mRNA_Ecto-sp13_S_contig14579.3512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14579.3512.1
Unique NamemRNA_Ecto-sp13_S_contig14579.3512.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14579.3512.1 vs. uniprot
Match: A0A6H5L0Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y1_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 8.350e-73
Identity = 138/180 (76.67%), Postives = 142/180 (78.89%), Query Frame = -2 
Query:  272 GAAAKKKGVTAFLYVREKRVLGCVIAQRIDTARRAVVLPEPGPKKTEVAAAVGSGLKPSVVAPPPLTRHFSRIGDVESSPAAVASTAVVQREARSFVAGVISGERDPRPLQEEXXXXXXXXXXXXXXXXXXXXXXXXXPPARSPLGVKAAPPRDETGRSAYTGPRRQPSSLDRSSGVGGG 811
            GAAAK KGVTAFLYVREKRVLGCVIAQRIDTARRAVVLPEPGPKKTEVAAAVGSGLKPSVVAPPPLT HF+RIGD++SSPAA AST VVQREA+SFVAG ISGE DPRP QEE                         P ARSPLGV AAPPRDETG SA  GPRRQPSSLD SSGVGGG
Sbjct:   93 GAAAKTKGVTAFLYVREKRVLGCVIAQRIDTARRAVVLPEPGPKKTEVAAAVGSGLKPSVVAPPPLTHHFARIGDIKSSPAAAASTGVVQREAKSFVAGAISGEHDPRPRQEEQQAPRSAEGGRCCVSPSKGGEVASSP-ARSPLGVTAAPPRDETGSSAGAGPRRQPSSLDGSSGVGGG 271
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BLAST of mRNA_Ecto-sp13_S_contig14579.3512.1 vs. uniprot
Match: D7FTU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU4_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.830e-42
Identity = 170/243 (69.96%), Postives = 180/243 (74.07%), Query Frame = -2 
Query:    8 IDTARRAVVLPEPGPKKTEVAAAVGSGLKPSVVAPPPLTRHFSRIGDVESSPAAVA-STAVVQREARSFVAGVISGERDPRPLQEEXXXXXXXXXXXXXXXXXXXXXXXXXPPARSPLGVKAAPPRDETGRSAYTGPRRQPSSLDRSSGVGGGEAGVVAXXXXXXXXXXRGDSXXXXXXXTAVAAPAGCAGXXXXXXXXXXXXXXXXXXRSSLKR--KKLQRGDTKGAPTTTLESFWRPKHVE 727
            IDTARRAVVLPEP PKKTE+AAAVGSG KPSVVAPPPLTRHFSRIG+V SS AA A ST + QR ARSFVAG+ISGE DPRP QE XXXXXXXXXXXXXXXXXXXXXXXXX               ++TG  A  GP R PS LD SSG+GGGEAG VA XXXXXXXXX    XXXXXXX           XXXXXXXXXXXXXXXXXX        KKL+RGDT+GAPTTTLESFWRP   +
Sbjct:  206 IDTARRAVVLPEPRPKKTELAAAVGSGFKPSVVAPPPLTRHFSRIGEVASSTAAAAASTGLAQRPARSFVAGIISGEHDPRPRQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDTGSGASAGPCRPPSPLDGSSGIGGGEAGFVAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKLRRGDTEGAPTTTLESFWRPNDFQ 448
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14579.3512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0Y1_9PHAE8.350e-7376.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU4_ECTSI1.830e-4269.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14579contigEcto-sp13_S_contig14579:411..1261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size851
Hectar predicted targeting categorymitochondrion
