mRNA_Ecto-sp13_S_contig14490.3453.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14490.3453.1
Unique NamemRNA_Ecto-sp13_S_contig14490.3453.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: D7G3W6_ECTSI (Protein disulfide isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W6_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 8.570e-165
Identity = 266/306 (86.93%), Postives = 277/306 (90.52%), Query Frame = 1 
Query:    1 YRLVEEEGVLVLGADDFEKATDRFMMMLVLLYTPGCKGCDAMMEEYLEASDELYEHRVPAAKVDCFLQAELCQQPQWSEAASXXXXXXXXXXXXXXXXXXXXVVVDGKTPMLFVIRKGEVFGYDGDAAASSAAEMVQFVKVVAEIGGEALPDDDYEDDDD--GLGXXXXXXXDEVDESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFLAGEEEVG 912
            YRLVEEEGVLVLGA DFE+ATD FMMMLVLLYTPGC+GCDA+MEEY+EASDELYEH VP AKVDCFLQAELCQQPQWSEAASXXXXXXXXXXXXXXX     VVVDGKTPMLFVIRKGEVFGYDGDAAASSAAEMVQFV+VVAEIGGEAL DD+ E      GLG       DEVDESSVLVLD+SNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAK +DCT NEDLCASEPWQITKYPTIMLRRFG+LYEYDQAREARELVRYMRKA EP PK+LAG+ EVG
Sbjct:  119 YRLVEEEGVLVLGAHDFERATDHFMMMLVLLYTPGCEGCDAVMEEYIEASDELYEHLVPVAKVDCFLQAELCQQPQWSEAASXXXXXXXXXXXXXXXPADGVVVVDGKTPMLFVIRKGEVFGYDGDAAASSAAEMVQFVRVVAEIGGEALADDEDEXXXXXXGLGDDNYGDGDEVDESSVLVLDESNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAK-IDCTTNEDLCASEPWQITKYPTIMLRRFGELYEYDQAREARELVRYMRKAAEPAPKYLAGDREVG 423
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A6H5KJP1_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP1_9PHAE)

HSP 1 Score: 412 bits (1059), Expect = 8.360e-137
Identity = 271/415 (65.30%), Postives = 281/415 (67.71%), Query Frame = 1 
Query:    1 YRLVEEEGVLVLGADDFEKATDRFMMMLVLLYTPGCKGCDAMMEEYLEASDELYEHRVPAAKV----------------------DCFLQAELCQQPQWSEAASXXXXXXXXXXXXXXXXXXXX---VVVDGKTPMLFVIRKGEVFGYDGDAAASSAAEMVQFVKVVAEIGGEALPDDDYEDDDDGLGXXXXXXXDEVDESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAK-----------------------------------------------------------------------------------------------KVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPK 885
            YRLVEE+GVLVLG  DFE+ATDRF+MMLVLLYTPGCKGCDA+MEEYLEASDELYE+ VPAAKV                      DCFLQAELCQ+PQWSEAASXXXXXXXXXXXXXXXXXXXX   VVV+GKTPMLFVIRKGEVFGYDGDAAASSAAEMVQFVKVVAEIGG+AL DDD E       XXXXXXX EVDESSVLVLDQSNIDQALEDADG GGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAK                                                                                               KVDCTANEDLCASEPW+ITKYPTIMLRRFGKLYEYDQAREARELVRYM+KATEPVPK
Sbjct:  111 YRLVEEDGVLVLGVHDFERATDRFIMMLVLLYTPGCKGCDAVMEEYLEASDELYEYLVPAAKVLYVQGSAWRVGLKGRLEGSTEVDCFLQAELCQRPQWSEAASXXXXXXXXXXXXXXXXXXXXXXXVVVNGKTPMLFVIRKGEVFGYDGDAAASSAAEMVQFVKVVAEIGGDALADDDGEXXXXXXXXXXXXXX-EVDESSVLVLDQSNIDQALEDADGVGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKVVICRFLAVAKRKQVNGLVKKKKKRFWDEVVQKANGGLEGNVKQMWEGIGGMDDRRPTEVLLRFLHRASSFPPVMRLPSAISRVLLATLSPPYPEKVDCTANEDLCASEPWEITKYPTIMLRRFGKLYEYDQAREARELVRYMKKATEPVPK 524
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A1S3K0F5_LINUN (Protein disulfide-isomerase n=3 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K0F5_LINUN)

