mRNA_Ecto-sp13_S_contig14591.3523.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14591.3523.1
Unique NamemRNA_Ecto-sp13_S_contig14591.3523.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: D7FP93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP93_ECTSI)

HSP 1 Score: 692 bits (1785), Expect = 5.560e-248
Identity = 356/405 (87.90%), Postives = 369/405 (91.11%), Query Frame = 1
Query:    1 LGLVGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSDVQVEKGTLCSGVRTRDGGGVRSGDCVAAVRKLDWFTFSKEQDPLDV----ALEEDQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGLVIVAADVIYDEGLTDALFEALKSLMPVPSLRTRGLGKEDRNCDGSVSRTADNATKPLSHQTTPSTTATPSCEDSAVTGVRVNKPVDDHDRHPLGTDTVLYLAIEKRFNFSVAELSVAAAGYNALLRNVVDVTDKDGVGTGVDGCTQQGLKRAKKEFEGNRLPLSFQQCFRYKRSNAMELWEIRRRPLRSGIS 1203
            LGLVGQQVWSASFLLGDFVLTH+ELF GMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLL RNVEANRHLFALE SA  DDDAAAPR AGGGDSDVQVE GTLCSGVR+ DGG  RSGDCVAAVRKLDWFTFSKEQD LDV    +LEEDQAQSPAFP+ ADCAGMGDV+NNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGG VIVAADVIYDEGLTDALF+AL  LMPVPSLR RGLGKEDRNCD  VS TADNATKPL HQTTPSTT TPSCEDSAVT V V+KPVDDHD HPLGT+ VLYLA+EKRFNFSVAELSVAA GY+ALLRNVVDVT+ DGVGTGVDGCTQQGLK AKK FEG RLPLSFQQCFRY+RSNAMELWEIRRRP+ S IS
Sbjct:  104 LGLVGQQVWSASFLLGDFVLTHNELFVGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLDRNVEANRHLFALEPSATHDDDAAAPRAAGGGDSDVQVESGTLCSGVRSSDGGRARSGDCVAAVRKLDWFTFSKEQDSLDVTTCDSLEEDQAQSPAFPSEADCAGMGDVQNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGPVIVAADVIYDEGLTDALFQALTLLMPVPSLRARGLGKEDRNCDSKVSSTADNATKPLPHQTTPSTTPTPSCEDSAVTYVPVSKPVDDHDCHPLGTNAVLYLALEKRFNFSVAELSVAATGYSALLRNVVDVTENDGVGTGVDGCTQQGLKSAKKAFEGRRLPLSFQQCFRYERSNAMELWEIRRRPVSSEIS 508          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: A0A6H5L0F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F3_9PHAE)

HSP 1 Score: 649 bits (1675), Expect = 3.370e-231
Identity = 339/401 (84.54%), Postives = 355/401 (88.53%), Query Frame = 1
Query:    1 LGLVGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSDVQVEKGTLCSGVRTRDGGGVRSGDCVAAVRKLDWFTFSKEQDPLDVALEEDQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGLVIVAADVIYDEGLTDALFEALKSLMPVPSLRTRGLGKEDRNCDGSVSRTADNATKPLSHQTTPSTTATPSCEDSAVTGVRVNKPVDDHDRHPLGTDTVLYLAIEKRFNFSVAELSVAAAGYNALLRNVVDVTDKDGVGTGVDGCTQQGLKRAKKEFEGNRLPLSFQQCFRYKRSNAMELWEIRRRPLRSGIS 1203
            LGLVGQQVWSASFLLGDFVLTHDELF GMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALE SAV DDDAA PRDAGGG SDVQVE GTLCSGVR+RDGGG RSGDCVAAVRKLDWFTFSKEQDP D+    ++ Q  AF + AD AGMGDVKNN NDDRTTGTGTCG FSWR GELDGLS ISDSKRGGLVIVAADVIYDEGLTDALFEALK LMPVPSLRTRGLGK+ RNC+GS S TADNATK L H TTPSTTATPSCED AVT V V+KPVDDH+ HPLGTD VLYLA+EKRFNFS AELSVAA GYNAL+RNV  VT+++GVGTGVD CTQQGL+ AKK FEG RLPLSFQQCFRY+RSNAMELWEIRRRP    IS
