mRNA_Ecto-sp13_S_contig14578.3511.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14578.3511.1
Unique NamemRNA_Ecto-sp13_S_contig14578.3511.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14578.3511.1 vs. uniprot
Match: D7FIU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU5_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 2.180e-92
Identity = 141/157 (89.81%), Postives = 143/157 (91.08%), Query Frame = 1 
Query:    1 ETGGGGAEGAAAGNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVADHLRTCPPVERMTLPLYPQERLSSVQIAHFAACLSPWCVGRVFHDSVCFKRAGCA 471
            E GGGGA  AAAGNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKV DHLRTCPPVERMTLPLYPQERLS +QIAHFAACLS WCV  VFH SV  +   CA
Sbjct:   25 ERGGGGAGEAAAGNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVTDHLRTCPPVERMTLPLYPQERLSPLQIAHFAACLSRWCVALVFHGSVYTRAPQCA 181
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BLAST of mRNA_Ecto-sp13_S_contig14578.3511.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 4.280e-42
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:  160 ARQVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVADHLRTCPPVERMTLPLYPQERLSSVQIAHFAACL 408
            AR VLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVADHLRTCPPVERMTLPLYPQERLS VQIAHFAACL
Sbjct:  633 ARLVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVADHLRTCPPVERMTLPLYPQERLSPVQIAHFAACL 715
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14578.3511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIU5_ECTSI2.180e-9289.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6P2_9PHAE4.280e-4297.59AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14578contigEcto-sp13_S_contig14578:377..3909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size471
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000810.1
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.0077076-CDS-Ecto-sp13_S_contig14578:376..5441681462778.0077076-CDS-Ecto-sp13_S_contig14578:376..544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14578 377..544 +
1681462778.0223887-CDS-Ecto-sp13_S_contig14578:2940..30631681462778.0223887-CDS-Ecto-sp13_S_contig14578:2940..3063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14578 2941..3063 +
1681462778.0365744-CDS-Ecto-sp13_S_contig14578:3544..36631681462778.0365744-CDS-Ecto-sp13_S_contig14578:3544..3663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14578 3545..3663 +
1681462778.0463579-CDS-Ecto-sp13_S_contig14578:3848..39091681462778.0463579-CDS-Ecto-sp13_S_contig14578:3848..3909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14578 3849..3909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14578.3511.1prot_Ecto-sp13_S_contig14578.3511.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14578 377..3909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14578.3511.1

