mRNA_Ecto-sp13_S_contig14506.3465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14506.3465.1
Unique NamemRNA_Ecto-sp13_S_contig14506.3465.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14506.3465.1 vs. uniprot
Match: D7FST4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST4_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 5.950e-72
Identity = 128/182 (70.33%), Postives = 134/182 (73.63%), Query Frame = 1 
Query:    1 MARTPATHPRLASLYLLVAVTLVLLHADAQRDCTAPSQACVESGVCTECTFFISGDSFVDCAAGIGAEIGSCEYTEQLACCVNEVSGIDCVGDPVTFEFLECFYDPTEACDGDWTXXXXXXXXXXXTPAPV-AASGTDTPVAGXXXXXXXXXXXXXXXXXXXXSAGIDDTMAPSATDGGESP 543
            MARTPA  PRLASLYLLVA T+V+L+ADAQRDCT  SQACVES VC ECT F SGDSF+DC AGIGAE GSCEY EQ ACC+NEVSGIDCV DPVTFEF EC YDPTEACDG WT           TPAP  AASGTDTPVAG XXX                SAG+DDTMAPSATDGG SP
Sbjct:    1 MARTPAAPPRLASLYLLVAATVVVLYADAQRDCTGTSQACVESDVCLECTSFTSGDSFLDCLAGIGAEFGSCEYVEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTCNGDTTNGGDTTPAPAPAASGTDTPVAGGXXXAETAAPAAPTAATT--SAGVDDTMAPSATDGGMSP 180
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BLAST of mRNA_Ecto-sp13_S_contig14506.3465.1 vs. uniprot
Match: A0A6H5K7K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K6_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.890e-51
Identity = 93/140 (66.43%), Postives = 97/140 (69.29%), Query Frame = 1 
Query:  121 VESGVCTECTFFISGDSFVDCAAGIGAEIGSCEYTEQLACCVNEVSGIDCVGDPVTFEFLECFYDPTEACDGDWTXXXXXXXXXXXTPAPVAASGTDTPVAGXXXXXXXXXXXXXXXXXXXXSAGIDDTMAPSATDGGES 540
            VES VCTECTFF SG+SFVDC AGIGAEIGSCEYTEQLACC+NEVSGIDC+ DPVTFEF E FYDPTEACDG WT           TPAP AA GTDTPVAG                    SAG+DD MA SATDGG S
Sbjct:   18 VESDVCTECTFFTSGNSFVDCLAGIGAEIGSCEYTEQLACCLNEVSGIDCLSDPVTFEFFEYFYDPTEACDGGWTCSGDITNGGDTTPAPAAAFGTDTPVAGRGGGAETTAPAAPTATTT--SAGVDDIMASSATDGGVS 155
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BLAST of mRNA_Ecto-sp13_S_contig14506.3465.1 vs. uniprot
Match: D7FST2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST2_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.770e-38
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 MARTPATHPRLASLYLLVAVTLVLLHADAQ-RDCT--APSQACVESGVCTECTFFISGDSFVDCAAGIGAEIGSCEYTEQLACCVNEVSGIDCVGDPVTFEFLECFYDPTEACD 333
            MARTP THPRLASLYLLVA T V+L+ADAQ  +CT  A +QAC ES +C +CT  I+G SF DC +GI A IGSCE+TEQ ACC+NEVSGIDCV D  TFEF EC YD    CD
Sbjct:    1 MARTPGTHPRLASLYLLVAATAVVLYADAQLEECTEAAVTQACDESAICLQCTAVITGGSFSDCLSGIDATIGSCEFTEQAACCLNEVSGIDCVSDLATFEFFECVYDLAAPCD 114
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BLAST of mRNA_Ecto-sp13_S_contig14506.3465.1 vs. uniprot
Match: A0A6H5JRJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.860e-31
Identity = 63/113 (55.75%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:    1 MARTPATHPRLASLYLLVAVTLVLLHADAQRDCTAPS--QACVESGVCTECTFFISGDSFVDCAAGIGAEIGSCEYTEQLACCVNEVSGIDCVGDPVTFEFLECFYDPTEACD 333
            MARTP T PRLASLY L+A + V+LHADAQ  CT  +  QAC  S VC EC   ++  SF+DC +GI A + SCE+TEQ ACC+NE+SG DC+ D  T E+ +C YD  E CD
Sbjct:    1 MARTPGTRPRLASLYFLIAASAVVLHADAQN-CTEDTVTQACDSSDVCPECIAVLTDSSFLDCLSGINAALDSCEFTEQAACCLNEISGTDCLSDLPTLEYFDCLYDLAEPCD 112
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BLAST of mRNA_Ecto-sp13_S_contig14506.3465.1 vs. uniprot
