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Homology
BLAST of mRNA_Ecto-sp13_S_contig1459.3522.1 vs. uniprot
Match: D7G1L7_ECTSI (Morn repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L7_ECTSI) HSP 1 Score: 453 bits (1166), Expect = 2.950e-154 Identity = 343/363 (94.49%), Postives = 347/363 (95.59%), Query Frame = 2
Query: 272 ARVPMSGKLVRKKQRNFEDGTRYDGGWARGLFHGQGTLTWANGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEIKGRTLTGVWNQGVPDFNPPVDGYKRFVFPDGKGVYDGHWREYKRHGHGSFTFSNGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPSTRQCXXXXXXXXXXXXXXRHYFHSSSPGDDCDPETATGGDYYXXXXXXXXXXXXXVYVDAGGERHPGLWVDGICPEVDFSHVPEGSGRFRYSFSGGTYEGEWLNRAPHGQGRMEYSDGTVYVGGWQDFKFHGYGKLVQRGVXXXXXXXXXXXXXAGSAGATPEIDDVRVDVVREQEL 1360
+RVPMSGKLVRKKQRNFEDGTRYDGGW RGLFHGQGTLTWANGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LEIKGRTLTGVWNQGVPDFNPPVDGYKRFVFPDGKGVYDGHWR YKRHG GSF FSNGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPSTRQCXXXXXXXXXXXXXX H FHSSS GDDCDPET TGGDYYXXXXXXXXXXXX V+VDAGGERH GLWVDGICPEVDFSHVPEGSG FRYSFSGGTYEGEWLNRAPHGQGRMEYSDGTVYVGGWQDFKFHGYGKLVQRGV XXXXXXXXXXXX+GSAGA PEI+D RVDVV EQEL
Sbjct: 67 SRVPMSGKLVRKKQRNFEDGTRYDGGWERGLFHGQGTLTWANGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEIKGRTLTGVWNQGVPDFNPPVDGYKRFVFPDGKGVYDGHWRGYKRHGQGSFAFSNGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPSTRQCXXXXXXXXXXXXXXXHDFHSSSAGDDCDPETKTGGDYYXXXXXXXXXXXXGVFVDAGGERHAGLWVDGICPEVDFSHVPEGSGNFRYSFSGGTYEGEWLNRAPHGQGRMEYSDGTVYVGGWQDFKFHGYGKLVQRGVVXXXXXXXXXXXXSGSAGAVPEINDARVDVVGEQEL 429
BLAST of mRNA_Ecto-sp13_S_contig1459.3522.1 vs. uniprot
Match: A0A7S2UZS7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS7_9STRA) HSP 1 Score: 207 bits (526), Expect = 2.470e-59 Identity = 201/303 (66.34%), Postives = 225/303 (74.26%), Query Frame = 2
Query: 278 VPMSGKLVRKKQRNFEDGTRYDGGWARGLFHGQGTLTWANGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEIKGRTLTGVWNQGVPDFNPPVDGYKRFVFPDGKGVYDGHWREYKRHGHGSFTFSNGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPSTRQCXXXXXXXXXXXXXXRHYFHSSSPGDDCDPETATGGDYYXXXXXXXXXXXXXVYVDAGGERHPGLWVDGICPEVDFSHVPEGSGRFRYSFSGGTYEGEWLNRAPHGQGRMEYSDGT 1186
+P G+ K ++DGT Y+G W G HG+GT+TW N C XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXL I G+TL G W GVPDF PP DGYKRFVFPDGKG+Y+G+W++ KRHG G+F F N D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +W S RQC XXXXXXXXXXXX HYF+S G AT +YYXXXXXXXX YVDA G H G W G+CPE+DF+ +PE SG+FRY F GGTYEG+W NR PHG+GRM YSDGT
