mRNA_Ecto-sp13_S_contig14525.3478.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14525.3478.1
Unique NamemRNA_Ecto-sp13_S_contig14525.3478.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: A0A6H5JDE1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDE1_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.780e-49
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:   16 MEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            MEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAG WS+YADKRGR+TAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG
Sbjct:    1 MEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGSWSIYADKRGRRTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 91
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: A0A6H5JUA1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUA1_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.500e-48
Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:    1 WVVDSMEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            WV+D+MEILV+AFVLE IAT+FEL SVGKGLIGSASFFGMLVGAGFWS+YADKRGR+TAFVSSLACVFVGGV SALSPS ++LCLCR +VGFGVGG
Sbjct:   18 WVIDAMEILVVAFVLEDIATTFELGSVGKGLIGSASFFGMLVGAGFWSIYADKRGRRTAFVSSLACVFVGGVFSALSPSLYILCLCRVLVGFGVGG 113
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: A0A6H5JL66_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL66_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.910e-47
Identity = 82/96 (85.42%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:    1 WVVDSMEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            W VDSME+LVLAF LEAIATSFELSSVGKGL+GSASFFGMLVGAGFWS+YADKRGR+TAFVSSLAC FVGGV SA S SF +LCLCR +VGFGVGG
Sbjct:   80 WAVDSMEVLVLAFALEAIATSFELSSVGKGLVGSASFFGMLVGAGFWSIYADKRGRRTAFVSSLACAFVGGVFSAFSSSFHLLCLCRVLVGFGVGG 175
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: D7FV27_ECTSI (Major facilitator transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV27_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 4.020e-46
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:   16 MEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            ME+LVLAF LEAIATSFELSSV KGLIGSASFFGMLVGAGFWS+YADKRGR+TAFVSSLACVFVGGV SALSPSF VLCLCR +VGFGVGG
Sbjct:    1 MEVLVLAFALEAIATSFELSSVEKGLIGSASFFGMLVGAGFWSIYADKRGRRTAFVSSLACVFVGGVFSALSPSFHVLCLCRVLVGFGVGG 91
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: A0A3N5WNN0_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5WNN0_9CHLR)

HSP 1 Score: 92.4 bits (228), Expect = 5.900e-20
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 WVVDSMEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            W  D+ME+L+++F L +I+  + L++  +GL+G+A F GMLVGA FW   +D+ GRK  FVS++A   + G+LSA +PSF  L + R + GFGVGG
Sbjct:   32 WAADAMEVLLISFALPSISQEWNLTNAQRGLLGTAIFLGMLVGALFWGRLSDRVGRKIGFVSTIAIDSIFGLLSAFAPSFAWLVVLRTLTGFGVGG 127
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: A0A838H0D0_9ACTN (MFS transporter n=1 Tax=Euzebyales bacterium TaxID=2740540 RepID=A0A838H0D0_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 7.400e-18
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 WVVDSMEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            W  D+ EIL++AF L AI+  F +S    GL+ +A+F GMLVGA FW V +D+ GR+  F  ++    V G LSAL+P+   L + RA+ GFG+GG
Sbjct:   33 WAADAAEILLIAFALPAISAEFGVSRAAGGLLVTATFLGMLVGAWFWGVTSDRVGRRAGFQLTVLIFAVFGALSALAPNLATLAVLRALTGFGLGG 128
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: Q1AUV3_RUBXD (Major facilitator superfamily MFS_1 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) TaxID=266117 RepID=Q1AUV3_RUBXD)

HSP 1 Score: 84.7 bits (208), Expect = 3.640e-17
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 WVVDSMEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            WV DS EIL+L F L +I   F +S    GLI +A+F GMLVGA FW   +D  GR+T F  ++    V G+LSA +PS+  L + R + GFG+GG
Sbjct:   34 WVADSAEILMLGFALPSIIAEFAISPAQAGLIATATFAGMLVGAWFWGTVSDYIGRRTGFQLTVLTFAVFGLLSAFAPSWEWLAVLRFITGFGLGG 129
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: A0A8J3X491_9ACTN (MFS transporter n=1 Tax=Planosporangium mesophilum TaxID=689768 RepID=A0A8J3X491_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 1.250e-16
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 WVVDSMEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            W  D+ EIL+L+F L  IA  F L+    G++ +++F GMLVGA FW V AD+ GR+  F  ++A   V GV SA +P    L + RA+ GFG+GG
Sbjct:   27 WAADAAEILLLSFALPGIAREFHLTPPAAGVVVTSTFAGMLVGAWFWGVMADRVGRRLGFQLTIAMFAVFGVASAFAPDPVTLAVLRALTGFGLGG 122
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: A0A7S2QXB1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S2QXB1_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 4.330e-16
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 WVVDSMEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            W  D+ME+++L+F+  ++   F + +  +G + S  F GM++GA  W V +D RGRKTA + +     +GGV SAL+PSF V+ L R +VG G+GG
Sbjct:   88 WCADAMEMMLLSFIGPSMRCEFGVDADAEGALTSVVFVGMMLGAPGWGVLSDARGRKTALLFATVATLIGGVGSALAPSFAVVLLFRWLVGVGLGG 183
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BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Match: A0A535K187_9CHLR (MFS transporter n=6 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A535K187_9CHLR)