HSP 1 Score: 96.3 bits (238), Expect = 1.460e-18
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 1 
Query:  523 ESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFLAGEEE 906
            E  VLVL   N D  +E         +L+EF+APWCG+C  L P YA+AA ALK+EGS  +L K +D T    +  +E ++I  YPT+   R GK  EY   R + E+V +++K T P  K L+G EE
Sbjct:   51 EEDVLVLGNDNFDSVIESTK-----FILVEFYAPWCGHCKALAPEYAKAAKALKEEGSDIKLGK-LDATVETSV--AEKFEIRGYPTLKFFRDGKPVEYQGGRTSTEIVNWLKKKTGPPAKALSGVEE 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A3P6U8Q8_LITSI (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6U8Q8_LITSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.590e-18
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 1 
Query:  517 VDESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFLAGEEEV 909
            V+E  VLVL + N D  +   +      +L+EF+APWCG+C  L P YA AA  LKKE SP +LAK  D T +  L +   +++  YPT+ L R GK  EY   R A  +V +++K T P  K +   ++V
Sbjct:   72 VEEDGVLVLTEDNFDDTIAAHE-----FILVEFYAPWCGHCKALAPEYAEAAQLLKKEDSPIKLAK-CDATVHGKLASK--YEVRGYPTLKLFRSGKPQEYGGGRSAASIVAWLKKKTGPAAKTMLSGDDV 194
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A097IYF9_ANISI (Protein disulfide-isomerase n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A097IYF9_ANISI)

HSP 1 Score: 93.6 bits (231), Expect = 1.040e-17
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:  523 ESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFLAGEEEV 909
            E +V+V+ + N+D+ +      G   +L+EF+APWCG+C  L P YA+AA ALK+EGS  +LAK   C A +    ++ +++  YPT+   R GK  EY   R+   ++ +++K T PV K L   ++V
Sbjct:   23 EDNVIVITKDNLDEVVN-----GHQFVLVEFYAPWCGHCKALAPEYAKAATALKEEGSEIKLAK---CDATQHDTVAQKFEVRGYPTLKFFRNGKPTEYGGGRDKASIIAWLKKKTGPVAKTLETSDDV 143
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A1I7UHZ1_9PELO (Thioredoxin domain-containing protein n=1 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7UHZ1_9PELO)

HSP 1 Score: 88.6 bits (218), Expect = 1.140e-17
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 1 
Query:  517 VDESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFLAGEEEV 909
             D  +VLVL +SN ++A+      G   +L++F+APWCG+C  L P+Y  AAD LK+EGS  +LAK VD T N+ L +   +++  YPTI+  + GK  +Y   R   ++V +++K + P    +   E++
Sbjct:   20 ADSENVLVLTESNFEEAIN-----GNEFVLVKFYAPWCGHCKSLAPKYDEAADQLKEEGSDIKLAK-VDATENQALASK--YEVRGYPTILYFKSGKPTKYTGGRATSQIVDWVKKKSGPTVVTIESAEQL 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A1B6MND6_9HEMI (Thioredoxin domain-containing protein n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6MND6_9HEMI)

HSP 1 Score: 87.0 bits (214), Expect = 3.450e-17
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = 1 
Query:  517 VDESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFL 891
             ++  VLV  + N  + L + +      +L+EF+APWCG+C  L P Y +AA++LKK GSP +LAK VD T   +L  +E   +  YPT+   R G    Y   R A+++V ++ K T PV K L
Sbjct:   22 TEDEGVLVFTKDNFKEGLSENE-----FVLVEFYAPWCGHCKALAPEYVKAAESLKKAGSPIKLAK-VDATQESEL--AEEHGVRGYPTLKFFRNGAAIPYGGGRSAKDIVSWLTKKTGPVAKEL 138
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A1S0S010_BRUMA (Protein disulfide-isomerase n=9 Tax=Onchocercidae TaxID=6296 RepID=A0A1S0S010_BRUMA)

HSP 1 Score: 91.7 bits (226), Expect = 4.830e-17
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1 
Query:  523 ESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFLAGEEEV 909
            +  VLVL + N D  +   +      +L+EF+APWCG+C  L P YA+AA  LKKE SP +LAK  D T + +L +   +++  YPT+ L R GK  EY   R+A  +V +++K T P  K +   ++V
Sbjct:   28 DEGVLVLTKDNFDDTVAAHE-----FILVEFYAPWCGHCKALAPEYAKAAQLLKKEESPIKLAK-CDATVHGELASK--YEVRGYPTLKLFRSGKPQEYGGGRDAASIVAWLKKKTGPAAKTILSADDV 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A1B6FNJ8_9HEMI (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6FNJ8_9HEMI)