Sbjct:  112 LGLVGQQVWSASFLLGDFVLTHDELFAGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPSAVLDDDAA-PRDAGGGYSDVQVENGTLCSGVRSRDGGGPRSGDCVAAVRKLDWFTFSKEQDPPDLTTCVEEDQRHAFSSEADIAGMGDVKNNPNDDRTTGTGTCGRFSWRDGELDGLSNISDSKRGGLVIVAADVIYDEGLTDALFEALKLLMPVPSLRTRGLGKDGRNCNGSNSSTADNATKTLPHHTTPSTTATPSCEDLAVTDVPVSKPVDDHECHPLGTDAVLYLALEKRFNFSAAELSVAATGYNALMRNVEIVTEENGVGTGVDDCTQQGLQSAKKGFEGRRLPLSFQQCFRYERSNAMELWEIRRRPESREIS 511          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: B9RQQ2_RICCO (Uncharacterized protein n=3 Tax=Ricinus communis TaxID=3988 RepID=B9RQQ2_RICCO)

HSP 1 Score: 92.8 bits (229), Expect = 2.640e-17
Identity = 100/397 (25.19%), Postives = 146/397 (36.78%), Query Frame = 1
Query:   10 VGQQVWSASFLLGDFVL----THDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSDVQVEKGTLCSGVRTRDGGGVRSGDCVAA--VRKLDWFTFSKEQDPLDVALEEDQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGLVIVAADVIYDEGLTDALFEALKSLMPVPSLRTRGLGKEDRNCDGSVSRTADNATKPLSHQTTPSTTATPSCEDSAVTGVRVNKPVDDHDRHPLGTDTVLYLAIEKRFNFSVAELSVAAAGYNALLRNVVDVTDKDGVGTGVDGCTQQGLKRAKKEFEGNRLPLSF--QQCFRYKRSNAMELWEIR 1176
            VG QVW A  +L DFVL    T  E F+G+ +L+LGAG G+VG++ A VA+  +LTD  DE+L+  ARNV+ N  +                                                +C +A  VR+LDW                      ++P +  C  +    +               +SW   E++         +G  +++AADVIY + LTDALF  L +LMP                                                                  LG++ VLYLA+EKR+NFS+ +L V A GY   L  + +  + + +  G   C           F G R+ LS   Q    Y R N +ELW+I+
Sbjct:   99 VGLQVWKAELVLSDFVLHKMFTSSE-FDGISLLELGAGTGLVGMLLAHVAKVVFLTDRGDEILENCARNVQLNSEVL-----------------------------------------------NCRSAIHVRELDWMN--------------------SWPPIEHCGNLAGPMS-----------VISRYSWIPAEIE-------EAQGVSLLLAADVIYSDDLTDALFSILGTLMP------------------------------------------------------------------LGSEKVLYLALEKRYNFSLDDLDVVANGYKHFLSYLKE-EEYEELEYGSSPC-----------FVGKRIDLSLIPQYVRGYDRGNDVELWQIK 331          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: A0A6B2LAN9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAN9_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 5.900e-17
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   10 VGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLF 228
            VG QVW  + LLGDF+L + ELF+   +++LG G G  GLIA+R+A++CYLTD+ +EVLK   RNV  N HLF
Sbjct:   71 VGLQVWRGALLLGDFILNNQELFKNATIMELGCGSGFSGLIASRIAKKCYLTDFDEEVLKNCQRNVSLNSHLF 143          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: M3VWM3_FELCA (Methyltransferase like 22 n=1 Tax=Felis catus TaxID=9685 RepID=M3VWM3_FELCA)

HSP 1 Score: 89.0 bits (219), Expect = 1.140e-15
