mRNA_Ecto-sp13_S_contig14571.3508.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14571.3508.1
Unique NamemRNA_Ecto-sp13_S_contig14571.3508.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: A0A6H5JZH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH5_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 7.430e-50
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENVG 267
            DIALFLPTMV SPDGSSGGPVFLAFHVNCPNRYLSEESINNARE LG SPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENVG
Sbjct: 1296 DIALFLPTMVGSPDGSSGGPVFLAFHVNCPNRYLSEESINNARETLGASPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENVG 1384
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: D7FIX1_ECTSI (Autophagy-related protein 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX1_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.040e-40
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:   34 SPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENVG 267
            SP+GSSGGPV L FHVN PNRYLSE+SINNAREALG SPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENVG
Sbjct: 1139 SPEGSSGGPVVLGFHVNWPNRYLSEDSINNAREALGASPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENVG 1216
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: A0A6G0WZC7_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZC7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.040e-18
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLT 252
            D+ALFLPT   +P+ ++   ++LAFH+ CPNR+LS+ESI    +     P YILGRI+ +++ VASE  NPY +   T +YVLT
Sbjct:  742 DLALFLPTF--APNDTNAAKIYLAFHLGCPNRFLSDESITTFYQTQNRYPEYILGRIVFIDERVASERDNPYRLITGTTFYVLT 823
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: A0A397E0U3_9STRA (ATG11 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E0U3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.410e-18
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLT 252
            D+ALFLPT   +P  ++   ++LAFH+ CPNR+LS+ESI    +     P YILGRI+ +++ VAS+  NPY +   T +YVLT
Sbjct:  161 DLALFLPTF--APTDAAAAKIYLAFHLGCPNRFLSDESITTFYQMHNRYPEYILGRIVFIDERVASDRDNPYRLIAGTTFYVLT 242
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: A0A1V9Y798_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y798_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.800e-18
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLT 252
            D+ALFLPT   +P   S   V+LAFH+ CPNR+LS+ESI+   +     P YILGRI+ +++ VA+E  NPY +   T +YVLT
Sbjct: 1009 DLALFLPTF--APSDVSAPKVYLAFHLGCPNRFLSDESISTFYQTQNQYPEYILGRIVFIDERVATERDNPYRLILGTTFYVLT 1090
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: A0A485LS47_9STRA (Aste57867_25053 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS47_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.800e-17
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLT 252
            D+ALFLPT   +P+  +   ++LAFH+ CPNR+LS+ESI    +     P YILGRI+ +++ VA+E  NPY +   T +YVLT
Sbjct:  760 DLALFLPTF--APNDVNAAKIYLAFHLGCPNRFLSDESITTFYQTQNRYPEYILGRIVYIDERVATERDNPYRLITGTTFYVLT 841
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: W4H826_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H826_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.800e-17
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLT 252
            D+ALFLPT   +P  ++   ++LAFH+ CPNR+LS+ESI    +     P YILGRI+ +++ VAS+  NPY +   T +YVLT
Sbjct:  760 DLALFLPTF--APTDAAAAKIYLAFHLGCPNRFLSDESITTFYQMHNRYPEYILGRIVFIDERVASDRDNPYRLIAGTTFYVLT 841
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: A0A067CYA5_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYA5_SAPPC)

