mRNA_Ecto-sp13_S_contig14574.3509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14574.3509.1
Unique NamemRNA_Ecto-sp13_S_contig14574.3509.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14574.3509.1 vs. uniprot
Match: D7FIG1_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG1_ECTSI)

HSP 1 Score: 692 bits (1787), Expect = 3.690e-240
Identity = 372/412 (90.29%), Postives = 378/412 (91.75%), Query Frame = 1 
Query:    1 ARECRRLRAFVALRNSEKAMAIFDKFFINLPRGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKRLHQQPGTGSEEEEAQRYGPGDIVGWPYLMPEPPARGRSPIAARTATSTTTPQKTAIGGGAEDRPNMPPEGNQQERKGRSRRNAKEWRCSITVTTPAQVLSVPLAALLSFLSERATKGLRSYIAHTHKQKLEGPSSSSHSGGLGDEESLDGESELGAFFSGHVGYDRNAPTLSSGGGTRKGQRKTGRMSSSVARLRPSTAPELIALKTAIPTEECESRRANTTASPGGVHALLEGISSRDNWPRXXXXXXXXXXXRVGLTDSIAYRISTAPQETHNLRRRLQSAPSSPWSSPHVMWGYPRVAERGIGGHGDEAEAGGRRCSCPMESCRVCSPLDR 1236
            ARECRRLRAFVALRNSEKAMAIFDKFFINLPRGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSK+LHQQPG G EEEEAQRYGPGDIVGWPYLMP PPARGRSPI ARTA  TTTPQKTAIGG AED+PN PPEGN+QERK RSRRNAKEW CSITVTTPAQVLSVPLAALLSFLSERA KGLR YIAHTHKQKLEGPSSSSHSGGLGDEESLDGESELG FFSGH GYDRNAPTL SGGGT K QRKTGRMS  VARLRPSTAPELIALKTAI +EECESRR N T  PGGVHAL+EGISSRDNWPRXXXXXXXXXXXRVGLTDSIA RISTAPQ  HNLRR LQSAPSS  SSP V+WGY RVAERGIGGHGDEAEA G RCSCPMESCRVCSPLDR
Sbjct:  348 ARECRRLRAFVALRNSEKAMAIFDKFFINLPRGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKQLHQQPGKGHEEEEAQRYGPGDIVGWPYLMPRPPARGRSPIVARTAAITTTPQKTAIGGSAEDKPNTPPEGNEQERKRRSRRNAKEWHCSITVTTPAQVLSVPLAALLSFLSERAMKGLRRYIAHTHKQKLEGPSSSSHSGGLGDEESLDGESELGEFFSGHGGYDRNAPTLFSGGGTWKDQRKTGRMSPPVARLRPSTAPELIALKTAIQSEECESRRPNITVLPGGVHALIEGISSRDNWPRXXXXXXXXXXXRVGLTDSIADRISTAPQGIHNLRRSLQSAPSSSSSSPPVIWGYARVAERGIGGHGDEAEARGGRCSCPMESCRVCSPLDR 759
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BLAST of mRNA_Ecto-sp13_S_contig14574.3509.1 vs. uniprot
Match: A0A6H5L5Z7_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z7_9PHAE)

HSP 1 Score: 441 bits (1134), Expect = 2.160e-143
Identity = 268/413 (64.89%), Postives = 283/413 (68.52%), Query Frame = 1 
Query:    1 ARECRRLRAFVALRNSEKAMAIFDKFFINLPRGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKRLHQQPGTGSEEEEAQRYGPGDIVGWPYLMPEPPARGRSPIAARTATSTTTPQKTAIGGGAEDRPNMPPEGNQQERKGRSRRNAKEWRCSITVTTPAQVLSVPLAALLSFLSERATKGLRSYIAHTHKQKLEGPSSSSHSGGLGDEESLDGESELGAFFSGHVGYDRNAPTLSSGGGTRKGQRKTGRMSSSVARLRPSTAPELIALKTAIPTEECESRRANTTASPGGVHALLEGISSRDNWPRXXXXXXXXXXXRVGLTDSIAYRISTAPQETHNLRRRLQSAPSSPWSSPH-VMWGYPRVAERGIGGHGDEAEAGGRRCSCPMESCRVCSPLDR 1236