Identity = 70/230 (30.43%), Postives = 98/230 (42.61%), Query Frame = 1
Query:   10 VGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSDVQVEKGTLCSGVRTRDGGGVRSGDCVAAVRKLDWFTFSKEQDPLDVALEEDQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGLVIVAADVIYDEGLTDALFEALKSL 699
            VG+QVW  + LL D++L   +LF+G  VL+LGAG G+  +IAA VAR  Y TD   ++L +  RN+  N HL A   S+  D  +  P      D           SG  +    G   G  V  V++LDW             L +D    P                              PFSW + +      +SD      +++AA+V YD+ LTDALF+ L  L
Sbjct:  164 VGKQVWRGALLLADYILFQRDLFQGRTVLELGAGTGLASIIAATVARTVYCTDVGADLLAMCQRNIALNGHLTAAGESSSCDGSSGHPPLTVRADPSRAAGGALPLSGRSSPWASGPPGG--VVKVKELDW-------------LRDDLCTDPEV----------------------------PFSWSQED------VSDLYSHTTILLAAEVFYDDDLTDALFKTLSRL 344          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: UPI00155FF90A (methyltransferase-like protein 22 isoform X1 n=2 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI00155FF90A)

HSP 1 Score: 82.8 bits (203), Expect = 5.760e-14
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   10 VGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLF 228
            VG+QVW  +FL+ DF+L+H +LF+G  VL+LGAG GV  ++ A VA+R Y TD   ++L +  RNV  N+H+ 
Sbjct:    8 VGKQVWRGAFLMADFILSHRDLFQGCTVLELGAGTGVTSIVMATVAKRVYCTDVGQDLLSMCERNVALNKHIL 80          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: UPI00188DCC73 (methyltransferase-like protein 22 n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188DCC73)

HSP 1 Score: 82.0 bits (201), Expect = 1.840e-13
Identity = 66/230 (28.70%), Postives = 93/230 (40.43%), Query Frame = 1
Query:   10 VGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSDVQVEKGTLCSGVRTRDGGGVRSGDCVAAVRKLDWFTFSKEQDPLDVALEEDQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGLVIVAADVIYDEGLTDALFEALKSL 699
            VG+QVW  + LL D++L+  +LF+G  VL+LGAG G+V +IAA +AR  Y TD   ++L +  RN   N HL A                                       GG V+       V++LDW             L+ D    PA                             PFSW + +L      +D      V++AA+V YD+ LTDALF+ L +L
Sbjct:  163 VGKQVWRGALLLADYILSQPDLFQGRTVLELGAGMGLVSIIAATMARTVYCTDVGTDLLAMCQRNTSLNSHLTAAA-------------------------------------GGTVK-------VKELDW-------------LKVDLCTDPAA----------------------------PFSWSEEDL------TDLYEHTTVLLAAEVFYDDDLTDALFKTLSAL 301          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: A0A6J3PYW2_TURTR (methyltransferase-like protein 22 isoform X2 n=4 Tax=Delphinidae TaxID=9726 RepID=A0A6J3PYW2_TURTR)

HSP 1 Score: 82.4 bits (202), Expect = 2.270e-13
Identity = 70/244 (28.69%), Postives = 100/244 (40.98%), Query Frame = 1