HSP 1 Score: 85.5 bits (210), Expect = 1.800e-17
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLT 252
            D+ALFLPT   +P  +S   ++LAFH+ CPNR+LS+ESI    +A    P YILGRI+ +++  A+E  NPY +   T +YVLT
Sbjct:  769 DLALFLPTF--APSDASAAKIYLAFHLGCPNRFLSDESIAMFHQAQNRYPEYILGRIVFIDEREATERDNPYRLILGTTFYVLT 850
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: F0W219_9STRA (Uncharacterized protein AlNc14C8G1093 n=4 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W219_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.610e-17
Identity = 39/88 (44.32%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENV 264
            D+ALFLPT  + P   S   V+LAFH+ CP+R+LSEESI++   +    P Y++GRI+L+++ +ASE  NPY +   T +Y+LT  ++
Sbjct:  851 DLALFLPT--SGPTTESQRRVYLAFHLGCPHRFLSEESISSFSTSGSRYPDYVIGRIVLIDEQIASESSNPYGLVIGTTFYILTVASL 936
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BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Match: A0A1V9Y4Q5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4Q5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.590e-16
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 DIALFLPTMVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLT 252
            D+ALFLPT   +P  ++   ++LAFH+ CPNR+LS+ESI    +     P YILGRI+ +++  A+E  NPY +   T +YVLT
Sbjct:  755 DLALFLPTF--APSDAAASKIYLAFHLGCPNRFLSDESIATFYQTQNRYPEYILGRIVFIDEREATERDNPYRLILGTTFYVLT 836
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14571.3508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZH5_9PHAE7.430e-5096.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX1_ECTSI7.040e-4092.31Autophagy-related protein 11 n=1 Tax=Ectocarpus si... [more]
A0A6G0WZC7_9STRA2.040e-1847.62Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A397E0U3_9STRA2.410e-1846.43ATG11 domain-containing protein (Fragment) n=2 Tax... [more]
A0A1V9Y798_9STRA9.800e-1848.81Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485LS47_9STRA1.800e-1746.43Aste57867_25053 protein n=1 Tax=Aphanomyces stella... [more]
W4H826_9STRA1.800e-1746.43Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A067CYA5_SAPPC1.800e-1747.62Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
F0W219_9STRA4.610e-1744.32Uncharacterized protein AlNc14C8G1093 n=4 Tax=Albu... [more]
A0A1V9Y4Q5_9STRA1.590e-1645.24Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14571contigEcto-sp13_S_contig14571:2619..3310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score75.1
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog653948.CCA15096
Model size270
KEGG koko:K08330
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04139,map04136,map04138,map04139
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0001932,GO:0001934,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005911,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009506,GO:0009893,GO:0009987,GO:0010150,GO:0010562,GO:0010604,GO:0015980,GO:0016020,GO:0016043,GO:0016052,GO:0016236,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0022411,GO:0022607,GO:0030054,GO:0030242,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032947,GO:0032991,GO:0034045,GO:0042325,GO:0042327,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0045937,GO:0046983,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0055044,GO:0055114,GO:0060255,GO:0061695,GO:0061709,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0090693,GO:0098805,GO:0099402,GO:1901575,GO:1902494,GO:1902554,GO:1902911,GO:1903008,GO:1905037,GO:1990234,GO:1990316
Exons2
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGs28MXS@1,2QUG9@2759
Ec32 ortholog descriptionAutophagy-related protein 11
Ec32 orthologEc-07_007840.1
Cds size246
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462777.7447581-UTR-Ecto-sp13_S_contig14571:2618..26421681462777.7447581-UTR-Ecto-sp13_S_contig14571:2618..2642Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14571 2619..2642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462777.7684875-CDS-Ecto-sp13_S_contig14571:2642..28191681462777.7684875-CDS-Ecto-sp13_S_contig14571:2642..2819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14571 2643..2819 +
1681462777.7886634-CDS-Ecto-sp13_S_contig14571:3241..33101681462777.7886634-CDS-Ecto-sp13_S_contig14571:3241..3310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14571 3242..3310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14571.3508.1prot_Ecto-sp13_S_contig14571.3508.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14571 2643..3310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14571.3508.1

>prot_Ecto-sp13_S_contig14571.3508.1 ID=prot_Ecto-sp13_S_contig14571.3508.1|Name=mRNA_Ecto-sp13_S_contig14571.3508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MVASPDGSSGGPVFLAFHVNCPNRYLSEESINNAREALGVSPAYILGRII
LVEQHVASEEPNPYNVAPNTVYYVLTAENVG*
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mRNA from alignment at Ecto-sp13_S_contig14571:2619..3310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14571.3508.1 ID=mRNA_Ecto-sp13_S_contig14571.3508.1|Name=mRNA_Ecto-sp13_S_contig14571.3508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14571:2619..3310+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACATCGCGCTATTCCTGCCGACTATGGTGGCATCTCCAGACGGCTCGTC
GGGCGGCCCGGTGTTCCTGGCGTTTCACGTGAACTGCCCGAACCGGTACC
TGTCCGAGGAAAGCATCAACAATGCCCGCGAGGCGTTGGGTGTTTCTCCG
GCGTACATATTGGGCCGCATCATCCTGGTGGAACAGCACGTGGCCTCTGA
GGTGAGTCGAGTCGCCATGGAAGGAGGGGGCGTACTCACGTAAATGCATG
CCGTAGTCATTAGGTTATTGACGTCGCATGCCGAGACGGAGCGTTTGGCT
TACGATTTCGTGGAATTTCACGGGTGGTTGGTAACCTTGCGCTGTCTGTC
GCCCAAATTATACAAGCATTAGTTTTAAAGAAAGGGTCAAGAGGTAGTGC
TTCCCCTAAATATGCGGCTGGAGCTGATTCTGTCCTCAAGGTTTGGTGAT
GGTGAGGTCGATGCGCTAGGCTCGCGGCGACATGTGACTCTCTCCTGTCG
AGCATAGCTCACCGGATGCGGAGATCCCAAAGCCAACGAGATGCCTGTCT
GATCCCTCTTGCGCTTTCCCTTCTTGCCGCGGTGTGTGCGTCCCTTCCTG
CGTGTGTGTGTGCCACGGAACAGGAGCCCAACCCGTACAACGTTGCTCCG
AATACGGTGTACTACGTCCTCACCGCAGAAAACGTCGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14571:2619..3310+

>mRNA_Ecto-sp13_S_contig14571.3508.1 ID=mRNA_Ecto-sp13_S_contig14571.3508.1|Name=mRNA_Ecto-sp13_S_contig14571.3508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14571:2619..3310+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCATCTCCAGACGGCTCGTCGGGCGGCCCGGTGTTCCTGGCGTT
TCACGTGAACTGCCCGAACCGGTACCTGTCCGAGGAAAGCATCAACAATG
CCCGCGAGGCGTTGGGTGTTTCTCCGGCGTACATATTGGGCCGCATCATC
CTGGTGGAACAGCACGTGGCCTCTGAGGAGCCCAACCCGTACAACGTTGC
TCCGAATACGGTGTACTACGTCCTCACCGCAGAAAACGTCGGCTAG
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