            ARECRRLRAFVALRNSEKAMAIFDKFFINLP+GVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSK+ H+QPGTG EEEEAQRYGPGDIVGW                                           +G Q   +G  +R  K+ R                              +  YIA+THKQKL+GPSS SHSGGLGD+ESLDGESELG FFSGH G DRNAPTL SGGGT K QRKTG+MS  V RLR           T IPTEECESRR NT ASP GV ALL+GISSRDNWPRXXXXXXXXXXXRVGLTDS A  ISTAPQ TH LRR LQSAPSS       V+WGY RVA RGI GHGDEAEA G RCSCPMESCRVC+PLDR
Sbjct:  340 ARECRRLRAFVALRNSEKAMAIFDKFFINLPKGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKQFHRQPGTGKEEEEAQRYGPGDIVGWE------------------------------------------QGVQMAVEGVPKRRTKQPRLG---------------------------SVARYIAYTHKQKLQGPSSLSHSGGLGDDESLDGESELGEFFSGHGGCDRNAPTLFSGGGTWKDQRKTGKMSPPVTRLR-----------TVIPTEECESRRPNTAASPVGVQALLDGISSRDNWPRXXXXXXXXXXXRVGLTDSTADPISTAPQGTHKLRRSLQSAPSSXXXXXXPVIWGYARVAGRGIDGHGDEAEARGGRCSCPMESCRVCTPLDR 672
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14574.3509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIG1_ECTSI3.690e-24090.29Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5L5Z7_9PHAE2.160e-14364.89Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14574contigEcto-sp13_S_contig14574:181..4223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1239
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-28_000140.2
Cds size1239
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14574.3509.1prot_Ecto-sp13_S_contig14574.3509.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14574 181..4223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462777.8327506-CDS-Ecto-sp13_S_contig14574:180..6011681462777.8327506-CDS-Ecto-sp13_S_contig14574:180..601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14574 181..601 -
1681462777.8498526-CDS-Ecto-sp13_S_contig14574:945..11691681462777.8498526-CDS-Ecto-sp13_S_contig14574:945..1169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14574 946..1169 -
1681462777.8613994-CDS-Ecto-sp13_S_contig14574:1875..19831681462777.8613994-CDS-Ecto-sp13_S_contig14574:1875..1983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14574 1876..1983 -
1681462777.870163-CDS-Ecto-sp13_S_contig14574:2354..25321681462777.870163-CDS-Ecto-sp13_S_contig14574:2354..2532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14574 2355..2532 -