HSP 1 Score: 88.6 bits (218), Expect = 8.310e-17
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = 1 
Query:  517 VDESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFLAGEEE 906
             ++  VLVL + N  + LE+        +L+EF+APWCG+C  L P Y +AA++LKK GSP +LAK VD T   +L  +E   +  YPT+   R G    Y   R A+++V ++ K T P  K L   E+
Sbjct:   22 TEDEGVLVLTKDNFKEGLENE------FILVEFYAPWCGHCKALAPEYVKAAESLKKAGSPIKLAK-VDATQESEL--AEEHGVRGYPTLKFFRNGVAVPYGGGRSAKDIVSWLTKKTGPAAKELENLEQ 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Match: A0A834XVJ6_9HYME (Protein disulfide-isomerase n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834XVJ6_9HYME)

HSP 1 Score: 90.5 bits (223), Expect = 1.170e-16
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 1 
Query:  523 ESSVLVLDQSNIDQALEDADGGGGGALLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCASEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFL 891
            E  VLVL   N D A++  D      +LLEF+APWCG+C  L P YA+AA AL K+GS  +LAK +D T    L  +E   +  YPT+   + G L +Y+  R+A +++ ++ K T P  K L
Sbjct:   24 EEEVLVLTTKNFDDAVKQFD-----YILLEFYAPWCGHCKALAPEYAKAAQALAKDGSEVKLAK-IDATKEPSL--AEKHGVRGYPTLKFMKKGNLIDYNGGRQADDIINWVTKKTGPPAKEL 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14490.3453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3W6_ECTSI8.570e-16586.93Protein disulfide isomerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJP1_9PHAE8.360e-13765.30Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A1S3K0F5_LINUN1.460e-1842.19Protein disulfide-isomerase n=3 Tax=Lingula unguis... [more]
A0A3P6U8Q8_LITSI2.590e-1839.69Thioredoxin domain-containing protein (Fragment) n... [more]
A0A097IYF9_ANISI1.040e-1737.21Protein disulfide-isomerase n=1 Tax=Anisakis simpl... [more]
A0A1I7UHZ1_9PELO1.140e-1736.64Thioredoxin domain-containing protein n=1 Tax=Caen... [more]
A0A1B6MND6_9HEMI3.450e-1738.40Thioredoxin domain-containing protein n=2 Tax=Cica... [more]
A0A1S0S010_BRUMA4.830e-1738.76Protein disulfide-isomerase n=9 Tax=Onchocercidae ... [more]
A0A1B6FNJ8_9HEMI8.310e-1738.46Thioredoxin domain-containing protein (Fragment) n... [more]
A0A834XVJ6_9HYME1.170e-1640.65Protein disulfide-isomerase n=1 Tax=Aphidius gifue... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14490contigEcto-sp13_S_contig14490:132..4278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score491.5
Seed ortholog evalue2.8e-136
Seed eggNOG ortholog2880.D7G3W6
Model size912
KEGG koko:K09580
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
Ec32 ortholog descriptionProtein disulfide isomerase
Ec32 orthologEc-09_001660.1
EC5.3.4.1
Cds size912
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462773.4199965-CDS-Ecto-sp13_S_contig14490:131..1581681462773.4199965-CDS-Ecto-sp13_S_contig14490:131..158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14490 132..158 -
1681462773.4325497-CDS-Ecto-sp13_S_contig14490:429..6001681462773.4325497-CDS-Ecto-sp13_S_contig14490:429..600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14490 430..600 -
1681462773.4410863-CDS-Ecto-sp13_S_contig14490:1224..14221681462773.4410863-CDS-Ecto-sp13_S_contig14490:1224..1422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14490 1225..1422 -
1681462773.4514294-CDS-Ecto-sp13_S_contig14490:2433..27631681462773.4514294-CDS-Ecto-sp13_S_contig14490:2433..2763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14490 2434..2763 -
1681462773.4675527-CDS-Ecto-sp13_S_contig14490:4092..42781681462773.4675527-CDS-Ecto-sp13_S_contig14490:4092..4278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14490 4093..4278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14490.3453.1prot_Ecto-sp13_S_contig14490.3453.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14490 132..4278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14490.3453.1

