mRNA_Ecto-sp13_S_contig14481.3447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14481.3447.1
Unique NamemRNA_Ecto-sp13_S_contig14481.3447.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14481.3447.1 vs. uniprot
Match: D7FS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS34_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 3.350e-28
Identity = 67/109 (61.47%), Postives = 73/109 (66.97%), Query Frame = 3 
Query:  165 MAQISRQEFRDDVLASQTAHLGVASRASFFDDTGSGGFGGSGKDSSDAESGDSEYNFKIAIIGPGGLGGAMLRHLKDLGDVETALIACDERGGIIRHTSPVGPIRSISG 491
            MA+ S QEF  DVLA   A LGVASR +F DDTGSG                  Y++K+AIIGPG    AMLRHLKDLGDVET LIACD RGGIIRH+SPVGPIR  SG
Sbjct:    1 MAEFSAQEFEGDVLAGAMARLGVASRKNFSDDTGSGXXXXXXXXXXXXXXXXXXYSYKVAIIGPGXXXXAMLRHLKDLGDVETVLIACDGRGGIIRHSSPVGPIRGTSG 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14481.3447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS34_ECTSI3.350e-2861.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14481contigEcto-sp13_S_contig14481:416..3183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size952
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_004510.1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.9901526-UTR-Ecto-sp13_S_contig14481:415..4871681462772.9901526-UTR-Ecto-sp13_S_contig14481:415..487Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14481 416..487 +
1681462773.0007293-UTR-Ecto-sp13_S_contig14481:1717..17671681462773.0007293-UTR-Ecto-sp13_S_contig14481:1717..1767Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14481 1718..1767 +
1681462773.0259402-UTR-Ecto-sp13_S_contig14481:2863..31831681462773.0259402-UTR-Ecto-sp13_S_contig14481:2863..3183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14481 2864..3183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462773.0088902-CDS-Ecto-sp13_S_contig14481:1767..17891681462773.0088902-CDS-Ecto-sp13_S_contig14481:1767..1789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14481 1768..1789 +
1681462773.0180109-CDS-Ecto-sp13_S_contig14481:2375..28631681462773.0180109-CDS-Ecto-sp13_S_contig14481:2375..2863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14481 2376..2863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14481.3447.1prot_Ecto-sp13_S_contig14481.3447.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14481 1768..2863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14481.3447.1

>prot_Ecto-sp13_S_contig14481.3447.1 ID=prot_Ecto-sp13_S_contig14481.3447.1|Name=mRNA_Ecto-sp13_S_contig14481.3447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MQRVFNHSRASSSIMAQISRQEFRDDVLASQTAHLGVASRASFFDDTGSG
GFGGSGKDSSDAESGDSEYNFKIAIIGPGGLGGAMLRHLKDLGDVETALI
ACDERGGIIRHTSPVGPIRSISGGLSRNSSGSSSTSWAPPAAKVLRRMSP
ELKALLAAATSSSWFRPKH*
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mRNA from alignment at Ecto-sp13_S_contig14481:416..3183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14481.3447.1 ID=mRNA_Ecto-sp13_S_contig14481.3447.1|Name=mRNA_Ecto-sp13_S_contig14481.3447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14481:416..3183+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCTGGCTTACAACGAGCTCACCATCTTGCTTGAGGGAATCTTCGGGG
GTCTTACGGCCGTGGAATCACTGGAAGTAGCTGTTCGATATGTGTTTGTC
GGTGGCATGCTTGTCCGGATGAGGTTAGCCTGCGATGGGAACACATGTGC
CACAGATCCATCGTGCCCATGACATTTAAACCCCAACTACCGCGCCGGAA
AGCAGTCGCTAGGAGTTTCTGTGAAAAGCAGTGGGGGTGCCCGAGACCAG
CTCCAACCGACGCACTGTAGTATCCCTGCGGTTATCCCGTCTACCCGCAG