1681462777.8789222-CDS-Ecto-sp13_S_contig14574:3075..33081681462777.8789222-CDS-Ecto-sp13_S_contig14574:3075..3308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14574 3076..3308 -
1681462777.887935-CDS-Ecto-sp13_S_contig14574:4148..42231681462777.887935-CDS-Ecto-sp13_S_contig14574:4148..4223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14574 4149..4223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14574.3509.1

>prot_Ecto-sp13_S_contig14574.3509.1 ID=prot_Ecto-sp13_S_contig14574.3509.1|Name=mRNA_Ecto-sp13_S_contig14574.3509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=413bp
ARECRRLRAFVALRNSEKAMAIFDKFFINLPRGVCSEIASLATFRTIKMN
QKLAEDGDEVSTVFFVVRGECVSKSSKRLHQQPGTGSEEEEAQRYGPGDI
VGWPYLMPEPPARGRSPIAARTATSTTTPQKTAIGGGAEDRPNMPPEGNQ
QERKGRSRRNAKEWRCSITVTTPAQVLSVPLAALLSFLSERATKGLRSYI
AHTHKQKLEGPSSSSHSGGLGDEESLDGESELGAFFSGHVGYDRNAPTLS
SGGGTRKGQRKTGRMSSSVARLRPSTAPELIALKTAIPTEECESRRANTT
ASPGGVHALLEGISSRDNWPRPRPSTRTRWRWRVGLTDSIAYRISTAPQE
THNLRRRLQSAPSSPWSSPHVMWGYPRVAERGIGGHGDEAEAGGRRCSCP
MESCRVCSPLDR*
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mRNA from alignment at Ecto-sp13_S_contig14574:181..4223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14574.3509.1 ID=mRNA_Ecto-sp13_S_contig14574.3509.1|Name=mRNA_Ecto-sp13_S_contig14574.3509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4043bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14574:181..4223- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCAGGGAATGCCGCCGTTTGCGTGCCTTTGTGGCTCTTCGCAATAGCGA
GAAGGCCATGGCAATATTCGACAAGGTGACGAACCAAGGACATATTCTCG
TGGAGAACATCCCGTTTCTCTTTCTCTCTGAAGGATACGGTACATCAGGC
AGCCTTGCGACATCAACTTACTGTTTGGTCCATTAGGGGTTGCGACTAGA
GCACTTTGCTAGCCTTCCCTGTGTTACATCCAGGGCCAACACTGATGCTA
CCGTAGCGTCAGAAAGGCTTGCGAAGTAGGTGAGTGATTTCTGCTCCTTC
GCCTGAAAAGAGCAGCATACTTTTTGTTCAATTTCTGATCTTGCTTGACC
AACCCATCAGTTTTACTTCACTCGATCTGGTCCGCTGATCGACATATGTC
GCTGACGTGCTATGGCTTTGACGGGTAGGGTCCACCTACCAACTTCTTGC
TCATACAGGGAGGCATAGATTTTTCCTTCTTGCTTATACAGGGGGTATTT
CCTGGCGCTGTTCGTGTTGTTTAACTTCAGAATACAGCGTTCTCTCGCGC
CTTCCTTTTAGAACCTCATGCACTCCTTACGATGAATAACGCTCTAGCCA
ATGGCATTGCATTTTCTTTCTTGTCGTAGTACTCGCTCTTCAGTGGTAAC
TTGGCCAACGCCAATGAACTCGTTCACCATGGGCGGGTATTCCCTTCACC
ACCCAGTCTTCAGCCTGCAAGTCTACCCAACCAAGTGTTCATATTGTGAA
GGCGGACCTCGGCAAAGCTTTCAGTTTGGCAGGAGCGAACGAACCACTCT
CTCCCACGTTTGTCTGAAAATCCGCGTGCCTCTGTCCTTCTCTGCCTGCC
TCTGTCTCTCCATCTCGTTCTCTCTCCCCGTTTTTTCTATATTTTCCCTC
CTGTGCCGGCGGTAGTTTTTCATAAACCTCCCGAGAGGTGTCTGCTCTGA
GATCGCCTCTCTCGCCACATTTCGCACGATCAAGATGAATCAAAAGCTAG
CGGAAGATGGGGATGAGGTCTCAACTGTCTTCTTTGTCGTTCGAGGCGAG
TGCGTCTCGAAGTCTAGTAAACGGCTCCACCAGCAGCCAGGCACGGGCAG
CGAGGAAGAGGAGGCCCAGCGGTACGGCCCCGGGGACATTGTAGGCTGGT
GAGGGTCGTGTTTGGCGTATAGACTAGGCTTATGAAGTTTGCAATAGACG
ATTGGATAGACCGTCATCTCTTGAACGCCTCGTCTCTAGAAGATGAAACC
CGTTAGGGTTGGGTTAGATTTGGTCTCCTCGTCTAGCTTTCGCCAATTTT
CTTGCTGTTTGAATATTTTGATTGCTACAGGATATGTTCTTGGGGTTGAC
AATGGTGGAAAAGATAGCGAAGTGGCCCCAGCAGGGCGCAAACCAATGAA
ATCGTTCCACAGTGAAACGTTAAGACTTGTTAATGTCCCGGACCGCAAGT
GACTCGTTGCCATTGACATACGTAGCAGGTCATTCTGTGTGAAAAAAAAT
GCGTAAGGGTGTAAGGCCGTGCTGATGGCCGTCGAAGGTAGACCCTGTCG
AAACTGTCAGGAGGGGTAGGGGAGTAGCGCTGAATCGAATTTTCGAGACT
CTCCCCAACTTCAAAATCCTTCCATCGTACCTGGCGGACGGCAAACGTTT
GTGTTTTGATTTTCCTTTCTATTGATGCGCTTGTTCGTCAGGCCATATTT
GATGCCCGAACCGCCAGCACGTGGGCGTAGTCCAATTGCCGCGAGAACGG
CGACCAGTACGACGACACCACAAAAGACAGCGATCGGTGGGGGTGCCGAG
GATAGACCGAACATGCCACCGGAAGGAAATCAACAGGAACGGAAGGGGAG
GTCTCGTCGCAACGCCAAGGTGCCCGAAAGCCGTCCTTGCAAACCCTGCC
ATCGGGTTATTTCGTGCCTCTCTGTCACCAACGAAACGCCCGGTGCCTAC
ACGCGTTCGATGCATTCATGTACGCCACGTCATGACCCAGGCGCATACCA
AGGCACGTTAGGCGTGCGAAAACGACGAATCCAAAAGCCCCGCCTCGGCT
CCGTCAAGTATGTATGCGAACGCCTTTACTACGTCACTTGCGTACGCGAA
ATGGGCATAAGCACGGATGCAAGTCTAATCGAGTACTACCAACATAATAG
TCCCGTCTTTTAACCGAACGGTGAATGAATGTCTCCTTTGCAAGCCGGAG
GTGACTGATTCTCGGCATGGTTGCATGCCTACGTGTGTAGGAGTGGCGAT
GTTCGATCACAGTAACGACCCCTGCACAAGTGCTTTCGGTTCCGTTGGCC
GCCCTCCTCAGCTTTCTATCGGAGAGGGCCACGAAGGGGTTAAGGTCAGT
GGGAAAGGAAACCGTTTCTGTTGGCGGGCTTGAACCATTGTCGAGCACTT
CCATGTCAATTTCGTAAGCGCCAATTTCGATGCTTGTCTAATTGGTTGGT
CCCAAAGTAATCGCAGACTTTGATGCGTTACCGAGGGCATATGATAAGAA
GGAAGCGCTGCGAGCTCGGTTACAGAACAGTGGCTCAATGGTGCAGTTGC
CTAGCTCGAATCCTTGGCTCTACGATGTGCGCTTGAATCTCCCCAAAGCG
AGCAAACTCACAAATTTGAACTGAAAAGCGCATAGGCGTCCACACAACAA
AAGAGGGATTGATACACCCCTCTCGTACACAATGTTGAACGCAAGCACAG
CAGGAGAAAATGTGACATAACCCTCCTCGGTAATCCCAGGCTGGTGAGCT
AAGCTTCAAACTAGAATCTGCGAGGGTTATTTCGCGTATAAGGATTTTTA
TCGACAACCGGACTTGCCCAAAACTCACAAGTTGAACGTTTCGGACGGTG
CTCGTGCAACTGATGGACGGGTGTGTGTCTACCTGTTGCTCTGACAAGGT
ACCAGCAAGACCTTTATCATACTACTCGAAGGGACAATATACCTTTGGCT
CAGGCGTCAACCTCTCACCCCTACAAACCACCGCGCTGCCCTCGCGCCTC
TTAGTCCACCATTCCCGGGTATGTTCCTGAAATCTGTCCACGGGGTACAG
GAAGTACATTGCGCACACGCACAAGCAGAAATTGGAGGGACCTTCCTCTT
CATCGCATTCGGGCGGTCTGGGTGACGAGGAGAGTTTAGATGGAGAGAGT
GAATTGGGGGCATTTTTCAGCGGTCACGTGGGATACGACCGAAACGCCCC
AACGCTGTCCTCTGGTGGCGGCACACGAAAAGGTCAAAGAAAAACAGGGA
GGATGTCTTCTTCCGTGGCCCGACTAAGGTACTGAAATCAACAACGGGAG