Query:   10 VGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSDVQVEKGTLCSGVRTRDGGGVRSGDCVAAVRKLDW---------FTFSKEQDPLDVALEE-----DQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGLVIVAADVIYDEGLTDALFEALKSL 699
            VG+QVW  +  L D++L+  +LF+G  VL+LGAG G+  ++AA VA+  Y TD   ++L +  RN+  N HL A                AGGG                            V  V++LDW         F F      L V L E     ++  +P  P+                     T    PFSW + +      ISD      +++AA+V YD+ LTDALF+ L  L
Sbjct:  250 VGKQVWRGALFLADYILSQRDLFQGRTVLELGAGTGLASILAATVAQTVYCTDVGADLLAMCQRNIALNSHLTA----------------AGGG----------------------------VIKVKELDWLKDDLCTGAFLFPVRCQLLSVCLGESWWPAEKGLNPRCPSPF-------------------TDPEVPFSWSEED------ISDLYGHTTIVLAAEVFYDDDLTDALFKTLSRL 424          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: A0A6J3PYP0_TURTR (methyltransferase-like protein 22 isoform X1 n=7 Tax=Delphinidae TaxID=9726 RepID=A0A6J3PYP0_TURTR)

HSP 1 Score: 82.4 bits (202), Expect = 2.370e-13
Identity = 70/244 (28.69%), Postives = 100/244 (40.98%), Query Frame = 1
Query:   10 VGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSDVQVEKGTLCSGVRTRDGGGVRSGDCVAAVRKLDW---------FTFSKEQDPLDVALEE-----DQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGLVIVAADVIYDEGLTDALFEALKSL 699
            VG+QVW  +  L D++L+  +LF+G  VL+LGAG G+  ++AA VA+  Y TD   ++L +  RN+  N HL A                AGGG                            V  V++LDW         F F      L V L E     ++  +P  P+                     T    PFSW + +      ISD      +++AA+V YD+ LTDALF+ L  L
Sbjct:  250 VGKQVWRGALFLADYILSQRDLFQGRTVLELGAGTGLASILAATVAQTVYCTDVGADLLAMCQRNIALNSHLTA----------------AGGG----------------------------VIKVKELDWLKDDLCTGAFLFPVRCQLLSVCLGESWWPAEKGLNPRCPSPF-------------------TDPEVPFSWSEED------ISDLYGHTTIVLAAEVFYDDDLTDALFKTLSRL 424          
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Match: UPI001441E834 (methyltransferase-like protein 22 isoform X6 n=3 Tax=Delphinidae TaxID=9726 RepID=UPI001441E834)

HSP 1 Score: 81.6 bits (200), Expect = 2.440e-13
Identity = 70/244 (28.69%), Postives = 99/244 (40.57%), Query Frame = 1
Query:   10 VGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSDVQVEKGTLCSGVRTRDGGGVRSGDCVAAVRKLDW---------FTFSKEQDPLDVALEE-----DQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGLVIVAADVIYDEGLTDALFEALKSL 699
            VG+QVW  +  L D++L+  +LF+G  VL+LGAG G+  ++AA +A+  Y TD   ++L +  RN+  N HL A                AGGG                            V  VR+LDW         F F      L V L E     ++  +P  P+                     T    PFSW + +      ISD      +++AA+V YD  LTDALF+ L  L
