mRNA_Ecto-sp13_S_contig14496.3456.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14496.3456.1
Unique NamemRNA_Ecto-sp13_S_contig14496.3456.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14496.3456.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 6.020e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    4 ESPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRARSFYTR 198
            ESPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRARSFYTR
Sbjct:  398 ESPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRARSFYTR 462
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BLAST of mRNA_Ecto-sp13_S_contig14496.3456.1 vs. uniprot
Match: A0A7V2CK27_9BACT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7V2CK27_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 4.270e-5
Identity = 22/63 (34.92%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    7 SPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRARSFYT 195
            +P + +A+NNL + L    Q++E L++L+++   +P   D   NLG+H+ E GD +RAR  ++
Sbjct:  440 NPHSWMAMNNLAMLLAGSHQENEKLALLKRAVRTNPDFADAHNNLGVHYLERGDTERARHHFS 502
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14496.3456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUH1_ECTSI6.020e-36100.00Putative methyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A7V2CK27_9BACT4.270e-534.92Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14496contigEcto-sp13_S_contig14496:3690..3896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score137.1
Seed ortholog evalue3.1e-30
Seed eggNOG ortholog2880.D7FUH1
Model size207
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Cds size207
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462773.598691-CDS-Ecto-sp13_S_contig14496:3689..38961681462773.598691-CDS-Ecto-sp13_S_contig14496:3689..3896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14496 3690..3896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14496.3456.1prot_Ecto-sp13_S_contig14496.3456.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14496 3690..3896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14496.3456.1

>prot_Ecto-sp13_S_contig14496.3456.1 ID=prot_Ecto-sp13_S_contig14496.3456.1|Name=mRNA_Ecto-sp13_S_contig14496.3456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
RESPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIH
WQEDGDLDRARSFYTRQV*
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mRNA from alignment at Ecto-sp13_S_contig14496:3690..3896-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14496.3456.1 ID=mRNA_Ecto-sp13_S_contig14496.3456.1|Name=mRNA_Ecto-sp13_S_contig14496.3456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14496:3690..3896- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAATCTCCAAAGAACTGTGTTGCGCTAAACAATCTAGGAGTGGCGCT
ACTGGCTCTCGGCCAGCAGGACGAGGGATTATCCATGCTGGAAAAGTCCT
TCGAGCTCGACCCCTTCGAACCGGACGTGTTGGTCAACCTCGGCATACAC
TGGCAAGAGGACGGGGATTTAGATCGTGCTCGGTCGTTCTACACCAGGCA
AGTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14496:3690..3896-

>mRNA_Ecto-sp13_S_contig14496.3456.1 ID=mRNA_Ecto-sp13_S_contig14496.3456.1|Name=mRNA_Ecto-sp13_S_contig14496.3456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14496:3690..3896- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAATCTCCAAAGAACTGTGTTGCGCTAAACAATCTAGGAGTGGCGCT
ACTGGCTCTCGGCCAGCAGGACGAGGGATTATCCATGCTGGAAAAGTCCT
TCGAGCTCGACCCCTTCGAACCGGACGTGTTGGTCAACCTCGGCATACAC
TGGCAAGAGGACGGGGATTTAGATCGTGCTCGGTCGTTCTACACCAGGCA
AGTGTAA
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