mRNA_Ecto-sp13_S_contig14532.3487.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14532.3487.1
Unique NamemRNA_Ecto-sp13_S_contig14532.3487.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 1.330e-127
Identity = 197/221 (89.14%), Postives = 207/221 (93.67%), Query Frame = 2 
Query:  173 MVASQMFLGTTATLIASSTAFVAPMAVRSVAITTPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            MVA+Q+FLG+ ATLIASSTAFVAPMAVRS A  + S S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGV+VAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSS-SALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 7.850e-125
Identity = 196/220 (89.09%), Postives = 205/220 (93.18%), Query Frame = 2 
Query:  173 MVASQMFLGTTATLIASSTAFVAPMAVRSVAITTPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 832
            MVASQMFLGT A LIASSTAFVAP+AVRS A  + + S+LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS-AASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
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BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 8.310e-118
Identity = 185/221 (83.71%), Postives = 199/221 (90.05%), Query Frame = 2 
Query:  173 MVASQMFLGTTATLIASSTAFVAPMAVRSVAITTPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            + +S MFLGT ATLIASSTAFVAPMAVRS A  + S S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GVIVAEQYHP FMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPAS-SASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 2.290e-111
Identity = 215/392 (54.85%), Postives = 217/392 (55.36%), Query Frame = 2 
Query:  173 MVASQMFLGTTATLIASSTAFVAPMAVRSVAITTPSCSSLKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            MVASQMF+GT ATLIASSTAFVAP+AVRSVAITTPS SSL MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 336 bits (861), Expect = 3.080e-109
Identity = 185/221 (83.71%), Postives = 186/221 (84.16%), Query Frame = 2 
Query:  173 MVASQMFLGTTATLIASSTAFVAPMAVRSVAITTPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            MVASQMF+GT ATLIASSTAFVAPMAVRSV  TTPS   LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVT-TTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 7.900e-105
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 2 
Query:  353 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            +IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
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BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 4.230e-102
Identity = 165/219 (75.34%), Postives = 188/219 (85.84%), Query Frame = 2 
Query:  179 ASQMFLGTTATLIASSTAFVAPMAVRSVAITTPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            +S MFLGT ATLIASS AFV PMAVRS A  + S S+LKMSAG+DY+ATLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAEQYHPFFMGPDYIGPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVN  DILG
Sbjct:    4 SSNMFLGTAATLIASSAAFVTPMAVRSAAPAS-SASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 3.080e-85
Identity = 131/160 (81.88%), Postives = 144/160 (90.00%), Query Frame = 2 
Query:  353 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 832
            KIFDPLGL+DGA  GDIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++YSPGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVNP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 6.510e-81
Identity = 126/187 (67.38%), Postives = 154/187 (82.35%), Query Frame = 2 
Query:  275 PSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            P+ ++ +MSAGSDYV+TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPA+ HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ DY PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGI GM+ QELV P  I G
Sbjct:   85 PTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.610e-77
Identity = 149/221 (67.42%), Postives = 152/221 (68.78%), Query Frame = 2 
Query:  173 MVASQMFLGTTATLIASSTAFVAPMAVRSVAITTPSCSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 835