Exons1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.075059-CDS-Ecto-sp13_S_contig14579:410..9231681462778.075059-CDS-Ecto-sp13_S_contig14579:410..923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14579 411..923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.0850158-UTR-Ecto-sp13_S_contig14579:923..12611681462778.0850158-UTR-Ecto-sp13_S_contig14579:923..1261Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14579 924..1261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14579.3512.1prot_Ecto-sp13_S_contig14579.3512.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14579 411..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14579.3512.1

>prot_Ecto-sp13_S_contig14579.3512.1 ID=prot_Ecto-sp13_S_contig14579.3512.1|Name=mRNA_Ecto-sp13_S_contig14579.3512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
NALRRAWGAKSFRGLSLVHLWYRHAEAFCVSTTIDPTPPPPPPPTAKPRQ
VQHRRIQRGRRRQWTHRLRHRCRLSSSPPPRPPPPQRRPLPRHRRRCYDQ
AKTAVGGARCTHSFQSRLSVVPPSPPGDSSRGETPPPLPSMTKRNNDGPR
RCSELAVLLLAAVGGRARRR*
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mRNA from alignment at Ecto-sp13_S_contig14579:411..1261+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14579.3512.1 ID=mRNA_Ecto-sp13_S_contig14579.3512.1|Name=mRNA_Ecto-sp13_S_contig14579.3512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=851bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14579:411..1261+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATGCCCTTCGACGTGCTTGGGGCGCCAAAAGCTTTCGAGGGTTGTCGTT
GGTGCACCTTTGGTATCGCCACGCTGAAGCTTTTTGCGTTTCAACGACGA
TCGACCCGACGCCGCCGCCGCCGCCGCCGCCGACGGCGAAGCCCCGGCAG
GTGCAGCACCGGCGCATCCAGCGGGGGCGGCGACGGCAGTGGACCCACCG
CCTCCGCCATCGCTGTCGCCTCTCTTCTTCCCCGCCACCGCGGCCTCCTC
CCCCGCAACGACGCCCGCTTCCCCGCCACCGACGCCGCTGCTACGATCAA
GCGAAGACGGCTGTCGGCGGGGCCCGGTGTACGCACTCCTTCCAGTCTCG
TCTCTCGGTGGTGCCGCCTTCACCCCCAGGGGACTCCTCGCGGGGGGAGA
CGCCCCCCCCCCTCCCTTCGATGACGAAACGCAACAACGACGGCCCTCGG
CGGTGCTCGGAGCTTGCTGTTCTTCTTCTTGCAGCGGTCGGGGGTCGCGC
TCGCCGGAGATGACGCCGGCGACAAAGCTTCTCGCCTCCCGCTGGACTAC
CGCCGTCGACGCGACGGCGGCCGGGGAAGATTCAACGTCGCCGATGCGAG
AAAAGTGACGGGTGAGGGGAGGAGGAGCAACGACGGAGGGCTTGAGACCG
GAGCCCACTGCAGCCGCCACCTCGGTCTTCTTTGGCCCCGGCTCCGGCAA
CACTACAGCCCGGCGAGCGGTGTCGATACGCTGAGCGATGACGCAGCCCA
GAACCCGCTTCTCTCGGACGTACAGAAAGGCTGTGACACCCTTTTTCTTC
GCGGCCGCCCCCGCCCCCGACCCTTCGCACCCACCGCCTCCTGACATGGA
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14579:411..1261+

>mRNA_Ecto-sp13_S_contig14579.3512.1 ID=mRNA_Ecto-sp13_S_contig14579.3512.1|Name=mRNA_Ecto-sp13_S_contig14579.3512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14579:411..1261+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATGCCCTTCGACGTGCTTGGGGCGCCAAAAGCTTTCGAGGGTTGTCGTT
GGTGCACCTTTGGTATCGCCACGCTGAAGCTTTTTGCGTTTCAACGACGA
TCGACCCGACGCCGCCGCCGCCGCCGCCGCCGACGGCGAAGCCCCGGCAG
GTGCAGCACCGGCGCATCCAGCGGGGGCGGCGACGGCAGTGGACCCACCG
CCTCCGCCATCGCTGTCGCCTCTCTTCTTCCCCGCCACCGCGGCCTCCTC
CCCCGCAACGACGCCCGCTTCCCCGCCACCGACGCCGCTGCTACGATCAA
GCGAAGACGGCTGTCGGCGGGGCCCGGTGTACGCACTCCTTCCAGTCTCG
TCTCTCGGTGGTGCCGCCTTCACCCCCAGGGGACTCCTCGCGGGGGGAGA
CGCCCCCCCCCCTCCCTTCGATGACGAAACGCAACAACGACGGCCCTCGG
CGGTGCTCGGAGCTTGCTGTTCTTCTTCTTGCAGCGGTCGGGGGTCGCGC
TCGCCGGAGATGA
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