Sbjct: 9 IPDQGRAFYK----YQDGTVYEGQWRNGKHHGKGTITWPNSCSXXXXXXXXXXXXXXXCTFPGGEXXXXXXXXXXXXXXXXLHIAGKTLQGSWTNGVPDFAPPRDGYKRFVFPDGKGIYEGYWKDRKRHGQGTFIFENNDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYTWASIRQCYVXXXXXXXXXXXXXHYFNSEVAG-------ATS-EYYXXXXXXXXMWGEGKYVDADGSVHVGTWEKGVCPEIDFNAIPE-SGQFRYQFQGGTYEGQWRNRMPHGRGRMVYSDGT 298
BLAST of mRNA_Ecto-sp13_S_contig1459.3522.1 vs. uniprot
Match: A0A6S9EAG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EAG9_HETAK) HSP 1 Score: 205 bits (521), Expect = 1.280e-58 Identity = 202/303 (66.67%), Postives = 228/303 (75.25%), Query Frame = 2
Query: 278 VPMSGKLVRKKQRNFEDGTRYDGGWARGLFHGQGTLTWANGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEIKGRTLTGVWNQGVPDFNPPVDGYKRFVFPDGKGVYDGHWREYKRHGHGSFTFSNGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPSTRQCXXXXXXXXXXXXXXRHYFHSSSPGDDCDPETATGGDYYXXXXXXXXXXXXXVYVDAGGERHPGLWVDGICPEVDFSHVPEGSGRFRYSFSGGTYEGEWLNRAPHGQGRMEYSDGT 1186
VP G+ K ++DGT Y+G W G HG+GT+TW N C XXXXXXXXXXXXXXX XXXXXXXXXXXXXXX L I G+TL G W+ GVPDF PP DGYKRFVFPDGKG+Y+G+W++ KRHG G+F F N D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +W S RQC XXXXXXXXXXXX HYF S +PG +Y XXXXXXXXXXXXX YVDA G H G W G+CPE+DF+ +P+ SG+FRY F GGTYEG+W NR PHG+GRM Y+DGT
Sbjct: 7 VPDQGRAFYK----YQDGTVYEGSWRNGKHHGKGTITWPNTCAXXXXXXXXXXXXXXXCTFPGGEXXXXXXXXXXXXXXXTLHIAGKTLQGSWSNGVPDFAPPRDGYKRFVFPDGKGIYEGYWKDRKRHGQGTFIFENNDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYAWGSIRQCYVXXXXXXXXXXXXXHYFASDAPG--------AQSEYXXXXXXXXXXXXXXKYVDADGSVHLGTWEKGVCPEIDFNAIPD-SGQFRYQFQGGTYEGQWANRMPHGKGRMVYADGT 296
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 446.4 |
| Seed ortholog evalue | 1.2e-122 |
| Seed eggNOG ortholog | 2880.D7G1L7 |
| Model size | 1366 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| EggNOG free text desc. | Translation initiation factor IF-2, N-terminal region |
| EggNOG OGs | COG5253@1,KOG0229@2759 |
| Ec32 ortholog description | MORN motif |
| Ec32 ortholog | Ec-26_000910.1 |
| Cds size | 1083 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462779.037109-UTR-Ecto-sp13_S_contig1459:8462..8745 | 1681462779.037109-UTR-Ecto-sp13_S_contig1459:8462..8745 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1459 8463..8745 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462779.0494626-CDS-Ecto-sp13_S_contig1459:8745..8854 | 1681462779.0494626-CDS-Ecto-sp13_S_contig1459:8745..8854 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1459 8746..8854 + |