            MVASQMF+GT ATLIASSTAFV PMA+RSVA +TPS S  KMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE                                                              EDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVA-STPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE--------------------------------------------------------------EDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14532.3487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI1.330e-12789.14Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI7.850e-12589.09Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI8.310e-11883.71Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE2.290e-11154.85LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K8D0_9PHAE3.080e-10983.71LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7S5_ECTSI7.900e-10598.14Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI4.230e-10275.34Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI3.080e-8581.88Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI6.510e-8167.38Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYI8_9PHAE1.610e-7767.42LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14532contigEcto-sp13_S_contig14532:48..3200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score419.9
Seed ortholog evalue7.6e-115
Seed eggNOG ortholog2880.D7G7S2
Model size1925
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Cds size666
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14532.3487.1prot_Ecto-sp13_S_contig14532.3487.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14532 220..2113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.9337335-UTR-Ecto-sp13_S_contig14532:47..2191681462775.9337335-UTR-Ecto-sp13_S_contig14532:47..219Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14532 48..219 +
1681462775.9872413-UTR-Ecto-sp13_S_contig14532:2113..32001681462775.9872413-UTR-Ecto-sp13_S_contig14532:2113..3200Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14532 2114..3200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.9482613-CDS-Ecto-sp13_S_contig14532:219..4021681462775.9482613-CDS-Ecto-sp13_S_contig14532:219..402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14532 220..402 +
1681462775.9578476-CDS-Ecto-sp13_S_contig14532:893..10161681462775.9578476-CDS-Ecto-sp13_S_contig14532:893..1016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14532 894..1016 +
1681462775.9680035-CDS-Ecto-sp13_S_contig14532:1208..12921681462775.9680035-CDS-Ecto-sp13_S_contig14532:1208..1292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14532 1209..1292 +
1681462775.9792612-CDS-Ecto-sp13_S_contig14532:1837..21131681462775.9792612-CDS-Ecto-sp13_S_contig14532:1837..2113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14532 1838..2113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14532.3487.1

>prot_Ecto-sp13_S_contig14532.3487.1 ID=prot_Ecto-sp13_S_contig14532.3487.1|Name=mRNA_Ecto-sp13_S_contig14532.3487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MVASQMFLGTTATLIASSTAFVAPMAVRSVAITTPSCSSLKMSAGSDYVA
TLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIV
AEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTA
FDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRL
AMIGIAGMLAQELVNPADILG*
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mRNA from alignment at Ecto-sp13_S_contig14532:48..3200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14532.3487.1 ID=mRNA_Ecto-sp13_S_contig14532.3487.1|Name=mRNA_Ecto-sp13_S_contig14532.3487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14532:48..3200+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATACGTGCTTCGAGTCGTGTCACGAGTCTCTTCTTGCTCATCACGCCACA
ATCTCGCCGCATCTTTATCCACCCCGACGCCTGTCCCCTACGCTCCCACA
ACCTCAACACGCCCTCATCCCACCTTCCAACAACAACTAATCTCTCAACA
CACACCCCACCTACTCAGCAAGATGGTCGCCTCTCAGATGTTCCTTGGCA
CTACCGCCACCCTCATCGCCTCCTCGACTGCCTTCGTCGCACCGATGGCC
GTGCGATCTGTTGCCATCACTACTCCTTCCTGCTCGAGCCTCAAGATGAG
CGCCGGTTCGGACTACGTCGCAACTCTGCCCGGAGCTCCCTTCTCTGACG
