mRNA_Ecto-sp13_S_contig14528.3480.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig14528.3480.1
Unique Name	mRNA_Ecto-sp13_S_contig14528.3480.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 2.590e-91
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query:    1 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI
Sbjct:  182 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 6.450e-89
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query:    1 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI
Sbjct:  182 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.050e-82
Identity = 131/148 (88.51%), Postives = 137/148 (92.57%), Query Frame = 1

Query:    1 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            M DAVKE HQ +EV+ PAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQ AVA +SAGLNESVLVSHAQAGSLQ KALALK +YHKLL+G  KRQAFE+TAEFFEVA STLREWELSYRTKGHI
Sbjct:    1 MSDAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSSAGLNESVLVSHAQAGSLQLKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 148

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 5.870e-72
Identity = 124/148 (83.78%), Postives = 134/148 (90.54%), Query Frame = 1

Query:    1 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            MLDAVKE HQ + V+ PAFLKRQSNRG+GRKEALRKLAKH+SQL+K AAASAACRSGWERGQ   RAVIKECQSA+A TSAGLNESVLVSH+QAGSLQFKALA K +YHKLL+G  KRQAFE+TAEFFEVA STLREWELSYRTKGHI
Sbjct:  101 MLDAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIAVTSAGLNESVLVSHSQAGSLQFKALARKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 248

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.900e-67
Identity = 120/154 (77.92%), Postives = 128/154 (83.12%), Query Frame = 1

Query:   10 AVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAAT---------SAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            AVKE HQ +EV+ PAFLKRQSNRGVGRKEALRKLAKHRSQLEKAA ASAACRSGWE GQDYFRAVIKECQS  + T         +   +ESVLVSHAQAGSLQFKALALK +YH LL+G  KRQAFE+TAEFFEVA ST REWELSYRTKGHI
Sbjct:  191 AVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSSHTCWTQCKRVWATRCSESVLVSHAQAGSLQFKALALKGLYHMLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHI 344

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.990e-65
Identity = 120/150 (80.00%), Postives = 126/150 (84.00%), Query Frame = 1

Query:    1 MLDAVKEVHQHQEVWGPA--FLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            M DAVKE HQ +EV+ PA  FLKRQSN    RKEALRKL KHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVA TSAGLN         AGSLQFKALALK +YHKLL+G PKRQAFE+TAEFF+VA STLREWELSYRTKGHI
Sbjct:  143 MSDAVKEAHQQEEVYRPAXAFLKRQSN---SRKEALRKLTKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAVTSAGLN---------AGSLQFKALALKGLYHKLLRGVPKRQAFEETAEFFQVASSTLREWELSYRTKGHI 280

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 4.180e-64
Identity = 114/148 (77.03%), Postives = 118/148 (79.73%), Query Frame = 1

Query:    1 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            M DAVKE HQ +E   PAFLKRQSNRG                LEKAAAASAACRSGWERGQDYFR VIKECQSAVA TSAGLNESVLVSH QAGSLQFKALAL  +YHKLL+G  KRQAFE+TAEFFEVA STLREWELSYRTKGHI
Sbjct:  191 MSDAVKEAHQQEEACRPAFLKRQSNRG----------------LEKAAAASAACRSGWERGQDYFRVVIKECQSAVAVTSAGLNESVLVSHTQAGSLQFKALALNGLYHKLLRGVSKRQAFEETAEFFEVAFSTLREWELSYRTKGHI 322

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 5.860e-64
Identity = 105/148 (70.95%), Postives = 124/148 (83.78%), Query Frame = 1

Query:    1 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            ML A +EV +H++ W PAFLKRQSNRGVGRKEALRKLAKHRSQLEKA+ ASAAC++GWE+G +YFRAV KEC  AVAATSAGL E++ VSHAQAG L  +A AL+AVY KLL+G  KRQAFE +AEF E+A  T+++WEL YRTKGHI
Sbjct:    1 MLAASQEVDKHEKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAATSAGLEETIDVSHAQAGKLLTQAQALRAVYSKLLQGVSKRQAFEGSAEFLELAVGTIKQWELEYRTKGHI 148

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: D8LEU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU9_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 5.390e-61
Identity = 101/148 (68.24%), Postives = 124/148 (83.78%), Query Frame = 1

Query:    1 MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 444
            M DA +EV +H++ W  AFLKRQSNRGV R EAL KLA HRSQLEKAA ASAA ++GWE+G +YFRAV+KECQSAVAATSAGL+E++ VSHAQAG L  KALAL+AVY KLL+G  +R+AFE +AEF E+++ T+++WEL YRTKGHI
Sbjct:   28 MFDAAREVDRHEKDWRQAFLKRQSNRGVRRTEALGKLANHRSQLEKAALASAARKAGWEKGVEYFRAVVKECQSAVAATSAGLDETMDVSHAQAGKLLIKALALRAVYSKLLEGVSRREAFEASAEFVEMSEGTIKQWELEYRTKGHI 175

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BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Match: A0A6H5KNH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH0_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.910e-40
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 1

Query:   79 GVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEF 381
            G G++    + AKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVA TSAGLNE V+VSHAQAGSLQFK L LK +YHKLL+G  KRQAFE+ AEF
Sbjct:    6 GCGQEGGSSQAAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAVTSAGLNEYVIVSHAQAGSLQFKVLVLKGLYHKLLRGVSKRQAFEEMAEF 106

