mRNA_Ecto-sp13_S_contig14541.3493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14541.3493.1
Unique NamemRNA_Ecto-sp13_S_contig14541.3493.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14541.3493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14541contigEcto-sp13_S_contig14541:751..4055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size612
Hectar predicted targeting categoryother localisation
Exons4
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.375411-CDS-Ecto-sp13_S_contig14541:750..9001681462776.375411-CDS-Ecto-sp13_S_contig14541:750..900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14541 751..900 +
1681462776.384779-CDS-Ecto-sp13_S_contig14541:2322..24741681462776.384779-CDS-Ecto-sp13_S_contig14541:2322..2474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14541 2323..2474 +
1681462776.3975136-CDS-Ecto-sp13_S_contig14541:2955..30461681462776.3975136-CDS-Ecto-sp13_S_contig14541:2955..3046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14541 2956..3046 +
1681462776.4088948-CDS-Ecto-sp13_S_contig14541:3836..40551681462776.4088948-CDS-Ecto-sp13_S_contig14541:3836..4055Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14541 3837..4055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14541.3493.1prot_Ecto-sp13_S_contig14541.3493.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14541 751..4055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14541.3493.1

>prot_Ecto-sp13_S_contig14541.3493.1 ID=prot_Ecto-sp13_S_contig14541.3493.1|Name=mRNA_Ecto-sp13_S_contig14541.3493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
QVLQWATENGAPWNGWACRGAALGGHLDVLKWLRRNGCSWDADTCAGAAQ
GGHLAILRYARSHGCPWDPRTCSSAALGGHLDVLTWARSNGCRWNESTTC
RAAEGGHLHILKWAAAHGCPMSCDICSKAAKGGHLDVIMWAMQHGSEWDS
NTCLEAALGGHLDVLKWCRAHGAPWHVDTCSAAAGGGHLAVLQWCRHNGA
PAW*
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mRNA from alignment at Ecto-sp13_S_contig14541:751..4055+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14541.3493.1 ID=mRNA_Ecto-sp13_S_contig14541.3493.1|Name=mRNA_Ecto-sp13_S_contig14541.3493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3305bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14541:751..4055+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCTTCAATGGGCCACAGAAAACGGGGCCCCATGGAATGGCTGGGC
CTGTCGAGGGGCTGCCCTGGGTGGCCACCTCGACGTGCTTAAATGGCTGC
GACGGAATGGCTGCAGCTGGGATGCAGACACTTGCGCCGGCGCCGCACAG
GTATAACTTCGGAATATTCCACCCCCCCCGGACCGATTTTGATTTGCCAA
AGCTCGATTTCTGCACGAAGATGACGCAAGAATCAACTGATAATTTTCAA
GTCCAGCAGTATCGGCGAGAGACGGTTCCAACGCCGCCGTTTTTTCGGCA
CAACCTCTGGCTGAGTCTGCTGTAGAGTACTCCAGCTTGAAAATCGCTCC
AGGCAGTGTGGTATACATGCAACATGTAACTTGTAGCGTATGGTTCAGCA
GTCGTCCCTGACTCTGAGGACCCTCGTGATTTTTCTTTAAGAGAAATTCC
CGTAGAGCGGGGACGTGCCCTCAAAGTGCTACCCCCGTGTTGCTTTTCAT
TCTGCGGGGCACCATGATTCTGAAATGCATGGGTTTCTTGAAGATGGCGA
TGACTACTGTCGTGTACCCAAAGGAGAACGACCAATGCTTTTTTGTGTGC
CACGGGTTCATTCGCCAGATTGTCTACTGTTTTTGTTGTATATAACATAA
CAGATCCACCTCTATCCATGAGGTGAATGAGGGTCTGGGATGTTTTGTTT
TATGAGACGATGGTCATGGTTGGCAGCAGGGCCGATCGCCCTTGACAGTC
ACGAGTATCCTTTTCTTGTTTTTTTCACTCGGGGTTGGGTTCTTCAACGC
GCCGTGCAAACGGATGTTCCATCTCTTCTTAGTGGCAACTGATGGAAGAC
TACGTACGCTCCTTTGTTCTGTGATGCCACGCCTCGCTGCGGTTGTTACT
GTTGTTGTTGTTTGGTTGTTGTCGTCTTAGTACAGGAACATGTCCCGATC
TCTGCCGAGTGGCACCTCTAACAACCGTACTGGTCCAACGGACGCGGGCC
GACAGCTTCAGTGGCCATAACTACCCAAAAAGGGTGTGGCATGAAAATCA