>prot_Ecto-sp13_S_contig14490.3453.1 ID=prot_Ecto-sp13_S_contig14490.3453.1|Name=mRNA_Ecto-sp13_S_contig14490.3453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
YRLVEEEGVLVLGADDFEKATDRFMMMLVLLYTPGCKGCDAMMEEYLEAS
DELYEHRVPAAKVDCFLQAELCQQPQWSEAASAAAAAGGGGGNDTASPPA
DDVVVDGKTPMLFVIRKGEVFGYDGDAAASSAAEMVQFVKVVAEIGGEAL
PDDDYEDDDDGLGDDDYGDGDEVDESSVLVLDQSNIDQALEDADGGGGGA
LLLEFFAPWCGNCNRLRPRYARAADALKKEGSPARLAKKVDCTANEDLCA
SEPWQITKYPTIMLRRFGKLYEYDQAREARELVRYMRKATEPVPKFLAGE
EEVG
back to top

mRNA from alignment at Ecto-sp13_S_contig14490:132..4278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14490.3453.1 ID=mRNA_Ecto-sp13_S_contig14490.3453.1|Name=mRNA_Ecto-sp13_S_contig14490.3453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14490:132..4278- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCGCCTTGTGGAGGAGGAAGGCGTCTTGGTTCTAGGGGCCGACGATTT
CGAGAAGGCCACCGACCGCTTCATGATGATGCTCGTGCTGCTCTACACCC
CCGGGTGCAAAGGCTGCGACGCTATGATGGAGGAGTACCTCGAGGCCTCG
GACGAGCTCTACGAGCACCGTGTTCCCGCGGCTAAGGTACTGTATGTGCA
GGGGTCGGCTTGAAGGTATACGTAGCGTCAGACGGCCTTCACGGGCACCT
TGACATTCCCGTGGCGAAAGCATGCGCAGGGTCGGTTTGAAGGTTTGCGT
AGGGTCCGGTGACTTTTACGAGCACCTCGGTATTCCCGTAGCTATCGTAT
GGGCAGGGTCGGCTTGAAGGTATACGTGGCGTCCGACGGCCTTCACGAGC
ACCTTAGTGTTCCCGTGGCTAAAGTGTGCGCAGGCTCGGCTTGAAGGTTT
GCGTAGCGTCCGATGGCTTTTACGTGCACCTTGGTATTCCCGTGGCTGGG
GTATCCGCAGGGCCGGCTGAGGTAGGCATGTCCAGCAGGGGTGTGCGCCG
GGTAGAGCAGCGGCCGACGCGTTTTACGAGCACCTTGTATTCGTGGCTAA
GGTGTGCGCAGGGTCGACTGAGGTAGGTATGCCCAGGGTGGTGGTGGATA
CATCGTACGTGTACACAGGAGAAGCTCGGGGAGGCCACCGATCGATGGGA
GTTTTCTGTGCGTGCCTCTGAGAAAGGGTAGATTGTCAAGGGAACGGGAG
TACAGAAGTTTTGCCAGTGCCTGAAGGTATCTTCCGGCGAAACTACTGCT
GGTACTGTTACTCGAAGTATGCGTACAACAATCATTCCGTGTAAGCCAAT
CCGTGTGTTGTGTCGTAAGCCAATCCGTGGCGCAGTAGCCGCAGGCGTAT
GTTTCTTTTGCTACGGACCAGGAAATGGACGTCCGTTTGAGGTACATGGC
TTGGGAGGTCCAATGGTACACCTGCATCCGACGGTATGCATGTGTACCTG
ATCCCCGTTGCTCAAAGGATCGAGACAGAAGAGTGTTGATCGAAAGGTAC
ATGGGCTGTAAAATAGCCGCAGCTACTAAAAAACGCCTTGTGTATTCCTT
TGTAGATGGCGTACAAGGATTTGGAATCATACAACCTCGAGCTTGATCCC
CCAAGGGCGTGGTACCCACCTCTGCATGCCGCCCGCGGTCTGGACAAACA
TAGGGTTGCAGTGATATGAGATCCATCCCGCCCATCGTGCACCTACCCAA
ACGTCACAACCTGAAACCACACACAGCACCCGCCGCCATAGCACGGCCTC
AGACCCACCCAACCTCAAGAGGCCGCTGTTTTTTCTTTCCTAGAGGGGCA
AGGCGACGACGATAATGCTTGCTGTCAACAGGCCGCCGTTTTCTTGGGCA
CGACGACGATGCTTGCTCTCTTTTTGCACCCAACCTCGAGAGGCTTATCG
TTCTTCTCTCTTGGGCACGGACGGTGCTTGCTCGCTCTCTTGCTTGTTGC
TGCCAACGGCGGCAGGTGGACTGCTTCCTGCAGGCGGAGCTGTGCCAGCA
GCCCCAGTGGAGCGAGGCCGCCTCCGCAGCTGCCGCCGCTGGCGGCGGCG
GCGGCAACGACACCGCTTCACCTCCGGCGGATGATGTCGTCGTGGATGGA
AAGACGCCGATGCTGTTCGTGATTCGGAAGGGGGAGGTGTTCGGCTACGA