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig14528.3480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17


Match Name	E-value	Identity	Description
A0A6H5KAS5_9PHAE	2.590e-91	100.00	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU25_9PHAE	6.450e-89	100.00	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5LDJ5_9PHAE	1.050e-82	88.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUL0_9PHAE	5.870e-72	83.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVH8_9PHAE	1.900e-67	77.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JGM4_9PHAE	1.990e-65	80.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K534_9PHAE	4.180e-64	77.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G1V5_ECTSI	5.860e-64	70.95	Uncharacterized protein n=2 Tax=Ectocarpus silicul...	[more]
D8LEU9_ECTSI	5.390e-61	68.24	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KNH0_9PHAE	1.910e-40	79.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig14528	contig	Ecto-sp13_S_contig14528:2408..3153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	444
Hectar predicted targeting category	other localisation
Exons	2
Cds size	444

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462775.4402707-CDS-Ecto-sp13_S_contig14528:2407..2599	1681462775.4402707-CDS-Ecto-sp13_S_contig14528:2407..2599	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14528 2408..2599 -
1681462775.450734-CDS-Ecto-sp13_S_contig14528:2901..3153	1681462775.450734-CDS-Ecto-sp13_S_contig14528:2901..3153	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14528 2902..3153 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig14528.3480.1	prot_Ecto-sp13_S_contig14528.3480.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig14528 2408..3153 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig14528:2408..3153-
coding sequence from alignment at Ecto-sp13_S_contig14528:2408..3153-

protein sequence of mRNA_Ecto-sp13_S_contig14528.3480.1

>prot_Ecto-sp13_S_contig14528.3480.1 ID=prot_Ecto-sp13_S_contig14528.3480.1|Name=mRNA_Ecto-sp13_S_contig14528.3480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA
SAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFK
ALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI

mRNA from alignment at Ecto-sp13_S_contig14528:2408..3153-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig14528.3480.1 ID=mRNA_Ecto-sp13_S_contig14528.3480.1|Name=mRNA_Ecto-sp13_S_contig14528.3480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14528:2408..3153- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGACGCAGTGAAGGAGGTGCACCAGCACCAAGAGGTCTGGGGACC
AGCGTTCCTCAAGCGCCAGAGCAACAGGGGTGTGGGCAGGAAGGAGGCTC
TTCGCAAGCTGGCGAAGCATCGATCGCAGCTGGAAAAGGCCGCCGCAGCA
TCCGCTGCATGTAGATCGGGCTGGGAGCGGGGACAGGACTATTTCCGCGC
CGTCATCAAGGAATGCCAATCCGCTGTGGCAGCCACGTCTGCTGGACTCA
ATGTAAGAGATGTTGGTGCCACAATGTACACGATACAGTGTAATGTTTGC
ATACGATGATTGTAGTTTTCCTCCTGCAAGACTGCTGTTGGTTGTGGTGC
TATGTGGTTGTCGCAATGCTGCTGCTGTTGCTGCTGCTGCCGTATATATT
TGATGCGATGCAGCCCATGTACATGTAGGTGAAGTTTCGCGTTCCTGTTG
GGCCGCAAGAACCACTCTGCCCCCACCCTCCTCTTTCTTCCCCGCTGCTT
GTCCCGATCATCTTACCATGTTTTTGCTCCCTTTCCTACCTTACGTACAT
GCAGGAGTCTGTTCTCGTCTCGCACGCGCAAGCCGGCAGCCTGCAGTTCA
AGGCCTTGGCTCTGAAAGCAGTGTACCACAAGCTGCTCAAGGGGGCGCCC
AAGAGGCAAGCTTTCGAGGACACCGCGGAGTTTTTTGAAGTGGCGGACAG
CACCCTCCGTGAGTGGGAGCTTTCCTACCGCACCAAGGGCCATATC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14528:2408..3153-

>mRNA_Ecto-sp13_S_contig14528.3480.1 ID=mRNA_Ecto-sp13_S_contig14528.3480.1|Name=mRNA_Ecto-sp13_S_contig14528.3480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14528:2408..3153- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGACGCAGTGAAGGAGGTGCACCAGCACCAAGAGGTCTGGGGACC
AGCGTTCCTCAAGCGCCAGAGCAACAGGGGTGTGGGCAGGAAGGAGGCTC
TTCGCAAGCTGGCGAAGCATCGATCGCAGCTGGAAAAGGCCGCCGCAGCA
TCCGCTGCATGTAGATCGGGCTGGGAGCGGGGACAGGACTATTTCCGCGC
CGTCATCAAGGAATGCCAATCCGCTGTGGCAGCCACGTCTGCTGGACTCA
ATGAGTCTGTTCTCGTCTCGCACGCGCAAGCCGGCAGCCTGCAGTTCAAG
GCCTTGGCTCTGAAAGCAGTGTACCACAAGCTGCTCAAGGGGGCGCCCAA
GAGGCAAGCTTTCGAGGACACCGCGGAGTTTTTTGAAGTGGCGGACAGCA
CCCTCCGTGAGTGGGAGCTTTCCTACCGCACCAAGGGCCATATC