Match: D7FST6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST6_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.220e-23
Identity = 59/147 (40.14%), Postives = 80/147 (54.42%), Query Frame = 1 
Query:    1 MARTPATHPRL----ASLYLLVAVTLVLLHADAQ-RDCTAPSQACVESGVCTECTFFISGDSFVDCAAGIGAEIGSCEYTEQLACCVNEVSGIDCVGDPVTFEFLECFYDPTEAC-DGDWTXXXXXXXXXXXTPAPVAASGTDTPVA 423
            M R+PA  PRL    A+L LL A   V+L  DAQ RDC+    AC ES  C+ C    S  ++  C + + +++  C+Y E   CC NE SG DCVGDPVT+ +LEC +D T++C D DWT            P+ +  S +  P A
Sbjct:    1 MGRSPAALPRLVLVVATLCLLSAPNTVVLRVDAQSRDCSDLLLACDESDFCSACLASTSEPAYAACESALPSDLFVCQYAEYNVCCYNEASGNDCVGDPVTYAYLECLWDTTDSCEDDDWTCSGSFTAAPTPAPSELTVSASVAPTA 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14506.3465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FST4_ECTSI5.950e-7270.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7K6_9PHAE3.890e-5166.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FST2_ECTSI3.770e-3866.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRJ7_9PHAE4.860e-3155.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FST6_ECTSI3.220e-2340.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14506contigEcto-sp13_S_contig14506:2..1923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size996
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_001560.1
Cds size996
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.3987954-CDS-Ecto-sp13_S_contig14506:1..1341681462774.3987954-CDS-Ecto-sp13_S_contig14506:1..134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14506 2..134 -
1681462774.4111063-CDS-Ecto-sp13_S_contig14506:242..9841681462774.4111063-CDS-Ecto-sp13_S_contig14506:242..984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14506 243..984 -
1681462774.4310393-CDS-Ecto-sp13_S_contig14506:1802..19231681462774.4310393-CDS-Ecto-sp13_S_contig14506:1802..1923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14506 1803..1923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14506.3465.1prot_Ecto-sp13_S_contig14506.3465.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14506 2..1923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14506.3465.1

>prot_Ecto-sp13_S_contig14506.3465.1 ID=prot_Ecto-sp13_S_contig14506.3465.1|Name=mRNA_Ecto-sp13_S_contig14506.3465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=332bp
MARTPATHPRLASLYLLVAVTLVLLHADAQRDCTAPSQACVESGVCTECT
FFISGDSFVDCAAGIGAEIGSCEYTEQLACCVNEVSGIDCVGDPVTFEFL
ECFYDPTEACDGDWTCSGDTTNGGDTTPAPVAASGTDTPVAGGGGGGGAE
TTAPAAPTATTTSAGIDDTMAPSATDGGESPAPTASTTSAGVDDTMAPSS
ADGGVEPAPTATTTSAGVDDTMAPSATDGGMSPAPTASTNSTGGEETMAP
SSADGDRALDITPAPSPAAALPSATTTTTSMAGESETIETMAPTAAGDGD
RDMDVTPSPVTGEAGGSSAPTTSGADETEAPT
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mRNA from alignment at Ecto-sp13_S_contig14506:2..1923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14506.3465.1 ID=mRNA_Ecto-sp13_S_contig14506.3465.1|Name=mRNA_Ecto-sp13_S_contig14506.3465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1922bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14506:2..1923- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGCACTCCAGCAACCCACCCTCGCCTCGCGTCGCTCTACCTCCT
GGTAGCCGTTACCCTGGTCTTGCTGCACGCCGACGCGCAGAGAGACTGCA