| 1681462779.0583432-CDS-Ecto-sp13_S_contig1459:9335..9507 | 1681462779.0583432-CDS-Ecto-sp13_S_contig1459:9335..9507 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1459 9336..9507 + |
| 1681462779.0743306-CDS-Ecto-sp13_S_contig1459:9823..9966 | 1681462779.0743306-CDS-Ecto-sp13_S_contig1459:9823..9966 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1459 9824..9966 + |
| 1681462779.085075-CDS-Ecto-sp13_S_contig1459:10211..10285 | 1681462779.085075-CDS-Ecto-sp13_S_contig1459:10211..10285 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1459 10212..10285 + |
| 1681462779.0948262-CDS-Ecto-sp13_S_contig1459:10800..11076 | 1681462779.0948262-CDS-Ecto-sp13_S_contig1459:10800..11076 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1459 10801..11076 + |
| 1681462779.1050565-CDS-Ecto-sp13_S_contig1459:11316..11370 | 1681462779.1050565-CDS-Ecto-sp13_S_contig1459:11316..11370 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1459 11317..11370 + |
| 1681462779.1161761-CDS-Ecto-sp13_S_contig1459:11769..12024 | 1681462779.1161761-CDS-Ecto-sp13_S_contig1459:11769..12024 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1459 11770..12024 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1459.3522.1 >prot_Ecto-sp13_S_contig1459.3522.1 ID=prot_Ecto-sp13_S_contig1459.3522.1|Name=mRNA_Ecto-sp13_S_contig1459.3522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=361bp
MSGKLVRKKQRNFEDGTRYDGGWARGLFHGQGTLTWANGCVYEGGFRRGE RHGTGTCTFPGGERYAGAWHKGKMHGEGTLEIKGRTLTGVWNQGVPDFNP PVDGYKRFVFPDGKGVYDGHWREYKRHGHGSFTFSNGDVYEGQWSHGEMT GEGKYQHASGEMYKGQFKEGRMHGQGTYSWPSTRQCYTGKWKEGLRHGDG RHYFHSSSPGDDCDPETATGGDYYDGEWKEGVMHGEGVYVDAGGERHPGL WVDGICPEVDFSHVPEGSGRFRYSFSGGTYEGEWLNRAPHGQGRMEYSDG TVYVGGWQDFKFHGYGKLVQRGVVFEGEWSEGRMHGAGSAGATPEIDDVR VDVVREQELT* back to topmRNA from alignment at Ecto-sp13_S_contig1459:8463..12024+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1459.3522.1 ID=mRNA_Ecto-sp13_S_contig1459.3522.1|Name=mRNA_Ecto-sp13_S_contig1459.3522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1459:8463..12024+ (Ectocarpus species13 EcNAP12_S_4_19m) GCGAAGGACGTGTATTTTCTGCTCTACGCGCTCTGCAGCGAAGGGGGGTG
ACGCCAATGGGAATGCCCTGGGGGTTTCACGACGTGGCGGAGGCGTGGTG
GTTCGGGGATCCCCAGTCTGTGATTTGTGCGCAAGAGCTCGGCAAGAGCG
ATCTTTTCCGGGTTCCCTCTTGAGGCCTTCACAAAAGATCTCACAGCAGT
GCACAGGCCGTTGTGTATCTCCTGTGGCCCTCTGGCGTTGAACCCGCGTG