AATGCCCGTTCTTCTGTCTTTTCCCTCCGTGTCCCAAAATGGCACATGGT
GCTTTAGCTTTCCTCCTGCGTGTTGGTGTACGGAGAGGCCCAGACCCCTC
CGGATACCTAGTAAGAAATCTTCCAGAGCTCGTTGCATCTACTAGAATTA
TGTTTCACTATTTGCTACCACACGCCAGAATGTCCACTCTTCCACACCCG
GCACACGTTCACCGCTTGTTTTGCCTCTCTCGGTTCGCATGGCCACAACT
CACGGGCAGTTGGCCGTAGCTCTATCATCGCAATCAACCAAACCTAGTCT
CCTCCTCTTCGCCCCTGCAAAGACCATCAACGGCACCCGAACTGATCGCC
TTGAAGACGGCCATCCCAACCGAAGAGTGCGAAAGTCGGCGCGCGAACAC
AACAGCCTCGCCCGGAGGCGTACATGCTCTACTTGAGGGGATATCCAGCC
GAGACAACTGGCCCCGGCCGCGACCGAGCACCCGCACGCGCTGGCGTTGG
CGCGTGGGCTTGACGGATTCTATCGCATACCGAATCTCAACCGCCCCGCA
GGAGACCCACAACTTGAGACGTAGACTGCAGTCCGCGCCGAGTTCGCCGT
GGTCGTCGCCGCATGTGATGTGGGGCTATCCTAGAGTAGCGGAGCGAGGG
ATCGGCGGGCACGGGGACGAGGCAGAAGCAGGCGGCAGGCGCTGCTCCTG
CCCGATGGAAAGCTGCCGCGTTTGCTCGCCGTTGGACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14574:181..4223-

>mRNA_Ecto-sp13_S_contig14574.3509.1 ID=mRNA_Ecto-sp13_S_contig14574.3509.1|Name=mRNA_Ecto-sp13_S_contig14574.3509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14574:181..4223- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCAGGGAATGCCGCCGTTTGCGTGCCTTTGTGGCTCTTCGCAATAGCGA
GAAGGCCATGGCAATATTCGACAAGTTTTTCATAAACCTCCCGAGAGGTG
TCTGCTCTGAGATCGCCTCTCTCGCCACATTTCGCACGATCAAGATGAAT
CAAAAGCTAGCGGAAGATGGGGATGAGGTCTCAACTGTCTTCTTTGTCGT
TCGAGGCGAGTGCGTCTCGAAGTCTAGTAAACGGCTCCACCAGCAGCCAG
GCACGGGCAGCGAGGAAGAGGAGGCCCAGCGGTACGGCCCCGGGGACATT
GTAGGCTGGCCATATTTGATGCCCGAACCGCCAGCACGTGGGCGTAGTCC
AATTGCCGCGAGAACGGCGACCAGTACGACGACACCACAAAAGACAGCGA
TCGGTGGGGGTGCCGAGGATAGACCGAACATGCCACCGGAAGGAAATCAA
CAGGAACGGAAGGGGAGGTCTCGTCGCAACGCCAAGGAGTGGCGATGTTC
GATCACAGTAACGACCCCTGCACAAGTGCTTTCGGTTCCGTTGGCCGCCC
TCCTCAGCTTTCTATCGGAGAGGGCCACGAAGGGGTTAAGGTCATACATT
GCGCACACGCACAAGCAGAAATTGGAGGGACCTTCCTCTTCATCGCATTC
GGGCGGTCTGGGTGACGAGGAGAGTTTAGATGGAGAGAGTGAATTGGGGG
CATTTTTCAGCGGTCACGTGGGATACGACCGAAACGCCCCAACGCTGTCC
TCTGGTGGCGGCACACGAAAAGGTCAAAGAAAAACAGGGAGGATGTCTTC
TTCCGTGGCCCGACTAAGACCATCAACGGCACCCGAACTGATCGCCTTGA
AGACGGCCATCCCAACCGAAGAGTGCGAAAGTCGGCGCGCGAACACAACA
GCCTCGCCCGGAGGCGTACATGCTCTACTTGAGGGGATATCCAGCCGAGA
CAACTGGCCCCGGCCGCGACCGAGCACCCGCACGCGCTGGCGTTGGCGCG
TGGGCTTGACGGATTCTATCGCATACCGAATCTCAACCGCCCCGCAGGAG
ACCCACAACTTGAGACGTAGACTGCAGTCCGCGCCGAGTTCGCCGTGGTC
GTCGCCGCATGTGATGTGGGGCTATCCTAGAGTAGCGGAGCGAGGGATCG
GCGGGCACGGGGACGAGGCAGAAGCAGGCGGCAGGCGCTGCTCCTGCCCG
ATGGAAAGCTGCCGCGTTTGCTCGCCGTTGGACAGGTGA
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