CCGCTGCACTGTCTCGAAGCGGTTGAATGGATCTGTAATACACACGAATA
GGTCAATTTCAACTTGCATGTGCGTTCATTCAGCCATTTGACCATTTGGC
CGGCACATCCACCGGATGTTTGCAGTTTTTGAGGTGATCGAGAGGAAGAG
GCGATCTCGGAGTGCCTAGAAACGCGATCACCGAAGGATCGCATTTCGTA
ACGGGATAGATTGTCGTGTCCGGGGATTGGCGGTCGACCATTTTCATATT
GATGCCCGCATCGGGCGTATATCCTAATGTCTTATCCGATCCGCGATTTA
CGCATTGCAACCCTGGAACGGGTTACGACGGCCAACTCAGTCGCCTTGAC
CCTCCTAGTACTGGAAGCCCCAATGGGAACACGTTGGGAACACATTGGGC
CACAGCACTCACAGGCCTTTATACCGCACGGTAGTCACCCTCGACTCAAC
TGTGTGCAAGGCACGTGAGCACCCTTTGTCTATCATGCTTGGCTGAGATT
GTACCCTGTGTGATAAGGTTGTGATGCCTCTCGTGGGCCTCTGACTTGCT
GTACACATCTCCCCACCCGCGTGCCCCCTGGGTCGTAACACTGTGCATCG
CCTGGTGCTGGAAAAATTTGCTGACTTGACTTCAGTATCATGTGATGCTG
GAGCCAAGTCGCCCTTTGTCTGGCAAGGAGCTCAGATTCTTTGAAGGGAC
TGTAGCCCTCGACCAATGGCTGACAAACAGTTTTTTCGTCATTTTTTGTT
GCGCAGGGAACGGTGGGTACGAGGAGGGTTAACTTTAGCGGGACGAATAC
ATTGATTGGTATGATTGTACCTAGATCACCACGAGGCGGCTTATGCGTAG
GTGACTTTGCTACGCCACTGCAGAGAACGTCCTCTGCGCATGTTAGTGGG
CTGGCTCTGCCTTGTAGATCACCATGTGCAGCAGCAAGCACTGATTCCCC
AGCTCACGCGTGTTCTCTGCTCCGCCGGTGGCCCTCCCTCGACATCCGAA
AGATACCTGACTGACAACGAGCTCACTACCGTGCCTGAGGGAATGTTTCA
GAATGCAACGGGTCTTCAATCACTGTAAGTAGTTGTTCGATATGGCTGTG
TATCGGTAGGATGCTTTTCTGCATCGGGTCAGTCTGCGATGGAGAACACA
AGCACCAACACCAATCGTGCCCATTAACCATTCAACCCCAACGAGCGTGC
CGGAGGTAACTCACAAGACGTTCGGTGTATGAAGCAAGTGGGGGTGCCCC
AAGACTAGCTCCAACCGACGCACCGTAGTCTCGGTTCGGTCATCGCCTGT
AGCCCCTACTGCTGCATGGCTCGAAGCTGGTGCTTCGATGGGTTTGTGTG
TTGAACATACGAGTCAGTCATTTCCGATCTGGGTATGCGTTCATTCGGCC
ATTTGGCCGACACATCCATCGGATATATGCAGTTATTGAGGTGATCGAAA
GAAGGAGGCGATCTCAGAGTGGCTAGAAACGCGAGCACCCAAGTATTGCA
TGACGTAACGAGATACATGGATAGATCGTCGTTACCTGGCATTGGAGGTC
ATCACAAAAAACATCCCACCTCAAATCACCCTCGAACAAACCTGCCGCAT
ATTTTCCTCACGGCAGCATCGCCTCACCCTCTCACAACTCTCACCACCCC
TCCTCAACAGCAAGAGCATCCTCATCAATCATGGCTCAGATCTCCAGGCA
GGAATTCAGAGACGATGTGCTTGCGAGCCAGACGGCCCATTTAGGTGTTG
CTTCAAGGGCGAGCTTCTTCGATGACACTGGCTCCGGTGGCTTCGGTGGC
TCCGGTAAGGATAGCAGCGATGCGGAGTCTGGAGACTCAGAGTACAACTT
CAAAATCGCAATCATTGGGCCTGGCGGGCTTGGCGGAGCCATGCTTAGGC
ACTTGAAGGACCTCGGCGACGTCGAGACTGCCCTCATCGCCTGCGACGAA
CGCGGCGGCATCATTCGGCACACTTCACCTGTGGGCCCAATCCGGAGCAT
CTCAGGTGGGCTCAGCCGCAACAGCAGCGGCTCTTCTAGCACATCGTGGG
CTCCACCGGCGGCGAAGGTATTGCGGCGGATGTCGCCGGAACTGAAGGCA
TTGCTGGCTGCAGCCACATCTTCATCATGGTTCCGTCCCAAGCACTGAGA
AAGACGGCTGCAGAGCTTGCGCCGCACACCGCGGACGGGCAAACGGTGGT
GGTGGTCCCCGGCGGCCTCTTCATGCCCATCGTCAAAGAGTACTGGCCCA
ATGTCAACGTTTTTCATCTTGGAAGCGGACACCTCCCCCTACGCTTCAAG
GGCCACGCCAACAGCAGAGATCGACATCAACGGTATAACGAACAACATCG
CCATCGGCACATCGCAGCACACCACCAAAGAACAAAGAGATGGCATCCAA
TATCTCATCGAGGCGGGTCTATTTAGGGTCCTCTCGATCGTGATCTTCCT
TCGACACACCGGCCTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14481:416..3183+

>mRNA_Ecto-sp13_S_contig14481.3447.1 ID=mRNA_Ecto-sp13_S_contig14481.3447.1|Name=mRNA_Ecto-sp13_S_contig14481.3447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14481:416..3183+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACGGGTCTTCAATCACTCAAGAGCATCCTCATCAATCATGGCTCA
GATCTCCAGGCAGGAATTCAGAGACGATGTGCTTGCGAGCCAGACGGCCC
ATTTAGGTGTTGCTTCAAGGGCGAGCTTCTTCGATGACACTGGCTCCGGT
GGCTTCGGTGGCTCCGGTAAGGATAGCAGCGATGCGGAGTCTGGAGACTC
AGAGTACAACTTCAAAATCGCAATCATTGGGCCTGGCGGGCTTGGCGGAG
CCATGCTTAGGCACTTGAAGGACCTCGGCGACGTCGAGACTGCCCTCATC
GCCTGCGACGAACGCGGCGGCATCATTCGGCACACTTCACCTGTGGGCCC
AATCCGGAGCATCTCAGGTGGGCTCAGCCGCAACAGCAGCGGCTCTTCTA
GCACATCGTGGGCTCCACCGGCGGCGAAGGTATTGCGGCGGATGTCGCCG
GAACTGAAGGCATTGCTGGCTGCAGCCACATCTTCATCATGGTTCCGTCC
CAAGCACTGA
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