ATGAGAGTACATGCCCAAAAAATATCGAAACAAACGCGATACAGCAGCAG
TAGGAAAAGACAGAAAAACCAAGGCCCCAGACGCGCAGACGCCGGCACCT
TCGGCGTATTGTTAGCACGCCTTTAGCATATTGATGTTGATGTCGGGTGT
CACTGGTTGGCAAAGCCATGGAAGCGATACGCTGTACCTCGCGGCAGTCA
TTGCCCTCGAGAGGACAAACTTGTTGCTTTGTTTGCACATGTATCTTCCT
GTATCAGCACGGTCGAAAGTGAACCAGAGTCGTGCCGCTCGGGCCGCTTC
CGAAAATGGTACCCGCTGCTTGTACCTCCATGTCTTCCGAGAGGTCACGT
TTCGTCTCCCCGGCAAGGCTTGCGGAAGCCTGCTTGCCCCGGGCAGGATG
CATGGCGCAGCGTCTATTGCTGCCAAATGGGCATACAGAAAGTTCTGCTT
CCATTTGCATTCGTCGCTGCCAACCGTAACGACGATCTCTCCTTCTTGGT
TGTGCCGTCGCGACGAATAAAGGGAGGTCACCTGGCCATCTTGCGGTACG
CCCGTTCCCATGGATGTCCGTGGGACCCAAGGACCTGCTCGTCCGCGGCG
CTGGGGGGGCACCTGGACGTCCTGACATGGGCGCGTTCCAACGGTTGCCG
CTGGAATGAATCCACCACCTGCAGGTAAGAGATGCGTACAATACACATGA
GGGGTTAGGGGCGGATGGTTTTCCGCACAACGAACGCCGCAGGAGAAGCG
AGCTACCTCCCCAAGAACAGTGGCTGGGAATATATAGCGAAGAGAGTGGT
GAATGCAAGGGGGATGATGAAACCAAAACCAGCAAGAACGTGCGCATGGT
TGGTAAGAGACGTGCAGTCTTGCTGCTACACTGTTGTTGTCTTTAGTCCG
GAGAGCGGTTTGGTCTCCCCCATGACGCCCCCTCACGCGGTCCCGGATCG
TGGCCTTCAAAAACGCTTTCTGCTTTCGGCCGCGCTGATACAGACGTGTT
AAAATTGGTCAGCCGGCTGGCGCGGTCGATGCTTCTATTGCAGACACACG
CGCATGGCTGCAAGGTTGTGCTTTAGAGCCCGTCCCCACCTCGAGTTCTT
CGCCGCTCCCACGTCCGACGCGAACGACATTCTTTGAAACTCACCCTACA
TGCAGGGCGGCAGAAGGGGGCCACCTCCATATCTTGAAGTGGGCGGCTGC
GCATGGCTGCCCGATGTCGTGCGATATTTGCAGCAAGGCAGCGAAGGTAG
GCATGTGTAGGATACTTTGGGTTGTACAGCTTTCGGCGGTGGTGGTAGTG
TGTGGCAGGTACAGCAGTACTGCTGCTGTACCCCTCTTTTTTTGTCTTCT
CGTTTAGTCGTCGCTCGTAGTATAGATGTTGTCCTACGATCTTGCTTGTC
TCCATCCAAGCGAAGTGGAGCCCTTATCAGGGGGGCACGCAGACAAGAAT
GAAATTCATCCACGGGAAGAGAAATGAGACACAGAGCGAGTGCCCATTCA
TATTGGTAGAACAGGGTCAGGCGTTCGTTCGTTTTATTTAAGTGATCCCT
CCAAAGTGGGCTATCAGAGCCCAATTTCATCAGGGCCGATGTAAGATCAA
ATCAGTGCAGAAACAAAGGCAGGGAGCAGGACGAACCCACATCTAGCTTC
CAGCTGCTCCCACGGTGTGAAGTTTCCCAAGCTCATTAGCTCACACAGCT
CACATGGCTGTCTCACGTGTTTTTGGCTCGAAGAGCTCGACGGACCTCAA
CGAATCAAAAAGAAAAAACTACAACCTGTTTGGTACAGTCTTACCTTCCC
ACGAGCCGCGCTCCCACAGGCCCGAGCTGATATAACAGCACCAGGCGTTG
GTGGCTTTTACCTAGCATACGTCCAACACTGAATTCGGCGAGCTACATGT
AGTGCGCATCATCCAACCCGGCATTGCTCTACGTCCCACGGCAGTCGTGG
AATGTTTTGTGCAAGACATTATCTCTGCCTACGTCTCCGCAATCCGGTTG
CCATACCTTGTGTATATCTGCCTACTGCTATACAAGGGGGGACACCTGGA
CGTGATCATGTGGGCCATGCAGCACGGGTCGGAGTGGGACAGTAACACGT
GCCTGGAAGCGGCGCTGGGGGGGCATCTCGACGTGCTGAAGTGGTGCAGA
GCTCACGGAGCCCCCTGGCACGTCGACACGTGTTCCGCCGCAGCCGGTGG
AGGCCACCTCGCTGTCCTGCAGTGGTGCCGACACAACGGGGCACCCGCAT
GGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14541:751..4055+

>mRNA_Ecto-sp13_S_contig14541.3493.1 ID=mRNA_Ecto-sp13_S_contig14541.3493.1|Name=mRNA_Ecto-sp13_S_contig14541.3493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14541:751..4055+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCTTCAATGGGCCACAGAAAACGGGGCCCCATGGAATGGCTGGGC
CTGTCGAGGGGCTGCCCTGGGTGGCCACCTCGACGTGCTTAAATGGCTGC
GACGGAATGGCTGCAGCTGGGATGCAGACACTTGCGCCGGCGCCGCACAG
GGAGGTCACCTGGCCATCTTGCGGTACGCCCGTTCCCATGGATGTCCGTG
GGACCCAAGGACCTGCTCGTCCGCGGCGCTGGGGGGGCACCTGGACGTCC
TGACATGGGCGCGTTCCAACGGTTGCCGCTGGAATGAATCCACCACCTGC
AGGGCGGCAGAAGGGGGCCACCTCCATATCTTGAAGTGGGCGGCTGCGCA
TGGCTGCCCGATGTCGTGCGATATTTGCAGCAAGGCAGCGAAGGGGGGAC
ACCTGGACGTGATCATGTGGGCCATGCAGCACGGGTCGGAGTGGGACAGT
AACACGTGCCTGGAAGCGGCGCTGGGGGGGCATCTCGACGTGCTGAAGTG
GTGCAGAGCTCACGGAGCCCCCTGGCACGTCGACACGTGTTCCGCCGCAG
CCGGTGGAGGCCACCTCGCTGTCCTGCAGTGGTGCCGACACAACGGGGCA
CCCGCATGGTGA
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