CGGGGACGCGGCCGCCTCGAGCGCTGCCGAGATGGTGCAGTTCGTGAAGG
TTGTGGCCGAGATCGGCGGGGAGGCTCTCCCTGACGATGACTATGAGGAC
GATGATGACGGTTTGGGCGACGACGACTACGGGGATGGCGATGAGGTGTG
GGTGTGTAGGGTTGTGCTGGCATCGACGGAGTTATCCGGCTGACCAATAA
AAATGCGTCAAGTCTTGGCCCGGGATGGTGTGCGTTTGTGTGTTGTTTGT
GAAAAAGCATAGACCGAGCTAACCGACTGACCAATGCTTCAGTCTTGGAG
CGGGATAGTGTGCGTTTGTGTGTATTTCGTGAATTGGCATCGACCACGCT
ACCCGGCTGACCAATGAAAATACGTCAGTCTTGGAGAGGATGGTGCGCGT
TTATGTGCTTTTTGACATGGCATCGACCTTGCTAACCGGCTGACCAATGA
AAATGCGTCAAGTGTTGGAGCGGGGTAGTGTGCGTTTGTCTTATTTTTTG
GAAATAGCATCGACCGCACTACCCGGCTGACCAATGAAAATACGACGGTC
CCGGAACGGGATGGCGTGCGTTTGTGTGTGTTTTTTGTGAAATAGCATCG
ACCGCGCTCGCTAGCTGACCGATGAAAATGTGTCAAGTCTTGCAAGGGAT
CGTGCGCGTTTGTGTGTTTTTTGAATTGGCATCGACGTTCCTAACCGGCT
GACCAATGAAAATACGTCGGTATCGGAGCGGGATAGTGCGTGTTGGTGTA
TTTTTCGTGAAATAGCATCGACCGAGCTATCCGGCTGATGAATGAAAGTA
CGTCAGTCTTGTAGCGGGATAGTGTGCGTTTGAGTGTTTGTTGTGAATTG
TCATCGACCGCGCTCACCGGCTGATGAATTAACCCGCGTCAGTCTTAACG
CAGTGCGCTAAGATAGCGTGATCTCTCTCCGGCCTATCGGAGAGTGAACA
CATCTCTCGCTTTAATCGACACCGTCCCCGTCCTTCTCCTTGGCGCAGGG
AGCAAAAATCGACACTGCGCAACTTCGTGTTGCGATGCGCTACCTATGCT
ACATCTCGGGTGTCACTTTTTCACCGCGGAAAATTCTACCGCAGGCTTTG
ACGGTAAACCCATCGCTCTCTCCGTCCCCCCCCGACATCATCGTCATCAT
CGTCAGGTGGACGAGAGCAGCGTGCTGGTGCTAGACCAGTCGAACATCGA
CCAGGCGCTCGAGGACGCCGACGGGGGGGGTGGCGGCGCCCTCCTGCTGG
AGTTCTTCGCCCCCTGGTGCGGGAACTGCAACCGCCTCCGGCCGCGCTAC
GCCCGCGCCGCCGACGCGCTCAAGAAGGAAGGGAGCCCCGCTCGCCTCGC
AAAGGTGTGTGTGTGTGTTTGCTGTGGTTGGTTGACTTTGTTGGTGGTGC
AGGTGGTGGTCTGCTGTATTCTTGTAGTGTTTGTTGCTGTCGCTGCTGTC
GTTGTTGTCGCTGCTGTCGTTGTTGTCGCTGCTGTCGTTGTTGTTGATGC
TGATGTAAGGTTGCCCCCCCCCCTCAGCCGTGGTGCAGGTGCCTCCTTCT
CGTTAAGAGGTGGCATAAATATTTGTCGGGTTGTCTTTGTTCTTCCTCTT
CTTCTCTTTGTTAACCCGTCTGCCTGTCTGTCTTTCCGCTGGTACCTCTT
CTGACTTCTGACGTGTCCACGTCCCCGTCGACGTCCTGCCTTCGCCAACA
CCAATCATTAGAAGCACAACAGCTGAGTCAACTCAAACACGTGCTGTGTT
CTTCGAATAGTTTTCAACTTCTGAACCTAATACTTGTTCACGCGTACCCT
CCCCAAGCCGTCGATTCCATTGAATGCACGCATGCACTCAGGGCGATAGA
CGACCGACCAAGGCTTTGCGCCGTTTTCTTGATCGCGCATCGTTTTTTCC
TCCCGTCATGCGTCTTCCCCCCCTCCCGCCATCTCGCGTATCTTGCTTGC
AACTCTGTCCCCCCACCTTTTCCACGAGAAGGTCGACTGCACAGCGAACG
AAGACTTGTGCGCTAGCGAGCCTTGGCAAATCACCAAGTACCCGACGATA
ATGCTGAGGAGGTTCGGCAAGCTGTACGAGTACGACCAGGCCCGCGAGGC
GAGGGAGCTCGTGCGGTACATGAGGAAGGCCACGGAGCCGGTACCCAAAG
TGAGAAGAGAGAGGTTTTGTTCATTGATAGCCCTATCAGTTTTGTTCATT
GATAGCCCTATCGCAGGCTCTTTTTTCATCCGTGATTGGGATGGTAGTTG
TTTGGTACTTAACGTAAGTACGAAGAGGCAGGGCGTCGAGCTACTACAAC
GGTACGTGTTGACATGAGTGCAATACCCCCGGCGCTGTGTCTGGTTCCAC
TCGAACAATTCTCCGTAACCGACCGCCCTTTTTGAAAACACGGAACCCCC
CCCCCCACCCCAGTCCGCAGTTTTTAGCAGGCGAGGAAGAGGTAGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14490:132..4278-

