mRNA_Ecto-sp13_S_contig1453.3481.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1453.3481.1
Unique NamemRNA_Ecto-sp13_S_contig1453.3481.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1453.3481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1453contigEcto-sp13_S_contig1453:615..3004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size982
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_000500.2
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.53262-UTR-Ecto-sp13_S_contig1453:614..8851681462775.53262-UTR-Ecto-sp13_S_contig1453:614..885Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1453 615..885 +
1681462775.5415514-UTR-Ecto-sp13_S_contig1453:1484..16161681462775.5415514-UTR-Ecto-sp13_S_contig1453:1484..1616Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1453 1485..1616 +
1681462775.550677-UTR-Ecto-sp13_S_contig1453:1831..18431681462775.550677-UTR-Ecto-sp13_S_contig1453:1831..1843Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1453 1832..1843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.5660355-CDS-Ecto-sp13_S_contig1453:1843..22661681462775.5660355-CDS-Ecto-sp13_S_contig1453:1843..2266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1453 1844..2266 +
1681462775.5762866-CDS-Ecto-sp13_S_contig1453:2860..30041681462775.5762866-CDS-Ecto-sp13_S_contig1453:2860..3004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1453 2861..3004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1453.3481.1prot_Ecto-sp13_S_contig1453.3481.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1453 1844..3004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1453.3481.1

>prot_Ecto-sp13_S_contig1453.3481.1 ID=prot_Ecto-sp13_S_contig1453.3481.1|Name=mRNA_Ecto-sp13_S_contig1453.3481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MGTMLPCKSVSYHQLVESDGLTVEVARGFHSVVHQAMLTLEASPDMQSGN
AGDRWGRAAGKGCLAGSSGVSRVLGLIGSQYVLWSKVCGGLASRYYSPGA
VARCRGCREFFREGVLKRLAQAAKPVPHPCTRNKDITSAEKEIAGLAWRT
SLGGERSSHRATRVGRGNAVHASSRESLGFGSTTVEKR*
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mRNA from alignment at Ecto-sp13_S_contig1453:615..3004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1453.3481.1 ID=mRNA_Ecto-sp13_S_contig1453.3481.1|Name=mRNA_Ecto-sp13_S_contig1453.3481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1453:615..3004+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTACCTTTCTTTTCTCGAATGCTCGTGGCAACCGGCGACCCTGCGCTG
CATTCTGCCCCTCATCACGTTCTTTTCTGCGCTCAACAGACGCACGCCAA
GAAGTTCGGGTTTTCGGAGATACTAGACCGGAGAGCAGTTTTCATCATCG
ACTCCTTTAGCTACGGCGGGTTCTCCGACGGCCTGCTTGAGGCTTTGCCC
ATCGGTCCGCTGGGAAGAACGCAGACGAGGGGGTGTTCTTGCAGACACAT
AGCCAAGGGGTCAACGTTAAGGTACATAGCCTAGGTGTTGAGGAAAATGT
TCCTCTGGCCTTACCGAAGAAGATTATTCACACCGCATCGCGTCGCATCA
TGGATGTTGGGGTGATGCAGCATATGGTGCAGCAGTTCGAAGCCCAACGA
AGGTTGATCGTGAGAGTGGGTGGGCGTCGCGGAGATGGACTGAGATGTTG
TTTCACATTTATCGGTGTGAGGTGCGGAATTCCGGACGACCCTACTGTAG