>prot_Ecto-sp13_S_contig14578.3511.1 ID=prot_Ecto-sp13_S_contig14578.3511.1|Name=mRNA_Ecto-sp13_S_contig14578.3511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
ETGGGGAEGAAAGNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLI
RSNARQVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYK
VADHLRTCPPVERMTLPLYPQERLSSVQIAHFAACLSPWCVGRVFHDSVC
FKRAGCA
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mRNA from alignment at Ecto-sp13_S_contig14578:377..3909+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14578.3511.1 ID=mRNA_Ecto-sp13_S_contig14578.3511.1|Name=mRNA_Ecto-sp13_S_contig14578.3511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3533bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14578:377..3909+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACTGGGGGAGGGGGCGCGGAGGGAGCCGCAGCTGGGAACACCGGCGA
GTCTAGGTTCCCGGGGGGAATCGTGAAGAGCTGGTGGCGGGCTAGGTACC
CGTACGAGGGGGCGGCGGGGTTCGGGCTCATGCGCGAGGAGATGCTCATC
AGGAGCAACGCTCGGCAGGTAGGGGTGGGCAGGGGGATGGGGGTGGGGCG
GGTTGCGCGGCGTAAGCCTCCATGCCCTTGTGCTGCTTGTGTTGAACACG
CGCTTTTTTGTCGAGAATGGCTCGGAAGGCTAGCAAGACGTAGAAAAGAG
GATTAGTTATTTCGTCGAAGAAGCGGGGGACGACGCTAAAAGGGCAATAG
CCCTTAGATCAAAAGGGCAATAGCCCTTAGATCAAAAGGGCAACAGCCCT
TAGATCAGCAGTTGTACTGTTTTTGTGGTAGTCATGTTTGTTTGTTGTCA
TTTATGTTGGTGTTCCTCGATCAAAGAGCGGAAGAGAAGACCGTGACCTT
TAGTCTGCCCCCGCACGGCTTCCCCCCTAGGAAACCCCATCCAGGCTTCG
CCTACGAGTACACGTTTTCTATGCATTCGACTCGTGATGGAAGGGTCAAT
AACTTGAGCTTCGCATTCGTTTGACCTACTTTTATTGTACTGTAGTGTCA
GCAGCAGCAACAACCACGTCGAACAACCCACGACAAAAAAAAAATGCAGA
TCTGGCTGGCAATGTCGGACGGCACCCTCCTAGACTGCTGCTACTGCAAG
GCGTACGGCGGAAGGAAAGGGAACGACCGCAGCAGCAGCAGCAGCACCGG
CGGTGAGGGTATGGGGGGCGGTTTGCCGGCGGCGGCGGGGAGATCGGGTA
GCGGCGGCAGTGACGATGGAGTCGGGGAGGGGGACGAGCGGAGGAGCACG
GGGTGCGTGCTCTTCTGCAACCCCAACGCGGGGTACTACGAGAGCATGGT
GTTGGCGGGCGAGGGTGGTCGCAATTGGTGAGAGAGAGAGCGGAAAGCGC
TTGTGCTTCATGGTAATGTGTCATATATATACACAGGTGAACAAAGGTTG
TTCTGCGTCGAAGATTGTTGATCCTGCGCGAATTCATGTCAAAGGCTTTC
ATGTTTGTTTTGGGGGAGGAGGGTTGGGGTTTTCAAAAAGTTCCCACACA
ACGACTGCCAATTTTTTTTTTTCGATCTTTGTCATCGCTGTCTCCAGCAG
AGACGGTAGGGCTTATGCTTTGAGGTTGACATGCTAGAACCAGACAGGAA
TGTCTTTCGTTTTTCTTCTGCGGTATTGTGTCTGTCGGCACTCTTCGTCC
ACCGCCGTTCATTCCGCCGTGGGGACTCAAAGAGCTCGGTTAAAGCGTTC
CGGAGGGGGGGCGGGTGGAAGAGTCGTCGTGATGCTGCTGGCGATTCTTC
TTGCATGCCATAAATTCCAATTTTTTCGCTTGGCATCTATCGAATCAACA
GGTTCTCCTTCAACACACACACTTATTTTTTTCGTTGTGTACTGCTGTAT
CGAATCGCACACCAGGGTCTCGTTCTACACCTCCGCAGGGTGCGACGTGT
TCCTCTTCAACTACCGGGGCTACGGGCGATCAGGTGGTAAGGCCTCCCCC
GCCAACATCAACAAGGACGTGAGAGAGGTTGCGACTTATCTCCGCGAGCA
CGTGGGGGTGACGCGGCTGGCGGTCCATGGGGAGAGCATAGGGGGGGTCG
CTGCGGCCAGCGTCGCAAGACACTCGCAGGTGATAAGAAGGAACTTTGCC