AAAATCTGCCCGTAAGATCTCGCTCGAGTACCAATGTCGGGGAAGCTGGT
TCGAAAAAAACAGCGCAACTTCGAGGACGGCACACGATACGATGGAGGAT
GGGCGAGAGGATTGTTCCACGGCCAGGGAACGTTGACATGGGGTAGGTTC
AAGACTAGGGTCCGGTGATAATTTCCGATAATTTGGAAATCTGTGAATGG
ACGGTATGTGGAGCTGCCAGTAGCACGTCCTCTCTTTGCTGTGTGTGGGA
CGAAACACTACTGTACTACAGATTCAGAACATGACTGTACCACCGTCTTG
TACATAGTACACCACAGATGTGTAGTACACCACAGATTTCAGGACTTGGC
CACATACCACACCGATACTCTCACACTATCCATTCATGCGCGCGCCGTTG
TACGCATTCAATGCACCTCACGCTCATTCTGGAGTATTCTGGTTTCACGA
GGTTTGTCTGCATATTGTTTGCGAAGAGGAGCTCCGGCGAGGCCCTGCTG
TTTGCTGTTGGCACTTCGGTTTCTACATCAAAAATCTACGAGTGGTCCAG
ACTGGACATCCTGTGCTTTGCTCTTTCATGTGTACGTTGTTGTTGTTCGT
GTGCGCATGGCCCGTGTTCAAAGCGAATGGCTGTGTATACGAAGGTGGTT
TCCGCCGGGGAGAGCGCCATGGAACCGGGACCTGCACCTTCCCGGGAGGA
GAGCGGTATGCGGGTGCCTGGCACAAAGGGAAGATGCACGGAGAGGGAAC
TCTCGAAATCAAAGGGAGAACGCTTACCGGAGTCTGGAATCAAGGGTGCG
TGGTATCGCATCTCCTTACTTTCGCTGCCCCGACAGCTCCTAAACAAGAC
TACGCGTGGTACCGCTTGATCACCAAGGACGTTGTGGGTGATTGCAGCAT
GCGTTCGGTCGACTGTGGCTGCCAGAGGCTCGAACTCAAACCGCAGCCGA
TGCAAGTACACAGGTTGTCATGTCAAATCTCTGCAGCATCCTTCACCTAT
TAGGCGTGCCTGCCCTCGGAGGGTTGAAACAATGATGATTCTACTCCACT
CAACCGCCACTCCTCCCGTATACCTCTTCCGCAATCGATCAAACATACCC
TGTTTCCAAAGGGTCCCTGACTTCAACCCCCCCGTCGATGGCTACAAGCG
TTTCGTGTTTCCTGACGGAAAGGGCGTGTATGACGGGCACTGGAGGGAAT
ACAAGCGTCATGGTCACGGCTCGTTTACCTTCTCGAATGGTGACGTGTAC
GAAGGTGGGTCCAGTCGTTGTCTTCTTCAGACCAAGCAGAGTGACCACCC
GGAAAAGATGCTGTCTTCCTGGGGGTAGGTAATTATGCTGTCTTCCTGGG
GGTAGGTAGGTTGTGCATATAATAAGATCCTAAGGACGTTGGCACTTCAT
GGCATCGTGATCTTTATTGTACCCATTGAGATTCGGCATCGTTTTTTCCC
ATCCATATTTTTTTATCTCGATATCCACTTGCGGGAAACGTTTTTGAAGG
CCAATGGTCCCACGGGGAGATGACCGGCGAGGGAAAATACCAGCACGCTT
CTGGGGAGATGTACAAGGGACAGGTCTGAAGAGCTGACCACAACTGCTAT
GACTAGAAACATAAAACAGCAACGACAACTAGAATCTCGTGAGAATACGG
GAGATTGCTGATGACTGCTGTCGCGTGAATCGGAGTAAGGGCCTCGACCG
TATCGTAGTCTGGATTCTAATGTACCGTGGAAAGGGAAGGTTACGGTCTC
CGCATTAATTTTGAGCTCTTTCTTTACAGGATCTGGAGATACCGGAACGA
AGAAGCAGCGTGGGTTATGTACAGGCAGATAAAGAGCCCCTCAACCCCGG
CACGATACCTGTGCCTCATAAACCCATTCGATTTCCCAAACATACCGGCT
CGGGCATCAGTCCCACATCATTGAGTCACGCTGCGTCCGACTAACGTGGT
CACGACATAAGTCCCTCTCGAAAATCATGTAGTCCGAACCTTGCTCGGTG
GAGTTCACAGCTAGCTGTATTGCTCCCAACCATTCCTACTTATTCATGCC
TGCTATCCCCGTGGGATCTACGATCACCTTGGGTTTAGTTCAAGGAGGGG
CGCATGCACGGACAGGGGACCTACTCGTGGCCCAGCACCAGGCAGTGCTA
CACCGGGAAGTGGAAGGAAGGGTTACGGCACGGTGACGGCCGCCACTACT
TTCACTCGAGCTCCCCGGGTGACGACTGTGACCCCGAGACGGCGACGGGG
GGAGACTACTACGACGGAGAGTGGAAGGAGGGCGTGATGCATGGGGAGGG
GGTTTACGTGGACGCCGGGGGCGAGAGGCACCCTGGCCTATGGGTGGACG
GAATCTGTCCGGAGGTGAATAGCGGGGAGAACGCACAGCATTGCGGAAAG