Sbjct:  181 VGKQVWRGALFLADYILSQRDLFQGRTVLELGAGTGLASILAATMAQTVYCTDVGADLLAMCQRNIALNSHLTA----------------AGGG----------------------------VIKVRELDWLKDDLCTGTFLFPVRCQLLSVCLGESWWPAEKGLNPRCPSPF-------------------TDPEVPFSWSEED------ISDLYGHTTIVLAAEVFYDNDLTDALFKTLSRL 355          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14591.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP93_ECTSI5.560e-24887.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0F3_9PHAE3.370e-23184.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B9RQQ2_RICCO2.640e-1725.19Uncharacterized protein n=3 Tax=Ricinus communis T... [more]
A0A6B2LAN9_9EUKA5.900e-1754.79Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
M3VWM3_FELCA1.140e-1530.43Methyltransferase like 22 n=1 Tax=Felis catus TaxI... [more]
UPI00155FF90A5.760e-1447.95methyltransferase-like protein 22 isoform X1 n=2 T... [more]
UPI00188DCC731.840e-1328.70methyltransferase-like protein 22 n=1 Tax=Talpa oc... [more]
A0A6J3PYW2_TURTR2.270e-1328.69methyltransferase-like protein 22 isoform X2 n=4 T... [more]
A0A6J3PYP0_TURTR2.370e-1328.69methyltransferase-like protein 22 isoform X1 n=7 T... [more]
UPI001441E8342.440e-1328.69methyltransferase-like protein 22 isoform X6 n=3 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14591contigEcto-sp13_S_contig14591:1680..4381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMammalia
Stop1
Start0
Seed ortholog score96.7
Seed ortholog evalue2.7e-17
Seed eggNOG ortholog13616.ENSMODP00000007169
Preferred nameMETTL22
Model size1209
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0031072,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0140096,GO:1901564
Exons4
EggNOG free text desc.Methyltransferase like 22
EggNOG OGs38EMM@33154,3BCIV@33208,3CSE9@33213,3JCX0@40674,489JE@7711,48XHF@7742,4K2YK@9263,KOG2497@1,KOG2497@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-08_000300.1
Cds size1209
COG Functional cat.S
Best tax levelMetatheria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462779.1441236-CDS-Ecto-sp13_S_contig14591:1679..24321681462779.1441236-CDS-Ecto-sp13_S_contig14591:1679..2432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14591 1680..2432 -
1681462779.1559346-CDS-Ecto-sp13_S_contig14591:2866..31421681462779.1559346-CDS-Ecto-sp13_S_contig14591:2866..3142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14591 2867..3142 -
1681462779.1688073-CDS-Ecto-sp13_S_contig14591:3385..34751681462779.1688073-CDS-Ecto-sp13_S_contig14591:3385..3475Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14591 3386..3475 -
1681462779.1780283-CDS-Ecto-sp13_S_contig14591:4291..43811681462779.1780283-CDS-Ecto-sp13_S_contig14591:4291..4381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14591 4292..4381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14591.3523.1prot_Ecto-sp13_S_contig14591.3523.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14591 1680..4381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14591.3523.1