CGGCACCCTCACAGGCATGCGGTGAGTGTAACTTGCGAAACTCCGGCACG
CTGAGTTTTGTTTGTTTCCGATCAAATGGAGTGGGGGGGTGAAGAATGCT
GACCGCCCCCCAGTGCTCCAAACGGCGTGGGAATCACGCCGACGAACCCA
CCCACCCCTTCAAACGAGTAGGTGTGCACGGGGAGCATTGCTTGGTGCAG
AAAGTAACTTTGTTTGAAGACTAACACTGGTGCAGCCCGCCACCGTCGAG
TTCAATATTTTTTGCGAAAACACGACCCTCTCGCTTTGCTTTTGGAACGC
ATGACCATGTCGCTTCGCACACTGTTGAGACATGTTTCTTCCGAATCGCA
GTTGCGTAGCAGGTGTGAATCATATCAATGTGGCGTGTGTTAGTAAATAG
GAGCATTGTAGCGTTTGGATCTGAAAACGCCACTCGTAACCCCAGGGGAG
GGTAAAGCCTCGTCGCGCGGGACCCTGACGAGAAGCACTCACCCCTCCCT
GCCCGGACTTCGAAAGAGCGTGAAAAACCGAGCGCTTCTTCGAGGAGGTT
CGCCTCTTGAATGTAGTGGTACTACTTCGGAACGTACTTTCATTCCGCCT
CGGCGTCAGATCCCTCCAAGTTACGGTTTAGATTATTAAAAAGAGCCTTG
GAAAGACCATGGCTCTTGTCACACCCCTTGCAAGCGCTGGAGACAAAAGG
TTCATGACGCAAGGTGAACACGACAGGTACACAAGAGTATCAACCGCACC
GGAGAGCCGTTCCTTCCAACGCAACAGCTGTAGTAGTATGTTGACCCCTG
CCTTGTCGAATTCCCCCCCTTCGATAACCTGTCTCTCAGTTGAGAGCGGC
GTCTGCACTGAGTGCACCTTCTTCATCTCGGGTGACTCCTTCGTGGACTG
CGCGGCGGGCATCGGCGCCGAGATCGGCTCCTGCGAGTACACCGAGCAGC
TGGCGTGCTGCGTGAACGAGGTCTCCGGCATTGACTGCGTGGGCGACCCG
GTTACCTTCGAGTTCCTCGAGTGCTTCTACGACCCGACAGAGGCATGCGA
CGGGGACTGGACGTGCAGCGGCGACACCACCAACGGCGGCGACACGACCC
CGGCCCCGGTCGCCGCTTCCGGGACGGACACGCCTGTCGCCGGCGGCGGC
GGCGGCGGCGGGGCTGAGACCACTGCGCCCGCCGCGCCGACTGCTACTAC
GACTTCGGCCGGGATAGATGACACCATGGCGCCCTCCGCCACCGACGGTG
GCGAGTCGCCCGCGCCGACTGCTTCCACGACTTCGGCCGGCGTAGATGAC
ACCATGGCCCCGAGTTCCGCAGACGGCGGCGTGGAGCCCGCGCCGACTGC
TACTACGACCTCTGCCGGCGTAGATGACACCATGGCGCCCTCCGCCACCG
ACGGCGGCATGTCGCCCGCGCCGACTGCTTCTACGAATTCTACCGGCGGA
GAGGAGACCATGGCCCCGAGTTCCGCAGACGGCGACCGCGCGTTGGACAT
CACACCCGCCCCTTCTCCTGCCGCTGCTTTGCCGTCCGCTACTACTACGA
CTACGTCGATGGCCGGCGAGAGCGAGACGATGTCGCCGACGGCCACCGGC
GACGGCGAGAGCCGGACGATGTCGCCGACGGCCACCGGCGACGGCGATAG
TGGGACGATGGCGCCGACGGCCACCGGCGACGGCGAGAGCGAGACGATGG
CGCCGACGGCCGCCGGCGACGGCGACCGCGATATGGACGTCACCCCCTCC
CCCGTCACAGGCGAAGCCGGCGGAAGTTCCGCCCCTACCACTTCCGGAGC
TGACGAGACCGAAGCGCCCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14506:2..1923-

>mRNA_Ecto-sp13_S_contig14506.3465.1 ID=mRNA_Ecto-sp13_S_contig14506.3465.1|Name=mRNA_Ecto-sp13_S_contig14506.3465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14506:2..1923- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGCACTCCAGCAACCCACCCTCGCCTCGCGTCGCTCTACCTCCT
GGTAGCCGTTACCCTGGTCTTGCTGCACGCCGACGCGCAGAGAGACTGCA
CGGCACCCTCACAGGCATGCGTTGAGAGCGGCGTCTGCACTGAGTGCACC
TTCTTCATCTCGGGTGACTCCTTCGTGGACTGCGCGGCGGGCATCGGCGC
CGAGATCGGCTCCTGCGAGTACACCGAGCAGCTGGCGTGCTGCGTGAACG
AGGTCTCCGGCATTGACTGCGTGGGCGACCCGGTTACCTTCGAGTTCCTC
GAGTGCTTCTACGACCCGACAGAGGCATGCGACGGGGACTGGACGTGCAG
CGGCGACACCACCAACGGCGGCGACACGACCCCGGCCCCGGTCGCCGCTT
CCGGGACGGACACGCCTGTCGCCGGCGGCGGCGGCGGCGGCGGGGCTGAG
ACCACTGCGCCCGCCGCGCCGACTGCTACTACGACTTCGGCCGGGATAGA
TGACACCATGGCGCCCTCCGCCACCGACGGTGGCGAGTCGCCCGCGCCGA
CTGCTTCCACGACTTCGGCCGGCGTAGATGACACCATGGCCCCGAGTTCC
GCAGACGGCGGCGTGGAGCCCGCGCCGACTGCTACTACGACCTCTGCCGG
CGTAGATGACACCATGGCGCCCTCCGCCACCGACGGCGGCATGTCGCCCG
CGCCGACTGCTTCTACGAATTCTACCGGCGGAGAGGAGACCATGGCCCCG
AGTTCCGCAGACGGCGACCGCGCGTTGGACATCACACCCGCCCCTTCTCC
TGCCGCTGCTTTGCCGTCCGCTACTACTACGACTACGTCGATGGCCGGCG
AGAGCGAGACGATCGAGACGATGGCGCCGACGGCCGCCGGCGACGGCGAC
CGCGATATGGACGTCACCCCCTCCCCCGTCACAGGCGAAGCCGGCGGAAG
TTCCGCCCCTACCACTTCCGGAGCTGACGAGACCGAAGCGCCCACC
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