>mRNA_Ecto-sp13_S_contig14490.3453.1 ID=mRNA_Ecto-sp13_S_contig14490.3453.1|Name=mRNA_Ecto-sp13_S_contig14490.3453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14490:132..4278- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCGCCTTGTGGAGGAGGAAGGCGTCTTGGTTCTAGGGGCCGACGATTT
CGAGAAGGCCACCGACCGCTTCATGATGATGCTCGTGCTGCTCTACACCC
CCGGGTGCAAAGGCTGCGACGCTATGATGGAGGAGTACCTCGAGGCCTCG
GACGAGCTCTACGAGCACCGTGTTCCCGCGGCTAAGGTGGACTGCTTCCT
GCAGGCGGAGCTGTGCCAGCAGCCCCAGTGGAGCGAGGCCGCCTCCGCAG
CTGCCGCCGCTGGCGGCGGCGGCGGCAACGACACCGCTTCACCTCCGGCG
GATGATGTCGTCGTGGATGGAAAGACGCCGATGCTGTTCGTGATTCGGAA
GGGGGAGGTGTTCGGCTACGACGGGGACGCGGCCGCCTCGAGCGCTGCCG
AGATGGTGCAGTTCGTGAAGGTTGTGGCCGAGATCGGCGGGGAGGCTCTC
CCTGACGATGACTATGAGGACGATGATGACGGTTTGGGCGACGACGACTA
CGGGGATGGCGATGAGGTGGACGAGAGCAGCGTGCTGGTGCTAGACCAGT
CGAACATCGACCAGGCGCTCGAGGACGCCGACGGGGGGGGTGGCGGCGCC
CTCCTGCTGGAGTTCTTCGCCCCCTGGTGCGGGAACTGCAACCGCCTCCG
GCCGCGCTACGCCCGCGCCGCCGACGCGCTCAAGAAGGAAGGGAGCCCCG
CTCGCCTCGCAAAGAAGGTCGACTGCACAGCGAACGAAGACTTGTGCGCT
AGCGAGCCTTGGCAAATCACCAAGTACCCGACGATAATGCTGAGGAGGTT
CGGCAAGCTGTACGAGTACGACCAGGCCCGCGAGGCGAGGGAGCTCGTGC
GGTACATGAGGAAGGCCACGGAGCCGGTACCCAAATTTTTAGCAGGCGAG
GAAGAGGTAGGC
back to top