HSP 1 Score: 81.6 bits (200), Expect = 4.490e-16
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 WVVDSMEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRGRKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG 288
            W+ D+M++L+L+F+L  I + F+L   G GLI SA+F GM +GA      AD+ GR+  F  +L    +G  LSAL+P+F  L   R + G G+GG
Sbjct:   36 WMFDAMDVLMLSFLLAPIRSEFKLEPAGVGLIASATFVGMFIGAAAAGRLADRYGRRAVFTVTLVVFSIGSALSALAPTFETLLAARVIAGLGLGG 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14525.3478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDE1_9PHAE1.780e-4996.70MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JUA1_9PHAE1.500e-4885.42MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JL66_9PHAE2.910e-4785.42MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FV27_ECTSI4.020e-4690.11Major facilitator transporter n=1 Tax=Ectocarpus s... [more]
A0A3N5WNN0_9CHLR5.900e-2046.88MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
A0A838H0D0_9ACTN7.400e-1845.83MFS transporter n=1 Tax=Euzebyales bacterium TaxID... [more]
Q1AUV3_RUBXD3.640e-1746.88Major facilitator superfamily MFS_1 n=1 Tax=Rubrob... [more]
A0A8J3X491_9ACTN1.250e-1644.79MFS transporter n=1 Tax=Planosporangium mesophilum... [more]
A0A7S2QXB1_9CHLO4.330e-1641.67Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A535K187_9CHLR4.490e-1641.67MFS transporter n=6 Tax=unclassified Chloroflexi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14525contigEcto-sp13_S_contig14525:3703..4245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score168.7
Seed ortholog evalue1.3e-39
Seed eggNOG ortholog2880.D8LR80
Model size288
Hectar predicted targeting categorychloroplast
Exons2
EggNOG free text desc.N-methylnicotinate transmembrane transporter activity
EggNOG OGsKOG0253@1,KOG0253@2759
Cds size273
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.3406906-UTR-Ecto-sp13_S_contig14525:3702..37171681462775.3406906-UTR-Ecto-sp13_S_contig14525:3702..3717Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14525 3703..3717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.3523293-CDS-Ecto-sp13_S_contig14525:3717..38171681462775.3523293-CDS-Ecto-sp13_S_contig14525:3717..3817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14525 3718..3817 +
1681462775.3653579-CDS-Ecto-sp13_S_contig14525:4072..42451681462775.3653579-CDS-Ecto-sp13_S_contig14525:4072..4245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14525 4073..4245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14525.3478.1prot_Ecto-sp13_S_contig14525.3478.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14525 3718..4245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14525.3478.1

>prot_Ecto-sp13_S_contig14525.3478.1 ID=prot_Ecto-sp13_S_contig14525.3478.1|Name=mRNA_Ecto-sp13_S_contig14525.3478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MEILVLAFVLEAIATSFELSSVGKGLIGSASFFGMLVGAGFWSVYADKRG
RKTAFVSSLACVFVGGVLSALSPSFFVLCLCRAVVGFGVGG
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mRNA from alignment at Ecto-sp13_S_contig14525:3703..4245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14525.3478.1 ID=mRNA_Ecto-sp13_S_contig14525.3478.1|Name=mRNA_Ecto-sp13_S_contig14525.3478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14525:3703..4245+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGTGGTCGATTCGATGGAAATTCTTGTGTTGGCGTTTGTGCTGGAAGC
CATCGCGACCTCGTTCGAGCTGAGCAGCGTCGGAAAGGGGCTAATCGGCA
GTGCTAGTTTCTTTGGTAAGGCGAAGAGGGGCGAGCGGACGGGGGACGGG
GGGTCGTGAGGCAGGCCAAGAGGGAGTGACACACAAAGCGACAGACGTTT
CCGAGGGTTTCCAAGGTATTTCGTGTGTGGGTCATCAGCAAGGTGAACGG
GCACATAGTGTGCTAAAAAAATGACCGAAACGCATTAGAACGCCCCCGCG
CCACCATCTTCGTGGCTTGCCTTCTCACCCCCTTTCGTCTCCTCTACCTT
TCCCTCCCTCTCCGCTGCAGGGATGCTTGTCGGCGCGGGTTTCTGGTCCG
TCTACGCCGACAAACGCGGCCGCAAGACCGCCTTCGTGTCGTCCCTGGCC
TGCGTCTTTGTCGGCGGAGTCCTCTCCGCTCTCTCACCGTCTTTTTTTGT
TCTCTGCCTCTGCCGAGCGGTCGTCGGCTTCGGAGTAGGAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14525:3703..4245+

>mRNA_Ecto-sp13_S_contig14525.3478.1 ID=mRNA_Ecto-sp13_S_contig14525.3478.1|Name=mRNA_Ecto-sp13_S_contig14525.3478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14525:3703..4245+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAATTCTTGTGTTGGCGTTTGTGCTGGAAGCCATCGCGACCTCGTT
CGAGCTGAGCAGCGTCGGAAAGGGGCTAATCGGCAGTGCTAGTTTCTTTG
GGATGCTTGTCGGCGCGGGTTTCTGGTCCGTCTACGCCGACAAACGCGGC
CGCAAGACCGCCTTCGTGTCGTCCCTGGCCTGCGTCTTTGTCGGCGGAGT
CCTCTCCGCTCTCTCACCGTCTTTTTTTGTTCTCTGCCTCTGCCGAGCGG
TCGTCGGCTTCGGAGTAGGAGGT
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