>prot_Ecto-sp13_S_contig14591.3523.1 ID=prot_Ecto-sp13_S_contig14591.3523.1|Name=mRNA_Ecto-sp13_S_contig14591.3523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp
LGLVGQQVWSASFLLGDFVLTHDELFEGMQVLDLGAGPGVVGLIAARVAR
RCYLTDYHDEVLKLLARNVEANRHLFALEASAVPDDDAAAPRDAGGGDSD
VQVEKGTLCSGVRTRDGGGVRSGDCVAAVRKLDWFTFSKEQDPLDVALEE
DQAQSPAFPTVADCAGMGDVKNNTNDDRTTGTGTCGPFSWRKGELDGLSL
ISDSKRGGLVIVAADVIYDEGLTDALFEALKSLMPVPSLRTRGLGKEDRN
CDGSVSRTADNATKPLSHQTTPSTTATPSCEDSAVTGVRVNKPVDDHDRH
PLGTDTVLYLAIEKRFNFSVAELSVAAAGYNALLRNVVDVTDKDGVGTGV
DGCTQQGLKRAKKEFEGNRLPLSFQQCFRYKRSNAMELWEIRRRPLRSGI
SN*
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mRNA from alignment at Ecto-sp13_S_contig14591:1680..4381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14591.3523.1 ID=mRNA_Ecto-sp13_S_contig14591.3523.1|Name=mRNA_Ecto-sp13_S_contig14591.3523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14591:1680..4381- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGGTTGGTCGGACAGCAGGTCTGGTCAGCGTCATTCCTGCTCGGCGA CTTCGTGCTGACCCACGACGAGCTGTTCGAGGGTATGCAGGTACATTGAG TTACAGGTTATGGGCCAAACCAAAATCGCGCACGCTATTGTAATTGGCAG AGGCTGTACAGTCCCGAGGGACGAAAGTTTACTTGGTTTTAGACAGAAAA GTGTCCCGAAATGTCCTGGGGAGGCTGTACAGTCCCGAGGGACGAAAGTT TACTTGGTTTTAGAGAGAAAAGTGTCCCGAAATGTCCTGGGGACTCTCTT CAGTATGTAGTCTACGAAGCCAAGTCCGCAATCTTTCCAGTACTAGTAGG CTATGGAGACCTTTACTTTTACCAAGAAGGGGACACGCGACTTTGGAGAA AAGTGAAGAGTGCAGCAAATCAGAGGCCGAAGGAGAGCCATCACACCGCG TATCACACAACATACCACCTCACACAATCATGGAAGGCCAAGGTTTCCCA TGTGCTTTTTCACAGCGGAGCCTACTGCAACTGCGGTGCGGCAAACAAAC GTTTTGAGTGTTATGTCCCCAAAAATGTCCCCATACGGGGGTGCCCAGTA CAAATAGTGGTAAATTTTAGATGCCATTAAGCACGACGCAGTAAATGATA GCTTTTGGAATCAAGCAAGAACCCGGGCTTCCCAAAAGTCTATTGCTGAT GAGCTCAACTTTTTGTGGACGTGCTGACCAACGACTTTCTTTCCTCGGCT ATCCCAACCACCGGGTTGAACCACCACCAACCTCTTTTGGCTTCACCATT CTACTCCCATTTGTTTTTCATGTTGTCGCTTGGAAACGTGTCGTCGACTC GCGTTACCGTTCCACTCCTTCACTGCTGCTTCTACTGTTTCAATCCTTCC CTCAAGGTGCTCGACCTTGGCGCCGGTCCGGGGGTAGTCGGTTTGATCGC AGCCCGGGTCGCTCGGAGATGCTATCTGACGGACTACCACGATGAGGTGT GTTGCCGCTTGTTGCCAGGCGCTGCGTTGACAATTGACTGTGTTGGAGCG GTTTTGCGTACGTACGACGTTGTTCCCTGATGCTCTGACAGACATCATCC GTCGCCAGCACTTCGCGCCCCCAAGTAGTAGGAGAAACGCGCAAAAGAGA GAGTTATTTGTAGGCCAAACGTCTCATGTTCGCCTCGGCCGTGCTTGCGC ATCGCCCCTATGGTCGTTCTATGGCGTGTGGTACCGTAGGTGCTCAAGCT TCTCGCTCGCAACGTAGAGGCGAACAGACACCTTTTTGCCCTTGAGGCAT CGGCGGTCCCTGACGACGACGCCGCCGCTCCGAGAGATGCCGGTGGTGGC GATAGTGATGTCCAGGTCGAAAAAGGCACTTTGTGCAGCGGTGTTCGTAC AAGGGATGGAGGTGGAGTTCGGTCAGGGGATTGCGTGGCGGCAGTCCGGA AGCTGGATTGGTTCACTTTTTCCAAGGAACAGGATCCTCTTGACGTAGCT TTGGAGGAGGACCAGGTCAGAGAAATAGCCGTCAGTTGCTCCTAACTTTG GGAGATGATGTCGAGTGTGGAGAGGCACACTCCCCGCGAGCTTTTTGCAC GGGCGCCTGGCGTCCAGAGTATCGGCGTGTCTCCTGGCGGTTTCTCACAA