mRNA_Ecto-sp13_S_contig14521.3475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: A0A6H5K3J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J7_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 2.270e-21 Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 1
Query: 1 PGAGTIIAGFFTCSLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 138
PGAGTI+AG T LKNVLVGILQMVTAPILIGWVWSILWGWELWQ
Sbjct: 13 PGAGTIVAGICTFDLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 58
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: A0A6H5JZT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT6_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 3.400e-21 Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 1
Query: 1 PGAGTIIAGFFTCSLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 138
PGAGTI+AG T LKNVLVGILQMVTAPILIGWVWSILWGWELWQ
Sbjct: 28 PGAGTIVAGICTFDLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 73
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: D7FIX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIX6_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 1.670e-17 Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 1 PGAGTIIAGFFTCSLKNVLVGILQMVTAPILIGWVWSILWGWELWQIA 144
PG GT+IAGF TC LK++ GILQ+VT +++GWVWS++WGWELW +A
Sbjct: 30 PGLGTVIAGFLTCKLKSIFTGILQLVTTSLVVGWVWSVMWGWELWTLA 77
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: A0A6H5JTL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL1_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.100e-10 Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 4 GAGTIIAGFFTCSLKNVLVGILQMVTAPILIGWVWSILWGWELWQIA 144
G GTII G CS + ++VG+LQ+ T+ I+IGWVWSI WGWEL +++
Sbjct: 34 GVGTIIVGALACSCETLIVGLLQLFTSCIIIGWVWSIWWGWELLEVS 80
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: UPI000711DF2D (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711DF2D) HSP 1 Score: 49.7 bits (117), Expect = 1.050e-6 Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 1 PGAGTIIAGFFT---CSLKNVLVGILQMVTAPILIGWVWSILWGWELW 135
PG GT+I G C + L G +Q++TAP +IGWVWSI+WG +W
Sbjct: 25 PGIGTMIGGLINAGGCDICIFLCGWVQLLTAPFIIGWVWSIIWGCRMW 72
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: A0A7S0UD76_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UD76_HEMAN) HSP 1 Score: 49.7 bits (117), Expect = 2.150e-6 Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 1
Query: 1 PGAGTIIAGFFTCSLKNVLVGILQMVTAPILIGWVWSILWGW 126
PG G+++AG V++G+LQ++T ++GW+WSI WGW
Sbjct: 51 PGVGSMVAGAMESKWSTVIIGVLQLITCWFILGWIWSIWWGW 92
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: A0A6A5BLQ1_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BLQ1_NAEFO) HSP 1 Score: 48.5 bits (114), Expect = 3.350e-6 Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 1 PGAGTIIAGFFTCSLKNV----LVGILQMVTAPILIGWVWSILWGWELWQ 138
PG GT+IA F T + + +VGILQ+VT+ +LIGW+W+I WG+++ Q
Sbjct: 26 PGFGTLIAAFITSEKEKMQPTLIVGILQIVTSWLLIGWLWAIWWGYKIMQ 75
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: UPI000711C2CE (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C2CE) HSP 1 Score: 48.9 bits (115), Expect = 3.660e-6 Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 1 PGAGTII-AGFFTCSLKNVLVGILQMVTAPILIGWVWSILWG 123
PG GTII A CS K LVG+LQ++ + I+IGW+WSI WG
Sbjct: 36 PGIGTIIGAAIGKCSKKAYLVGLLQLILSVIIIGWIWSIFWG 77
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: A0A7S0VWA5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VWA5_9CRYP) HSP 1 Score: 48.9 bits (115), Expect = 7.320e-6 Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 1
Query: 1 PGAGTIIAGFFTCSLKNVLVGILQMVTAPILIGWVWSILWGW 126
PG G+++AG V++G+LQ++T ++GW+WSI WGW
Sbjct: 80 PGVGSMVAGAMESKWSTVIIGVLQLLTCWFILGWIWSIWWGW 121
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Match: A0A6A5BW58_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BW58_NAEFO) HSP 1 Score: 47.0 bits (110), Expect = 1.360e-5 Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 1 PGAGTIIAGFFTCSLKNV----LVGILQMVTAPILIGWVWSILWGWELWQ 138
PG GTI+A T + + +VGILQ+VT+ ILIGW+W+I WG+++ Q
Sbjct: 26 PGFGTILAALITSEKEKMQPTLIVGILQIVTSWILIGWLWAIWWGYKIMQ 75 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14521.3475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14521.3475.1 >prot_Ecto-sp13_S_contig14521.3475.1 ID=prot_Ecto-sp13_S_contig14521.3475.1|Name=mRNA_Ecto-sp13_S_contig14521.3475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp PGAGTIIAGFFTCSLKNVLVGILQMVTAPILIGWVWSILWGWELWQIAback to top mRNA from alignment at Ecto-sp13_S_contig14521:3436..3579- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14521.3475.1 ID=mRNA_Ecto-sp13_S_contig14521.3475.1|Name=mRNA_Ecto-sp13_S_contig14521.3475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14521:3436..3579- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14521:3436..3579- >mRNA_Ecto-sp13_S_contig14521.3475.1 ID=mRNA_Ecto-sp13_S_contig14521.3475.1|Name=mRNA_Ecto-sp13_S_contig14521.3475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14521:3436..3579- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |