mRNA_Ecto-sp13_S_contig1035.345.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1035.345.1
Unique NamemRNA_Ecto-sp13_S_contig1035.345.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1035.345.1 vs. uniprot
Match: D8LCQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCQ3_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 6.070e-136
Identity = 204/233 (87.55%), Postives = 206/233 (88.41%), Query Frame = 1 
Query:    1 IFLDEAACVFDDASDGDGAMCARYRGYHQRIRELMGDSATVVMNTGSMITEKALTDALGRDVVWNVLENSRSSLEKDFGKVATTFTPIAKKVTTTXXXKKTWKMMLGCGGDANAVEGPKVVEGTPPAAPPHVQGRAGFMVHGATRLSYEEICHWVNQLEDGGWSHVYLTDKIYDPASDNIAHHNPWDAVPTYWTDLAKAVGEISGAVRRDXXXXXXXXXXXXXXXXXKAAVSS 699
            IFLDEAACVFDDASDGDGAMCARYRGYHQRIRELMGDSATVVMNTGSMITEKALTDALG DVVWNVLENSRSSLEKDFGKVATTFTPI KKVT T   KKTWKMMLGCGGDANAVEGPKVVEGTPPAAPPHVQGRAGFMVHGA R+SYEEICHWVNQLEDGGWSHVY+TDKIYDP SDN AHHNPWDAVPTYW DLAKAVGEISGAVRRD                 KAAVSS
Sbjct:  101 IFLDEAACVFDDASDGDGAMCARYRGYHQRIRELMGDSATVVMNTGSMITEKALTDALGPDVVWNVLENSRSSLEKDFGKVATTFTPITKKVTATTKKKKTWKMMLGCGGDANAVEGPKVVEGTPPAAPPHVQGRAGFMVHGAARMSYEEICHWVNQLEDGGWSHVYMTDKIYDPDSDNPAHHNPWDAVPTYWADLAKAVGEISGAVRRDFDDGKIPPTTAGSSSSSKAAVSS 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1035.345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCQ3_ECTSI6.070e-13687.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1035contigEcto-sp13_S_contig1035:2..4279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2695
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSpherulation-specific family 4
Ec32 orthologEc-03_002020.1
Cds size645
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1035.345.1prot_Ecto-sp13_S_contig1035.345.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1035 59..2286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462525.212517-UTR-Ecto-sp13_S_contig1035:1..581681462525.212517-UTR-Ecto-sp13_S_contig1035:1..58Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1035 2..58 +
1681462525.262369-UTR-Ecto-sp13_S_contig1035:2286..42791681462525.262369-UTR-Ecto-sp13_S_contig1035:2286..4279Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1035 2287..4279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462525.221756-CDS-Ecto-sp13_S_contig1035:58..1211681462525.221756-CDS-Ecto-sp13_S_contig1035:58..121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1035 59..121 +
1681462525.2305818-CDS-Ecto-sp13_S_contig1035:604..9311681462525.2305818-CDS-Ecto-sp13_S_contig1035:604..931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1035 605..931 +
1681462525.239524-CDS-Ecto-sp13_S_contig1035:1465..16151681462525.239524-CDS-Ecto-sp13_S_contig1035:1465..1615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1035 1466..1615 +
1681462525.248676-CDS-Ecto-sp13_S_contig1035:2181..22861681462525.248676-CDS-Ecto-sp13_S_contig1035:2181..2286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1035 2182..2286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1035.345.1

>prot_Ecto-sp13_S_contig1035.345.1 ID=prot_Ecto-sp13_S_contig1035.345.1|Name=mRNA_Ecto-sp13_S_contig1035.345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp
MCARYRGYHQRIRELMGDSATVVMNTGSMITEKALTDALGRDVVWNVLEN
SRSSLEKDFGKVATTFTPIAKKVTTTKKKKKTWKMMLGCGGDANAVEGPK
VVEGTPPAAPPHVQGRAGFMVHGATRLSYEEICHWVNQLEDGGWSHVYLT
DKIYDPASDNIAHHNPWDAVPTYWTDLAKAVGEISGAVRRDDDDGKIPPT
TAGSSSSSKAAVSS*
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mRNA from alignment at Ecto-sp13_S_contig1035:2..4279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1035.345.1 ID=mRNA_Ecto-sp13_S_contig1035.345.1|Name=mRNA_Ecto-sp13_S_contig1035.345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1035:2..4279+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTTCTTGGACGAGGCCGCGTGCGTCTTCGATGACGCCAGCGATGGGGA
CGGAGCCATGTGCGCCAGGTACAGGGGGTACCACCAGCGCATCCGGGAGC
TGATGGGAGACTCGGCAACGGTGAGACGCGAAAAATTGTTCCGACAAGAG
GTGTCTTTGTTTGAGAAGGGATCGGAAATTGACACGGTGGGCCCTGAAAG
ATAGGCTCGGCGATAGATTTTTTTCCGGATTCATGATACCTTCGTGTCCT
CCTTGGAAAATACAGGGATTGATGCAATGGTCTTTTGGTATGACTTGCCC
ACTTCCCATTCGGCGACCACGAATCCAGAGGGCATGAGCTTGTTTTCCCC
TGGACGTCCATTTTTTTCACACGAGTTAGGGTATGGATGCCTACCCAGCC
AACGGAAGCCTAGTGACAAACTCTTTCCCATTTCTAGTCGGAAGCCTAAC
GCGCCCTACGACTGTTCGGATACAGGTTGCTTCATTGTTTTTTTTTTAAT
CAATTCCGCCTCCCCCACAGCCGTACCTCCACCGCTGACGAACAAGTGAT
AGCTGTCACTCGACGCCTTCGACGACCAAAACAAACAACAAAATACGCTA
CAGGTGGTCATGAACACCGGGTCGATGATCACGGAAAAGGCCCTCACGGA
CGCCCTGGGCCGCGACGTGGTCTGGAACGTTCTCGAGAACAGCCGGTCGT
CGCTGGAGAAGGACTTCGGCAAGGTGGCCACGACCTTCACCCCCATCGCC
AAGAAGGTCACCACGACCAAGAAGAAGAAGAAGACGTGGAAGATGATGCT
CGGCTGCGGCGGCGACGCCAACGCCGTGGAGGGTCCGAAGGTGGTGGAGG
GGACCCCGCCGGCGGCACCGCCGCATGTGCAGGGGAGGGCCGGGTTCATG
GTCCACGGGGCGACGAGATTGTCGTACGAGGTGGGATGGACTTAGGAGTA
GTCCACTCGTGGGGGGAGGGGGGGGGGGGGATTTTTTTTCACGCTGGGCC
TCGTTTCGTTGTCTTCCCCTTTTGGTTGTTCGCAACCCGATGGCCGCTTT
TGGAGGTGTTGGATGCAAGCAGGGCCTGGACGATTCTTCCCACCGTTTTT
TGCGGTCGGCGTTTCATCTGTGTGTGGTTTTGTTTGTCTTCGTGTGTGAG
GTACGGGCTCGAGAGCTTTGGCGCGTTAGCGACGGGAGGTGTGTGCACAT
GTTTCTCTACCATTCATTATCCCCGAAGACCCCCTACCTACGTTCGTAGG
CAGCACGTGCGTCGTATTTGACGAAGGCAGCTCGCGCGGCGCATCCCCTC
GCCCGCGGCAGCAAGCAAAATTTGGAAGACAACTTCTGAATTTCATTGTT
CACGAACGACACGAACAGCGCAGCTACTCACCTACTATATTCCTTGCCGC
AGTACCATCCCCTCCCCTCCATTAACGTCGGAAGTTTCCCCGCCCGAACA
CGACACTCGCGCAGGAGATATGCCACTGGGTGAACCAGCTGGAAGACGGG
GGCTGGAGCCACGTCTACTTGACCGACAAGATCTACGACCCGGCCTCCGA
CAACATCGCCCACCACAACCCGTGGGATGCCGTCCCGACGTACTGGACAG
ACCTCGCGAAAGCGGTGAGTAGCTGCTGGAACTTCTTCGCTTTTCCGTAT
GTCGCGTCCTCGAAACTGAATATCAACGAATGCCCAAGACAACGATGGAG
CTCGCCCAAGCCTATTTTCAAACGCTGGCGGAACTATCAAAAAAAATTTG
CCGGTTTTCCGGTAACTCAGTAATTCGTGTTCGTTGGCCGGATCGCCGCG
GCATGGATGTGATGTCGACAACCTTCACGTTCTTGCACGAAGTCACTTTT
TGGTCGATGTATGTTGGGGAGTTTTGTTATTTGTGGAATGACCAGCGGCG
GGCTCTGACCCGGTTGCAGAAGATTTCATCTCATCGCGGTGGCACGGCAC
ACGGTAAGAGAATTCGTGAAGTGAAGAAGTGGCCCGACCTCTCGTGGTAA
CTGAGCGCTTTCTCAACTGCTTTCGACGATGCTGGTGTTGCAACGGCCTG
TAACAAGAGTTGAGGTTCATGGCGTGAAAATGCGACCCACCTTTCATTGC
GGTGTCTCAAGTGCTCATGACGATGCTACCGGCCATGCTGCTTGCTGCCG
CCGCCCATTATTCGGACGGCAATGGCACAGGTGGGGGAGATCAGCGGTGC
TGTCCGCAGAGACGACGACGACGGGAAGATCCCACCCACGACTGCGGGCT
CGTCGTCGTCATCCAAAGCCGCCGTGTCGTCCTAAGGGTCATTGGGGTCG
ACATCGAGGAGAGACAGCAGTGTTTTCCTGGGCGTTTGTGCTCATCCGTT
TGTTGTGATACGAATGCCCCCGATAAGCCTCTATACATGTCAAACCTGTA
CACCGCTATGAAAAATGGTTCAACAGTTGCGTGTTGGTGCGTGTGAGTCT
GTTTTCGGCTTGTTTGATTGTGATGGCCGTGTGGGTTTTGATTAGGTTCC
TCTGGGCTGACTCACGCTCCTCTTTGTCGGGTTCGGGTTGATCCAATACC
ACACAACCGGATTAGTGCCGAACGTCTAGGGAGAAAATGACGGTACCTCC
CACGCCCTGCTGTCTACCGTGCGTCGGGATGTTTGCTTGACTCGAGTGTT
CAATAGGTGAGACGAAAAGGCTGAGCAAGGGCTGTTGGTTGTCGTTTTTT
CCTTGATTGGTCGGGCTTTTCCTTTGTGAGCGAGGTGGCGTCGCCACCAT
AGAATCTCGGGGTAGGGAACCGGTGATTTTGGGGCGCACCGGCCCATTAC
ACTACTGCGTGTTCTCCGTGATGTGTGTTTCGCGCCGGTCACGGCACACG
AGTGCAATAATATGTCTATTTCACTCACCAAAGTAACAAAACACTTGATG
ACCATCCAGGCGAGTTGGGAACTAGAACTAGATTGGCTGGGCGGCACGCG
GGCAACACGCACCCCACGTGGGTTGGTCCTTTGTTGGGTACACTGCTTTC
ATCACCACTTTTTCTTTGTCGGACGGAAAAGTACCTTCTTCGCGTTTTGT
CGAGTGTTTTTTGTTGCCGCGGGGGGGGGCTCGGGTTTGCTGCTGTTGTT
GTGGCAGGGCTCGCGTTGTCTTTCCCCGTTGGCAAACCTCGCTGTACAGT
ATTGCGTTCTCACTCCCACACTTACCTACTGTTCGATGTTGTTGCTGTCC
GTGTGGGTGCTTTTCGATTGCCGTAGCCGGCCCTCGCGATCGTCGCTCAT
CGATCGGTGTTGGACGTTGGTGGGCTGGGGTAACAGACGATGCCCCTCCG
CCGCACACACACAACTGAGGAGCGTGTTTTGATTGTTGATCGATTTTGGG
TGCAGGTCTCTCTTGTAGGTAGGGTATGTTCGGGGACGAGACGTGGTCAC
CAACAATTCAGTGCGGATGAAAATATATTGTAGGAAAGACATGCCTTTTG
TTTTCCCTCAGGAGGTAGGGTCGAGATTCCACAACTATATGTCGCTTCTC
TCTTACACCCGTGTTTGTTCGGGCCCAAGGGGAGACGATATCAGGGAGGT
GATTGGTATTTTTTCGTATTCGTTTTGCGTGTTTAGTGAGCGCCATGCAG
GCATAGTGCAGTGACGCGTGCGACCCGATCTTGACGTTCGTTGGTGTAAC
AGCTTCAACTCGGATTGCATTTTATCCAGCTGTTTGGTTCCTCGGGATCG
CCCTCTCCAGGCCCTGCACGAAGCGGCGGATACACACACACTGGCCATGA
TTCACTTCTTTTTCACGCTCTATACCGATGACGTCTCCTTTTGGAGACAG
ACGTGGCTGCATGGAACAGACTGATATGGGTGTTTATTAAGGAGAAATTC
ACTGGGCGGGATATCGCTGTCGGTCACTCTTCGACAAAGGAAGTACATGT
ACCCGTTCTGAATGCAATTAAAATCCTCCCTCGCGTTTTTTTCCTCAGTA
ATTGTTTCGTCGAGCCCTTCGGGACACTGCGCAAGGGTGCGCAGCGGGTT
ATTTTGCTGAAACGAAAGTGTATGACGCAGTGGAGGAGAGGATGCGCGCT
CACGCACGTGGGCTGGTGGAGGCCAGCCGTATTTTCTTCGATCGGACACA
TACAAATTTGTATTTCCCACTATCTACCAATTGTTCCTTTTTCGCGTATA
GTATAGTCTACGGCTATGCTTGTCAAGGAGTTTGCTTGTTAGGAGACCTA
TGCACAGCTTTTCTTCGTTCCCTCGAGAACATGTGCTACGTGCGTTCCAT
GCTACAATGTGTACCTAAACTTTCGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1035:2..4279+

>mRNA_Ecto-sp13_S_contig1035.345.1 ID=mRNA_Ecto-sp13_S_contig1035.345.1|Name=mRNA_Ecto-sp13_S_contig1035.345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1035:2..4279+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGCCAGGTACAGGGGGTACCACCAGCGCATCCGGGAGCTGATGGG
AGACTCGGCAACGGTGGTCATGAACACCGGGTCGATGATCACGGAAAAGG
CCCTCACGGACGCCCTGGGCCGCGACGTGGTCTGGAACGTTCTCGAGAAC
AGCCGGTCGTCGCTGGAGAAGGACTTCGGCAAGGTGGCCACGACCTTCAC
CCCCATCGCCAAGAAGGTCACCACGACCAAGAAGAAGAAGAAGACGTGGA
AGATGATGCTCGGCTGCGGCGGCGACGCCAACGCCGTGGAGGGTCCGAAG
GTGGTGGAGGGGACCCCGCCGGCGGCACCGCCGCATGTGCAGGGGAGGGC
CGGGTTCATGGTCCACGGGGCGACGAGATTGTCGTACGAGGAGATATGCC
ACTGGGTGAACCAGCTGGAAGACGGGGGCTGGAGCCACGTCTACTTGACC
GACAAGATCTACGACCCGGCCTCCGACAACATCGCCCACCACAACCCGTG
GGATGCCGTCCCGACGTACTGGACAGACCTCGCGAAAGCGGTGGGGGAGA
TCAGCGGTGCTGTCCGCAGAGACGACGACGACGGGAAGATCCCACCCACG
ACTGCGGGCTCGTCGTCGTCATCCAAAGCCGCCGTGTCGTCCTAA
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