CCCCCATTATCCGTTCCGGCAAGGTCAAGGTTTACGACAGAGGGGTGGTG
ACTCCGCAGGGTGGGACGCCGCCTCCGGTGATTGGCTTGGATGTTTATGA
GCTGGTCGGTCCTCTGTTTACCGCTCGTATATCCAACCTCACACTCAATC
TCACACATCGCTCTGTCGTTATGATGGCTGTTTTCAAATTCACACCCGGT
TTCACACACCGCTCTGTTGTTATAGCTGTCTTCAAGATCGCATACGGCTT
TCTTTACGCCCCTAAGGAAGGTCTTGAGGCTTACTGTGCCATAAGGTAGC
GCTTGTACTTGCGGTTGAGAAACGCTGGGAGTGTTACTGTCGTTGTGTCT
CTCTCCTGCCGTTCGTCCAGGTGTTAATCAGCAAGCCAGACATCGCTGGT
TGTGGAGAGGTGTCCAGTGCTACCATCAACGGCAAGAGCGTCGACGACCA
TGCATCTCTCAAAGGGCGGCGTGTTAATCACTGCAAGGACGATGTCGCGA
TCGTGAGCTACAATGAATACCGAATGTAGGATTTGGGGTACTCAGGCAGA
CTGGCAGGTGAACCAACTGATCCCGGGGGGCTCGTAACGGGACCAGCTAA
ACAAAACCCTTCCCGGCAGTAATATTCAATTAGCGACATGTGCCATATGA
CTAGATGACGTCTAAACGTACCTGCTCCTCGTCGGCTTCTCCGACTCTTG
GTTGAATTGAACGGCAGGTTCTAGGGGTGATGGGAACGATGCTGCCGTGC
AAGAGCGTAAGCTACCACCAACTGGTCGAGAGCGACGGTTTGACCGTCGA
GGTCGCACGTGGCTTCCACAGTGTCGTCCATCAAGCGATGCTTACCCTCG
AGGCGTCCCCCGACATGCAATCCGGAAATGCCGGAGATCGTTGGGGACGC
GCTGCGGGTAAAGGTTGCTTGGCGGGGTCTTCCGGTGTTTCCAGGGTCTT
GGGCCTGATAGGTAGCCAATACGTGCTTTGGTCCAAAGTCTGTGGCGGGC
TGGCCAGCCGCTACTACAGCCCGGGAGCTGTCGCTCGATGTAGAGGGTGC
AGGGAATTTTTTCGCGAAGGGGTTCTGAAGAGGTTGGCCCAGGCGGCGAA
GCCGGTACCACACCCGTGCACCAGAAACAAGGACATCACGTCCGCGGAAA
AGGTGTGCCGCCTTATGGCCTGCAAGTTGTTGGCCGTCAGTGAATCAACG
GTCGTCGGGTGCGCTGTACTCATGGCACACACGTGTTATCCACTGTGCTT
TCCACCTCTCTCTCACGCTCTCAATGTTGGCCTGTCTTTGTGTATGCCCC
CGCCCCACCTGCAAAGGAAGTGGGTTCAAAAAGCGGAAAGTGAAGTCAGT
AGGATTGATAAACAAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAG
GAAGGAACGATTGGCCATCGGTAATCGGTCGTGTGGGAACAACGCTCCGT
CCTCTCGAGGACGCATGGTCAATGGTCTAACCGCTAAGGCATGCAAAACA
TACGGAACCCCCCCCCCCCCCCCCCCCCTTCTTTCCCCCAGAGTTGAAAG
GAAAGAAAATATAGGGGATCTTTTTGTGGGTGAGGTGGGGGGGGGGAGAA
NNNNNNNNNNGGTAACCGTGCGGTGGGGAACAACGTCCCCTCCCCTCGGG
AGGCGTTTGTCACTGGTTGAACCCCTAAGGCATGCAAAACATACGGAAAC
CCCCCCCCCCCCCCCCCTTATCTTGCCCACTGGTGTGACAGGACAGGAAA
TTGCAGGGCTTGCTTGGCGGACGAGCTTGGGGGGCGAGAGAAGCTCACAT
CGGGCTACAAGAGTGGGTCGTGGTAACGCGGTACACGCAAGCAGCAGGGA
GTCGTTAGGGTTCGGATCAACGACCGTCGAGAAGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1453:615..3004+

>mRNA_Ecto-sp13_S_contig1453.3481.1 ID=mRNA_Ecto-sp13_S_contig1453.3481.1|Name=mRNA_Ecto-sp13_S_contig1453.3481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1453:615..3004+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAACGATGCTGCCGTGCAAGAGCGTAAGCTACCACCAACTGGTCGA
GAGCGACGGTTTGACCGTCGAGGTCGCACGTGGCTTCCACAGTGTCGTCC
ATCAAGCGATGCTTACCCTCGAGGCGTCCCCCGACATGCAATCCGGAAAT
GCCGGAGATCGTTGGGGACGCGCTGCGGGTAAAGGTTGCTTGGCGGGGTC
TTCCGGTGTTTCCAGGGTCTTGGGCCTGATAGGTAGCCAATACGTGCTTT
GGTCCAAAGTCTGTGGCGGGCTGGCCAGCCGCTACTACAGCCCGGGAGCT
GTCGCTCGATGTAGAGGGTGCAGGGAATTTTTTCGCGAAGGGGTTCTGAA
GAGGTTGGCCCAGGCGGCGAAGCCGGTACCACACCCGTGCACCAGAAACA
AGGACATCACGTCCGCGGAAAAGGAAATTGCAGGGCTTGCTTGGCGGACG
AGCTTGGGGGGCGAGAGAAGCTCACATCGGGCTACAAGAGTGGGTCGTGG
TAACGCGGTACACGCAAGCAGCAGGGAGTCGTTAGGGTTCGGATCAACGA
CCGTCGAGAAGCGGTGA
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