mRNA_Ecto-sp13_S_contig1454.3489.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1454.3489.1
Unique NamemRNA_Ecto-sp13_S_contig1454.3489.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1454.3489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1454contigEcto-sp13_S_contig1454:2130..2735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size606
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.1617084-UTR-Ecto-sp13_S_contig1454:2129..21431681462776.1617084-UTR-Ecto-sp13_S_contig1454:2129..2143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1454 2130..2143 +
1681462776.1894531-UTR-Ecto-sp13_S_contig1454:2530..27351681462776.1894531-UTR-Ecto-sp13_S_contig1454:2530..2735Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1454 2531..2735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.1779573-CDS-Ecto-sp13_S_contig1454:2143..25301681462776.1779573-CDS-Ecto-sp13_S_contig1454:2143..2530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1454 2144..2530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1454.3489.1prot_Ecto-sp13_S_contig1454.3489.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1454 2144..2530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1454.3489.1

>prot_Ecto-sp13_S_contig1454.3489.1 ID=prot_Ecto-sp13_S_contig1454.3489.1|Name=mRNA_Ecto-sp13_S_contig1454.3489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
MRVEDGYCRPALAVVLLPRCTGTDEGAPLLQVHRRLTRMGILRSREYCEV
CVNANSFPFGIYVVANANNQLRNAGMLSFKVDCSICLFVIRTDVAGNVLF
MCRANRGFNTRQYANFSERFFCCFRDDL*
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mRNA from alignment at Ecto-sp13_S_contig1454:2130..2735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1454.3489.1 ID=mRNA_Ecto-sp13_S_contig1454.3489.1|Name=mRNA_Ecto-sp13_S_contig1454.3489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1454:2130..2735+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCGTCGGAGCACATGAGGGTTGAAGATGGATATTGTAGACCGGCCCTT
GCCGTTGTTCTTTTGCCGCGCTGCACTGGCACTGACGAGGGTGCCCCTCT
CCTACAGGTACATCGTAGGCTTACCCGAATGGGAATATTGCGAAGTAGGG
AATACTGCGAAGTATGTGTGAACGCCAACAGTTTTCCATTCGGGATCTAC
GTGGTGGCGAACGCCAACAACCAACTACGGAACGCCGGCATGCTTAGTTT
TAAAGTCGACTGCAGCATCTGCTTGTTCGTTATTCGGACGGATGTTGCCG
GCAATGTATTGTTCATGTGTCGGGCCAACCGAGGATTCAACACCCGCCAA
TATGCGAATTTTTCTGAACGATTTTTCTGTTGTTTTCGCGATGATCTTTA
GCAGAGTCCAAGACCGAGGTTTTGACTACCCTCCTAGTACAATATCACCT
TCGCTTACGGAGATCAGAGGGTGGCTGAGTCAAAAGACGAGAATCGTCCG
GTTGGAAGCCTTCTGCTGAAAATGTTTGAGAGTGGTTTTCGCGGCGGGTT
TGGTGACGTTTCGGACACCCGACTAGGACCTTTTGTTTGAAATTCCGATG
AATGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1454:2130..2735+

>mRNA_Ecto-sp13_S_contig1454.3489.1 ID=mRNA_Ecto-sp13_S_contig1454.3489.1|Name=mRNA_Ecto-sp13_S_contig1454.3489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1454:2130..2735+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGTTGAAGATGGATATTGTAGACCGGCCCTTGCCGTTGTTCTTTT
GCCGCGCTGCACTGGCACTGACGAGGGTGCCCCTCTCCTACAGGTACATC
GTAGGCTTACCCGAATGGGAATATTGCGAAGTAGGGAATACTGCGAAGTA
TGTGTGAACGCCAACAGTTTTCCATTCGGGATCTACGTGGTGGCGAACGC
CAACAACCAACTACGGAACGCCGGCATGCTTAGTTTTAAAGTCGACTGCA
GCATCTGCTTGTTCGTTATTCGGACGGATGTTGCCGGCAATGTATTGTTC
ATGTGTCGGGCCAACCGAGGATTCAACACCCGCCAATATGCGAATTTTTC
TGAACGATTTTTCTGTTGTTTTCGCGATGATCTTTAG
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