mRNA_Ecto-sp13_S_contig14526.3479.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14526.3479.1
Unique NamemRNA_Ecto-sp13_S_contig14526.3479.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14526.3479.1 vs. uniprot
Match: D8LHS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS2_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 3.560e-34
Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 DEGVEEGQDKETSKEQVKTEVKVDGVLVDTPFQFPFPVVAEKPEVKSECVQDGAASKVPHAKNEDGHLSAGAPHMKKAKTTTDEGVEEGQDKETSKEQV 297
            +EG EEGQD ET KEQVKTEVK DGVL D PFQFPFPV AEKP VKSECVQDG +SKVP+ K E G++SAGA HMK AK TT++GV EGQD  T KEQ+
Sbjct:  316 EEGKEEGQDIETGKEQVKTEVKFDGVLADAPFQFPFPVAAEKPAVKSECVQDGTSSKVPNVKKEGGNVSAGASHMK-AKKTTEQGVAEGQDIGTGKEQM 413
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BLAST of mRNA_Ecto-sp13_S_contig14526.3479.1 vs. uniprot
Match: D8LHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS0_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.150e-18
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   43 EQVKTEVKVDGVLVDTPFQFPFPVVAEKPEVKSECVQDGAASKVPHAKNEDGHLSAGAPHMK 228
            E VKTEVKV GVL D PFQFPFPV  EKP VKSECVQDGA+SKVP  K E  ++SAGA H+K
Sbjct:  878 ETVKTEVKVHGVLADAPFQFPFPVATEKPAVKSECVQDGASSKVPKVKKEGRNVSAGASHIK 939
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14526.3479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHS2_ECTSI3.560e-3472.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHS0_ECTSI1.150e-1872.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14526contigEcto-sp13_S_contig14526:299..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size323
Hectar predicted targeting categoryother localisation
Exons3
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.3915768-CDS-Ecto-sp13_S_contig14526:298..3461681462775.3915768-CDS-Ecto-sp13_S_contig14526:298..346Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14526 299..346 +
1681462775.4007416-CDS-Ecto-sp13_S_contig14526:449..6291681462775.4007416-CDS-Ecto-sp13_S_contig14526:449..629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14526 450..629 +
1681462775.4094532-CDS-Ecto-sp13_S_contig14526:769..8621681462775.4094532-CDS-Ecto-sp13_S_contig14526:769..862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14526 770..862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14526.3479.1prot_Ecto-sp13_S_contig14526.3479.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14526 299..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14526.3479.1

>prot_Ecto-sp13_S_contig14526.3479.1 ID=prot_Ecto-sp13_S_contig14526.3479.1|Name=mRNA_Ecto-sp13_S_contig14526.3479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
DEGVEEGQDKETSKEQVKTEVKVDGVLVDTPFQFPFPVVAEKPEVKSECV
QDGAASKVPHAKNEDGHLSAGAPHMKKAKTTTDEGVEEGQDKETSKEQVG
GRGCLA*
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mRNA from alignment at Ecto-sp13_S_contig14526:299..862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14526.3479.1 ID=mRNA_Ecto-sp13_S_contig14526.3479.1|Name=mRNA_Ecto-sp13_S_contig14526.3479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14526:299..862+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAAGGCGTGGAGGAGGGACAAGATAAAGAGACAAGCAAGGAGCAGGT
GGGCGGGCGTGGCTGTCTCGCATAGCAGTGGTACAATTCGATTGTCCATC
TCAACGGCTGGCAACTCTTGTGATTCACCTGCGTTTTTCCATATTACTCA
GGTGAAAACGGAAGTCAAGGTTGACGGTGTCTTAGTGGACACACCCTTCC
AGTTTCCATTCCCGGTGGTCGCGGAGAAACCTGAGGTGAAGAGTGAGTGT
GTCCAGGACGGCGCCGCTTCCAAGGTACCACACGCGAAGAACGAAGACGG
CCATCTCTCCGCGGGGGCCCCTCACATGAAGGTGAATGGGTATGTGTCGA
GCATGGCAGCAAGTCGCACGTCTCCTTGGACCGAAACGGCGGTGTTCTCT
TCCCTTGCTTTGTTTTGCAAAGTGACCGGCATCATTTCGCTTACGTCGTC
CCTCGTGTCCGTCGATCACAGAAGGCGAAAACCACGACCGACGAAGGCGT
GGAGGAGGGACAAGATAAAGAGACAAGCAAGGAGCAGGTGGGCGGGCGTG
GCTGTCTCGCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14526:299..862+

>mRNA_Ecto-sp13_S_contig14526.3479.1 ID=mRNA_Ecto-sp13_S_contig14526.3479.1|Name=mRNA_Ecto-sp13_S_contig14526.3479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14526:299..862+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAAGGCGTGGAGGAGGGACAAGATAAAGAGACAAGCAAGGAGCAGGT
GAAAACGGAAGTCAAGGTTGACGGTGTCTTAGTGGACACACCCTTCCAGT
TTCCATTCCCGGTGGTCGCGGAGAAACCTGAGGTGAAGAGTGAGTGTGTC
CAGGACGGCGCCGCTTCCAAGGTACCACACGCGAAGAACGAAGACGGCCA
TCTCTCCGCGGGGGCCCCTCACATGAAGAAGGCGAAAACCACGACCGACG
AAGGCGTGGAGGAGGGACAAGATAAAGAGACAAGCAAGGAGCAGGTGGGC
GGGCGTGGCTGTCTCGCATAG
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