AGATAGGTGTTGTAGAATAGCACCATCACGAATGGTTGTACACGATAAGA
GAACGTTCGCTGTCTCGCTTTAGCGCGAAAATCACTGCCTTTTTGTGTGT
GTATTGCTGCCCTTTTATGTGTACTGTGGCTAGCTGTGGTAGGGATTGAA
TCGGTACTCTTATTGATGCTTTCCGCTCCCGCGATTTCCGCCCACGGACC
TCAGGTGGACTTCTCACACGTGCCGGAGGGCAGCGGCAGATTCCGATACA
GTTTTTCGGTAAGGGAAGAAGTCTCGGGGAGGCAATCGAAATGATGGTAG
TTTTGGCAGGAGACCATTAGGCATACCCATCATTAACGGCGTGATGCACG
TCGGGGCGTATATTTCAGACCGAGGGTGTTCGAACCTGCGCGCGGAATAA
GTCTTTTCATTGAAATATGGCAGGGGAGCCGTTTCAGCTTCGTCATGAGG
ATGATGGCGGTGATAACACCGACCAGCACTACCAGTGACTCGACAGTGCG
GTTGGTACGAGATCCGACTTGTAGCTTAGAGAGAAAGATAAAGTTAAGAT
GCGGTCAGGAGTCGAAAATATGGGGTGGCTATATCTCAAATCTCAGCGGA
GATACTCATTCGTCTTGTGCCACACACCGTCGGCGCCTGTCCTTCCTATC
GCGTCAGGGTGGCACGTACGAAGGGGAGTGGCTGAACCGAGCGCCACATG
GACAGGGCCGGATGGAATACAGCGATGGCACCGTGTACGTCGGGGGCTGG
CAGGATTTCAAGTTTCACGGCTACGGTAAACTCGTTCAAAGGGGGGTAGT
GTTCGAGGGAGAGTGGTCGGAAGGGCGCATGCACGGCGCTGGCAGCGCTG
GAGCAACACCCGAAATTGATGATGTAAGGGTTGATGTTGTCAGGGAGCAA
GAGCTTACCTAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1459:8463..12024+ >mRNA_Ecto-sp13_S_contig1459.3522.1 ID=mRNA_Ecto-sp13_S_contig1459.3522.1|Name=mRNA_Ecto-sp13_S_contig1459.3522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1459:8463..12024+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCGGGGAAGCTGGTTCGAAAAAAACAGCGCAACTTCGAGGACGGCAC ACGATACGATGGAGGATGGGCGAGAGGATTGTTCCACGGCCAGGGAACGT TGACATGGGCGAATGGCTGTGTATACGAAGGTGGTTTCCGCCGGGGAGAG CGCCATGGAACCGGGACCTGCACCTTCCCGGGAGGAGAGCGGTATGCGGG TGCCTGGCACAAAGGGAAGATGCACGGAGAGGGAACTCTCGAAATCAAAG GGAGAACGCTTACCGGAGTCTGGAATCAAGGGGTCCCTGACTTCAACCCC CCCGTCGATGGCTACAAGCGTTTCGTGTTTCCTGACGGAAAGGGCGTGTA TGACGGGCACTGGAGGGAATACAAGCGTCATGGTCACGGCTCGTTTACCT TCTCGAATGGTGACGTGTACGAAGGCCAATGGTCCCACGGGGAGATGACC GGCGAGGGAAAATACCAGCACGCTTCTGGGGAGATGTACAAGGGACAGTT CAAGGAGGGGCGCATGCACGGACAGGGGACCTACTCGTGGCCCAGCACCA GGCAGTGCTACACCGGGAAGTGGAAGGAAGGGTTACGGCACGGTGACGGC CGCCACTACTTTCACTCGAGCTCCCCGGGTGACGACTGTGACCCCGAGAC GGCGACGGGGGGAGACTACTACGACGGAGAGTGGAAGGAGGGCGTGATGC ATGGGGAGGGGGTTTACGTGGACGCCGGGGGCGAGAGGCACCCTGGCCTA TGGGTGGACGGAATCTGTCCGGAGGTGGACTTCTCACACGTGCCGGAGGG CAGCGGCAGATTCCGATACAGTTTTTCGGGTGGCACGTACGAAGGGGAGT GGCTGAACCGAGCGCCACATGGACAGGGCCGGATGGAATACAGCGATGGC ACCGTGTACGTCGGGGGCTGGCAGGATTTCAAGTTTCACGGCTACGGTAA ACTCGTTCAAAGGGGGGTAGTGTTCGAGGGAGAGTGGTCGGAAGGGCGCA TGCACGGCGCTGGCAGCGCTGGAGCAACACCCGAAATTGATGATGTAAGG GTTGATGTTGTCAGGGAGCAAGAGCTTACCTAG back to top
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