GAAAGGTGAGGACGCGTGTGTGATTGCGTGAGCCAATACCCAAGGTGGTC
CTTCGTCCCTACGCATGTAGGTCTGTAGGCTACAACACCCTTGGGACCGC
CGTCTCGAGCAACGTTTGTCCGTGTGCGGAGGCTCGCTCGCTCCAGTGTT
GTGCTGTAGAACACCGACTAGCAAGTGTTTTGCGGACGTACACCTACCAA
CATGAACATGTGGTCTGGTTACATCACATAGATTAGACAACTACCGCGCG
TATCGCTACAAGGTATCTGTTTGTGTGGTAGTCACGTGGATACGTACGGC
ATCCTGGGCGCACACACACACTCAACTTCGTCATGCCGCCATCCAAAGTA
TGCTAAAATAACAACGACGGAAAGATTGGGAGTTAAACGGACGATCCATT
ACCGTGCCGTATCAGTGTGAATTTTTACCCTCTGGGTCAAATTGTCTCAC
CCGATGCGGTCTTTAATCCCCGCTGTCTCACACTCTCGTGCGTCAGATCT
TCGACCCCCTGGGCCTATCCGACGGCGCCGCCCCCGGCGACATCAAGAAG
TGGCGCGAGGCCGAGATCAAGCACGGGCGTGTGGCCATGCTTGCGTCCCT
CGGTGTCATTGTTGCAGAGGTGAGGCAGAGAACACACGATGGCATACGAT
GGAGAGATGCCTTCAGAAATGGTATTTCTCTGCCCCAGCGATACTACTAT
CCTGCTTAAGGCGCATGTGAATCCAATGAAGTCTTCCGCGTTGCTCAATA
TTTTTGTCCCTCCGTATTCCACTGTGCTCGCTCTCGTCCCTATCGCCTCT
GCCCACTCTAGCAATACCACCCCTTCTTCATGGGCCCCGACTACATCGGC
CCCGCCGTGGACCACTTCCAGGAGATCAGCGCCCAATTCCCTGAGGTGAG
ACTGGCGCATTTTGTTGCTTACATGATGTGTGAGGAACTTGAAAAGTCCG
GTTTGATCATGACATGTAGCAAGTGGTGTTAGTTCGGGAACTCGGGTAAA
TTCGCAATTCTCTACAGACCGACCATTGCTGGAGAAGTTACACACGTGAT
TCCAGCAACGAATTTCCTGTCCGTCCTCCAATTCCAAACCCGAGTCCTAA
ATTTTGGCGCGGCGTGACCACATTAGAGCACGACACGATCTGTACACATG
GAACGAAGTATTTTCTATGGAGATGTTCCCAGCGATGCGGCGCAGCCGTA
CTGGTATCAGTTGGTTGATCCGGTGGGTTGTACATTGCACGAAGGCCTCT
GCAGCTTGTCCAAAGTGACATAAAGTACTCCCGTGCACGTACTCGAGTTA
TTGGTGACACAACATGGATGCTGTGGTGTCAACGTTGCCACCATTCCCCC
GGCACCATGTGGTCGACGAATGCTGTTTGTTCAAACAACCACTCCCCCTC
TGTGTCTCTGCCCCTCATGCCCGTGTCTCCAAAACCTCAGTTCTGGGCGT
TCTCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACGGCT
TTCGACACCCCCAGCGCTGTCACCGGCGAGGGCGGCCTGAAGGAGGACTA
CTCTCCGGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGACGACG
AGGCGGCTCTGGACGTGATGAAGACCAAGGAGCTGAACAACGGCCGTTTG
GCCATGATCGGCATCGCCGGCATGCTGGCGCAGGAGCTGGTGAACCCGGC
CGACATCCTCGGCTAAGTTGTTTTACTTTGTCGACTGTGTCGGCTGGGAT
TGTCTGGGTGTATGAGTCAGTGTGCTTTAATCAGTGTCAAATGCATATTT
CGATCCGAGAGCATGGGAGGTACATGGCACTTGCGGTATGGTCTTGTCTC
ACGATGGTAGATGCTGGTGTGAATCGGATGTTCGCCACTGCGTAAATACC
AGTCTGTGTTTACTTCTGTACCGGTTTGGTGCGGAGTGTCGACGATTCGG
CTGGCGTTAGGTTCGGCGTTTTTGTGTCCACCGATGGCGATGTCGGCGGA
GGGAAGTAACGGTGTCTTGTCACTGTCATTATGGTGAGAATTTTTGCTTG
GCGTTGTTAAGACAATCCCGCTCAGGCTAACGAACGAGTTCGTGTTGTTT
TACCTTGGACGTTTGGCTGTTGTATTTTGGAAATCCCTCCACGATAGTTT
GCTCTCTTAACTCGGAAGGTCGAGCTGATATGCGACGAAAGGGAAGATGT
AGCGTGCAGTTTCACCTGCCAACATTTCGTGTTTGCGAGCCTGACGTGTT
CGGTGAAGAGAGAGAGTACAGCACGTGCATGCATGCAGCCAAAGCTTTCG
TGCAGGCCTGTCTCCTCGCGACTTGATCTTTGGAACGTTACACGGATGCT
CCGCCTTGTAGCTTGCGTGCAGTGTCGTCCAAGGTGTGCCGCGTCGAGTT
GTTGTGCGACGCGTACGCCCTTGAGTAAGTTTTGTTGTTTGTTTGAGTAT
CATCAACGAGTGTTTGTATCCAGGTGATGACCTCTGTTGTTTACTAGTAG
ATGTCGCGTTATTATTTATGAAAAAGTGAACGAAAACATCCCTGTCCTAG
GGGACATCCTTGTCCCAGGTGGCTCGTGCTGGTGATAGCAGTGCTTTGGT
GCTTGATGGCGGAGGTGCAGTATACTGCCCCCCCCGCCATTGACACTGTG
ATGGGTCTAGCGTACGCACTCGTAGAACGATGCGAGCATGGTGATGGTCT
TTGGACCCGTAAAACGACTCACGCATGCATCTGCCCCGACCACCATCTGA
CCCGAAAGACCACGGCCCACGTGGTTCGGACAACACCGGCATCGCGAACC
GGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14532:48..3200+

>mRNA_Ecto-sp13_S_contig14532.3487.1 ID=mRNA_Ecto-sp13_S_contig14532.3487.1|Name=mRNA_Ecto-sp13_S_contig14532.3487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14532:48..3200+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGCCTCTCAGATGTTCCTTGGCACTACCGCCACCCTCATCGCCTC
CTCGACTGCCTTCGTCGCACCGATGGCCGTGCGATCTGTTGCCATCACTA
CTCCTTCCTGCTCGAGCCTCAAGATGAGCGCCGGTTCGGACTACGTCGCA
ACTCTGCCCGGAGCTCCCTTCTCTGACGGAAAGATCTTCGACCCCCTGGG
CCTATCCGACGGCGCCGCCCCCGGCGACATCAAGAAGTGGCGCGAGGCCG
AGATCAAGCACGGGCGTGTGGCCATGCTTGCGTCCCTCGGTGTCATTGTT
GCAGAGCAATACCACCCCTTCTTCATGGGCCCCGACTACATCGGCCCCGC
CGTGGACCACTTCCAGGAGATCAGCGCCCAATTCCCTGAGTTCTGGGCGT
TCTCCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACGGCT
TTCGACACCCCCAGCGCTGTCACCGGCGAGGGCGGCCTGAAGGAGGACTA
CTCTCCGGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCCGACGACG
AGGCGGCTCTGGACGTGATGAAGACCAAGGAGCTGAACAACGGCCGTTTG
GCCATGATCGGCATCGCCGGCATGCTGGCGCAGGAGCTGGTGAACCCGGC
CGACATCCTCGGCTAA
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