
Query: 2097 MREECSTLFPLCTHELALSTRARAEAREKFILQEKLAYTG 2216
MREE STLFPLCTHELALSTR AEAREK LQE LAY G
Sbjct: 1 MREEFSTLFPLCTHELALSTRPGAEAREKLTLQETLAYAG 40
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5JSR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR5_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 6.320e-10 Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = -1
Query: 2097 MREECSTLFPLCTHELALSTRARAEAREKFILQEKLAYTG 2216
MREE STLFPLCTHELALSTR AEAR K LQEKLAY G
Sbjct: 1 MREEFSTLFPLCTHELALSTRPGAEARGKLTLQEKLAYAG 40
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Match: A0A6H5JMV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV9_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.180e-9 Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = -1
Query: 2097 MREECSTLFPLCTHELALSTRARAEAREKFILQEKLAYTG 2216
MREE STLFPLCTHELALSTR EAREK LQEKLAY G
Sbjct: 1 MREEFSTLFPLCTHELALSTRPGTEAREKLTLQEKLAYAG 40 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14606.3536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14606.3536.1 >prot_Ecto-sp13_S_contig14606.3536.1 ID=prot_Ecto-sp13_S_contig14606.3536.1|Name=mRNA_Ecto-sp13_S_contig14606.3536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=375bp AAVGPAPSSQQPPENSRPRAAAAAAAAAAAAAAEAAAAAIKARAPPCRYYback to top mRNA from alignment at Ecto-sp13_S_contig14606:1282..4022+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14606.3536.1 ID=mRNA_Ecto-sp13_S_contig14606.3536.1|Name=mRNA_Ecto-sp13_S_contig14606.3536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14606:1282..4022+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14606:1282..4022+ >mRNA_Ecto-sp13_S_contig14606.3536.1 ID=mRNA_Ecto-sp13_S_contig14606.3536.1|Name=mRNA_Ecto-sp13_S_contig14606.3536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1125bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14606:1282..4022+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |