prot_Ecto-sp13_S_contig146.3530.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig146.3530.1
Unique Name	prot_Ecto-sp13_S_contig146.3530.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	986

Homology

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BLAST of mRNA_Ecto-sp13_S_contig146.3530.1 vs. uniprot
Match: D8LLH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH6_ECTSI)

HSP 1 Score: 1053 bits (2722), Expect = 0.000e+0
Identity = 660/987 (66.87%), Postives = 680/987 (68.90%), Query Frame = 0

Query:    1 MSRLSYSETRDGIVPGVSEEGVETKGPSTSGGKRKRARDDDIDGVAEAEANGGSGGAASPGAESLSSYSLMGVVDGNEGKDVAGGACTVEAEAXXXXXXXXXXXXXXXXXXXXXXA-DDGDDEVVEIPPPSAAPAVMEVSGEADCDSGGFKSGSPGTAAAPISIESGEAPKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSGEQRPSKKARKSAGAKAKDSDVSEGGSDXXXXXXXXXXESKGIGNDGDXXXXXXXXGSEGPVLLTVGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTALDKNDNTGTQXXXXXXXXXXXXHSQAGDENGXXXXXXXXXXEGPSDDEKNDAAEKXXXXXXXAKTEGPGSPTKKNSLSGGRKKHGVFVVNLLYTLCDEEKLESLFSTFGRVTAVVLTRPPEGKRVAGSASVYFGTSEEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPEQAAKATNKAKPLEATRCTLCGAIGHDDKNCPFYACSRCWEEGHLADACPYVDVMEEGPEPYXXXXXXXXXXXXXXXXXCTGKSQLKFSCITCRDDGHTQCGKETILVFGNERGDAMTCCNCGLERHDRRSCPHQTEAEVLRECGYRFNSSAXXXXXXXXXXXXXKTYMMCYNCGKQGHSKSECPVPRQTQTPGRFGTSNNYNRNDQPRVPAADWKQEWSASNNNTLSFNSLSQNHGSGKFRNDPTGSGQQHHHQAQQPTHLPSAYLNDLAQPPSPLQPTRRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGGTHNRYQHQMATPTDSRSSFPRWGDDAAVSNGGSGSGTLHRAYHPGGNFGSDSSGGGGRRV-EDRHRSSGHRGERYSSSRSGSDRYSGGGSSRGQKGGYHSYNRDQHQPAPTXXXXYSHHSSGSHQRSRYSSGQPYSSGGQSHSAGRRGGGTRDSHANPRSYGY 985
            MSRLSYSETRDGIV GVSEEGVETKGPS SGGKRKRARDDDIDGVAEAEANGGSGGAASPGA+SLSSYSLMGV DGN+GKD AGG   VE EA                      A D      VEIPPPSAAPAVME+S EADCDSGGF SG PGTAAAPISIESGEAP+K                               VGSGEQRPSKKARKSAGA             XXXXXXXXXX          XXXXX   G EGPVL  VGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTA DK +NT TQ     XXXXXX  SQAGDENG  X       EGPS  EKN  AEK       AKTEG GSPTKKNSL GGRKKHGVFVVNLLYTLCDEEKLESLFS FGRVTAVVLTRPPEG++V+G ASVYF T+EEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPEQAAKATNKAKPLE TRCTLCGAIGHDD            EEGHLADACPYVDVMEEGPEPY                 C GKSQLKFSCITCRDDGHTQCGKETILVFGNERG AMTCCNCGLERHD RSCPHQTEAE+LRECGYRFNSSAXXXXXXXXXXXXXKTYM+CYNCGKQGH KSECPVPRQTQTPGRFGT +N                                             G G   +HQ QQ                                                          ERGGTHNRY+HQMA+PTDSRSSFPRWGD+ AVSNGGS SGTLHRAYHPGGNFGSDS         EDRHRSSGHRGER               SSRGQKGGYHSY+RDQHQPA  XXXXYSHHSSGSHQ SRYSSGQPYSSGGQS+SAGRRGGGTRD+HA+PRSYGY
Sbjct:    1 MSRLSYSETRDGIVLGVSEEGVETKGPSNSGGKRKRARDDDIDGVAEAEANGGSGGAASPGADSLSSYSLMGVADGNDGKDAAGGVSKVEVEAAAADGAPSSSADGNAGSGADAPAADXXXXXXVEIPPPSAAPAVMELSEEADCDSGGFNSGPPGTAAAPISIESGEAPQKKSKGRISKKKQKAVAKELEAQQEDGDDGSGSVGSGEQRPSKKARKSAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXEGDGLEGPVLFAVGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTAQDKKENTATQDDDGDXXXXXX--SQAGDENGGGXDK-----EGPSXXEKNSTAEKDAAGREAAKTEGSGSPTKKNSLRGGRKKHGVFVVNLLYTLCDEEKLESLFSAFGRVTAVVLTRPPEGQKVSGIASVYFDTAEEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPEQAAKATNKAKPLEETRCTLCGAIGHDD------------EEGHLADACPYVDVMEEGPEPYCSVCGKAGHSIDACETACKGKSQLKFSCITCRDDGHTQCGKETILVFGNERGHAMTCCNCGLERHDWRSCPHQTEAEILRECGYRFNSSAXXXXXXXXXXXXXKTYMVCYNCGKQGHGKSECPVPRQTQTPGRFGTHHN---------------------------------------------GGG---YHQHQQ----------------------------------------------------------ERGGTHNRYEHQMASPTDSRSSFPRWGDNGAVSNGGSSSGTLHRAYHPGGNFGSDSXXXXXXXXXEDRHRSSGHRGERXXXXXXXXXXXXXXXSSRGQKGGYHSYSRDQHQPAXXXXXXYSHHSSGSHQCSRYSSGQPYSSGGQSYSAGRRGGGTRDAHASPRSYGY 859

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig146.3530.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig146.3530.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LLH6_ECTSI	0.000e+0	66.87	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 673..689 e-value: 0.0022 score: 27.2 coord: 538..554 e-value: 0.15 score: 16.2 coord: 520..536 e-value: 0.9 score: 11.5 coord: 565..581 e-value: 1.5 score: 10.2 coord: 621..637 e-value: 2.8 score: 8.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 674..688 e-value: 1.9E-4 score: 21.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 674..688 score: 10.625
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 539..553 score: 8.515
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 416..489 e-value: 1.7E-6 score: 37.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 417..486 e-value: 9.1E-10 score: 38.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 415..493 score: 12.629
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 330..498 e-value: 5.4E-17 score: 64.2
None	No IPR available	GENE3D	4.10.60.10		coord: 618..706 e-value: 2.5E-6 score: 29.5
None	No IPR available	GENE3D	4.10.60.10		coord: 501..557 e-value: 4.0E-7 score: 31.6
None	No IPR available	PANTHER	PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	coord: 156..701
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 342..488
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 655..693
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 511..554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig146	contig	Ecto-sp13_S_contig146:14373..22003 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig146.3530.1	mRNA_Ecto-sp13_S_contig146.3530.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig146 12407..22179 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig146.3530.1 ID=prot_Ecto-sp13_S_contig146.3530.1|Name=mRNA_Ecto-sp13_S_contig146.3530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=986bp
MSRLSYSETRDGIVPGVSEEGVETKGPSTSGGKRKRARDDDIDGVAEAEA
NGGSGGAASPGAESLSSYSLMGVVDGNEGKDVAGGACTVEAEAAADPAPS
PSADGNARAGADAPAADDGDDEVVEIPPPSAAPAVMEVSGEADCDSGGFK
SGSPGTAAAPISIESGEAPKKKSKSRKSKNKQKAAAKDLEAQQEDGGGGS
GSVGSGEQRPSKKARKSAGAKAKDSDVSEGGSDDDASEGGDADESKGIGN
DGDGGDGGEGGGSEGPVLLTVGQPMSKKMRKMAKGRLSKWALKFTGTRTY
APPAVPVIEPINDDYLASFGRSYAEAKSLTALDKNDNTGTQDDDDDDDDD
GDGHSQAGDENGGGGDSSSGDKEGPSDDEKNDAAEKDAADREAAKTEGPG
SPTKKNSLSGGRKKHGVFVVNLLYTLCDEEKLESLFSTFGRVTAVVLTRP
PEGKRVAGSASVYFGTSEEAQKALAADGMDIRGRCVGIREVRLSVDKRYF
VEPEQAAKATNKAKPLEATRCTLCGAIGHDDKNCPFYACSRCWEEGHLAD
ACPYVDVMEEGPEPYCSLCGKAGHSIDACETACTGKSQLKFSCITCRDDG
HTQCGKETILVFGNERGDAMTCCNCGLERHDRRSCPHQTEAEVLRECGYR
FNSSAGGGNRRKSTGGGGKTYMMCYNCGKQGHSKSECPVPRQTQTPGRFG
TSNNYNRNDQPRVPAADWKQEWSASNNNTLSFNSLSQNHGSGKFRNDPTG
SGQQHHHQAQQPTHLPSAYLNDLAQPPSPLQPTRRDGGAAAFSGPPSPPF
HHRNHNSHHDGGGYHQHQQERGGTHNRYQHQMATPTDSRSSFPRWGDDAA
VSNGGSGSGTLHRAYHPGGNFGSDSSGGGGRRVEDRHRSSGHRGERYSSS
RSGSDRYSGGGSSRGQKGGYHSYNRDQHQPAPTPSPSYSHHSSGSHQRSR
YSSGQPYSSGGQSHSAGRRGGGTRDSHANPRSYGY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf
IPR036875	Znf_CCHC_sf