CCCACCGGTTTTGCGGACGTGATGATGCGCGGTCCCGGGAGAGAGCGGGA
GGTTGCATGTTTCCGGCAGCAGAGATCGACCAACAGCACCACCACCAACA
AAACAAAAACAGGAACGACACATCTTCTTCAGCAACGGCAACAACCACAT
CAACGACACCATCAACAGCAACGACAACAATAACAGTAACAACAGCAATA
CCACCACCACCACCACCAACAACAACAACAACAACAACACCATCAACACC
ATCAACAACAAAAACAACAACAACAACAACAACAACCACAACCACAACCA
CAACCACAACCACAACCATCACCACAACCACAACTATCACCAACCAATCG
ACGCCAGCTATGCATGCATAAGACAAACAACAACTCTTGACCCCCCATCG
GCATGTTACAGCAGGTGGACCTTCTCATCCTGGACCGCTCGTTTTCGAGC
CTCTCCGCCGTGGCCCAGAGGCTCATGGGGGGCTGGACCAAGTGGGCGAT
ATGGGGCTTCACAGGGTGGGACGCTCACGTGGCCGCTGACTACCTGGCAT
GTCGCTGCTACAAGGCGAGTTGCCGCTTAGAGGCGAGGGCTGGGGGCCCG
AGGTTACGCTTGTAGTTAGTGGGGGTGCTGGTGCTGTTGTTAAGTTTTTA
TTGGTGGATGCGGCAGTGGTGATGATTTTATGTGTTTGCTATTGCTGTTG
CTCTTACTTTATTTTGCTAGTTCGTGCAAGAGTTTCGGGTGTGGGTGTAT
GTAAACCAATTTGTTGTCAACACCTTGCCCCGCTAAGTCGCATCGCCACA
ACGCAACCATGCAGGTCCTGGCGTGCGATCCGGAGGACATGATCATCGCC
GACGCTTCCTCTACAAAAGCAGGCGTGTCCGTGATGGTGGAGCTCGGTGC
CGACGCATCGGCTCTGGACGTTTACCAACCTCCGAAGGTGCGTAGTCTAC
CAGCCTCCGAAAGTGCGTAGTCGTGGGACAAGATGATACTAGAGGCGTTT
TCAGGTGTGTGTGGGAAGAGGATTATCTTGATGGCAGCAGAGTGTGGGAG
GCAGCGGCGCACGGCGCGGTTTTGAAAGATGAAAATCGCTTGGCTTGATT
GAAGGATGGATGGGCCAAAGACAACAAACGCTCGATGCGCTATTTTCATT
TTGTTGTGCGTCTCTCTTACCTGCACCACAGCTGCATTGGCTGCCTAGCA
TGCGTCGTTGCTTTCGTCTCCGTCGCTGTTACTTTTGGTGCTACGATCGC
CTTCGTTCATCATGTTCGCTAATATTATATTTTCCGCCCCTTGTGCATGC
CGTACGGAAACACGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGACCCCCCCCCCCCCCGCCCCCCACACACCCCCAACCCCCCCCCCCCCC
CCCCCCCCGGTCTGTCAGGCCTACAAGGTTGCCGACCACTTGAGAACCTG
CCCCCCAGTGGAGCGCATGACCCTGCCCCTCTACCCACAAGAACGCCTCT
CGTCTGTGCAGATCGCTCACTTCGCGGCATGCCTAAGGTCCGTGTCTATG
TGCGCGTCTTGTGCAAGGCAGCGTGGGCTATCGTTCATACTATCCTCAGG
ATCGAAAGGCCGACTTGTGCGCTTGTGCGTTTTCGAATTGCAAGCGCCAT
CGGTGCGCAATTACTGTGTGTGTTTTTTTCTGTGCCTGAAGTGTGCAACC
TCTCTTTTTCTCTTTCGTGAAGTCCGTGGTGCGTGGGTCGTGTATTTCAT
GATTCTGTCTGCTTCAAGCGTGCAGGCTGCGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14578:377..3909+

>mRNA_Ecto-sp13_S_contig14578.3511.1 ID=mRNA_Ecto-sp13_S_contig14578.3511.1|Name=mRNA_Ecto-sp13_S_contig14578.3511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14578:377..3909+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACTGGGGGAGGGGGCGCGGAGGGAGCCGCAGCTGGGAACACCGGCGA
GTCTAGGTTCCCGGGGGGAATCGTGAAGAGCTGGTGGCGGGCTAGGTACC
CGTACGAGGGGGCGGCGGGGTTCGGGCTCATGCGCGAGGAGATGCTCATC
AGGAGCAACGCTCGGCAGGTCCTGGCGTGCGATCCGGAGGACATGATCAT
CGCCGACGCTTCCTCTACAAAAGCAGGCGTGTCCGTGATGGTGGAGCTCG
GTGCCGACGCATCGGCTCTGGACGTTTACCAACCTCCGAAGGCCTACAAG
GTTGCCGACCACTTGAGAACCTGCCCCCCAGTGGAGCGCATGACCCTGCC
CCTCTACCCACAAGAACGCCTCTCGTCTGTGCAGATCGCTCACTTCGCGG
CATGCCTAAGTCCGTGGTGCGTGGGTCGTGTATTTCATGATTCTGTCTGC
TTCAAGCGTGCAGGCTGCGCA
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