TCTTTCCATCGCCACAGCAGTGCCCCACAAGGACCCGACGGAAGGCGATC ATGTGGTGGAAAGACCCGACATGTTTGATTATAGCTACCGACGGTGAGCG GGCATAGGTCTGCGTACTTGGTTTATCTCGCATAAAGTCAGGGCTGTTCG GTCGCTGCATGACGTCGCTGTCTCACTTGGTGTTCCAGGGAAGCGCGAGC AGCGGGATGTAGTATAGGATGAACAGACGGAGCACTTGTTTTGACTCGTG GTACACCCGCCTGCCTGCTGTGTCGCGGCCGCAAACTCATGTTTGTTAGG CGCAGAGCCCGGCTTTTCCAACCGTGGCAGACTGCGCCGGGATGGGCGAC GTGAAGAACAACACCAATGATGACCGCACTACTGGCACTGGCACTTGCGG TCCGTTTTCGTGGAGAAAGGGCGAGCTGGACGGACTGTCCCTGATTTCGG ATTCCAAGCGCGGCGGGCTCGTGATTGTCGCTGCTGACGTCATCTACGAC GAGGGCCTAACGGATGCGCTCTTCGAAGCACTCAAGTCGCTCATGCCCGT GCCGTCGTTGCGCACAAGAGGTCTTGGCAAAGAAGACAGGAACTGCGACG GTAGCGTCTCGAGGACCGCGGACAATGCCACGAAACCGCTGTCACATCAG ACGACACCATCAACCACAGCGACTCCATCTTGCGAAGACTCGGCCGTTAC TGGCGTACGTGTCAATAAACCCGTCGATGATCACGATCGTCATCCACTTG GCACAGATACAGTGCTCTACCTCGCCATCGAGAAACGCTTCAATTTTTCC GTAGCCGAGTTGTCAGTAGCAGCAGCGGGGTACAACGCTCTTTTGAGAAA CGTTGTAGATGTGACGGACAAAGACGGGGTGGGTACTGGGGTAGACGGCT GTACACAGCAGGGGCTGAAGCGCGCAAAGAAGGAGTTCGAGGGCAACAGA CTTCCCCTTTCTTTCCAGCAGTGTTTTCGGTATAAACGGAGCAACGCAAT GGAGCTCTGGGAGATTCGGCGTCGGCCGCTAAGAAGTGGAATTTCGAACT AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14591:1680..4381-

>mRNA_Ecto-sp13_S_contig14591.3523.1 ID=mRNA_Ecto-sp13_S_contig14591.3523.1|Name=mRNA_Ecto-sp13_S_contig14591.3523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14591:1680..4381- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGGTTGGTCGGACAGCAGGTCTGGTCAGCGTCATTCCTGCTCGGCGA
CTTCGTGCTGACCCACGACGAGCTGTTCGAGGGTATGCAGGTGCTCGACC
TTGGCGCCGGTCCGGGGGTAGTCGGTTTGATCGCAGCCCGGGTCGCTCGG
AGATGCTATCTGACGGACTACCACGATGAGGTGCTCAAGCTTCTCGCTCG
CAACGTAGAGGCGAACAGACACCTTTTTGCCCTTGAGGCATCGGCGGTCC
CTGACGACGACGCCGCCGCTCCGAGAGATGCCGGTGGTGGCGATAGTGAT
GTCCAGGTCGAAAAAGGCACTTTGTGCAGCGGTGTTCGTACAAGGGATGG
AGGTGGAGTTCGGTCAGGGGATTGCGTGGCGGCAGTCCGGAAGCTGGATT
GGTTCACTTTTTCCAAGGAACAGGATCCTCTTGACGTAGCTTTGGAGGAG
GACCAGGCGCAGAGCCCGGCTTTTCCAACCGTGGCAGACTGCGCCGGGAT
GGGCGACGTGAAGAACAACACCAATGATGACCGCACTACTGGCACTGGCA
CTTGCGGTCCGTTTTCGTGGAGAAAGGGCGAGCTGGACGGACTGTCCCTG
ATTTCGGATTCCAAGCGCGGCGGGCTCGTGATTGTCGCTGCTGACGTCAT
CTACGACGAGGGCCTAACGGATGCGCTCTTCGAAGCACTCAAGTCGCTCA
TGCCCGTGCCGTCGTTGCGCACAAGAGGTCTTGGCAAAGAAGACAGGAAC
TGCGACGGTAGCGTCTCGAGGACCGCGGACAATGCCACGAAACCGCTGTC
ACATCAGACGACACCATCAACCACAGCGACTCCATCTTGCGAAGACTCGG
CCGTTACTGGCGTACGTGTCAATAAACCCGTCGATGATCACGATCGTCAT
CCACTTGGCACAGATACAGTGCTCTACCTCGCCATCGAGAAACGCTTCAA
TTTTTCCGTAGCCGAGTTGTCAGTAGCAGCAGCGGGGTACAACGCTCTTT
TGAGAAACGTTGTAGATGTGACGGACAAAGACGGGGTGGGTACTGGGGTA
GACGGCTGTACACAGCAGGGGCTGAAGCGCGCAAAGAAGGAGTTCGAGGG
CAACAGACTTCCCCTTTCTTTCCAGCAGTGTTTTCGGTATAAACGGAGCA
ACGCAATGGAGCTCTGGGAGATTCGGCGTCGGCCGCTAAGAAGTGGAATT
TCGAACTAA
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