mRNA_Ecto-sp13_S_contig1447.3440.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1447.3440.1
Unique NamemRNA_Ecto-sp13_S_contig1447.3440.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1447.3440.1 vs. uniprot
Match: A0A6H5KJH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH9_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 4.000e-113
Identity = 178/190 (93.68%), Postives = 184/190 (96.84%), Query Frame = 1 
Query:    1 DKLKAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTFATKETVPPFSYLEEADMRSALGAGVQLEGIVGEQPPEEESGVEAKQRFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEGE 570
            D+L AVPWPDRALRPYD PIVDTDLPARQAKALGRLGMGSQTVI+CSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGT ATKE VP FSYLEEADMR+ALGAGVQLE I+GEQPPEEESG+EAKQRFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEG+
Sbjct:  588 DELAAVPWPDRALRPYDPPIVDTDLPARQAKALGRLGMGSQTVIVCSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTLATKEAVPAFSYLEEADMRAALGAGVQLERIIGEQPPEEESGIEAKQRFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEGQ 777
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BLAST of mRNA_Ecto-sp13_S_contig1447.3440.1 vs. uniprot
Match: D7G918_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G918_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 9.440e-112
Identity = 178/190 (93.68%), Postives = 182/190 (95.79%), Query Frame = 1 
Query:    1 DKLKAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTFATKETVPPFSYLEEADMRSALGAGVQLEGIVGEQPPEEESGVEAKQRFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEGE 570
            D+L AVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGT ATKETVP FSYL EADMR+ALGAGVQLEGIVGEQPPEEESG+EAKQRFI TIA VREEQLRDSPVLVVAHGDTL AAGESLASQIVFE +
Sbjct:  591 DELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTLATKETVPAFSYLAEADMRAALGAGVQLEGIVGEQPPEEESGIEAKQRFIVTIANVREEQLRDSPVLVVAHGDTLGAAGESLASQIVFEAD 780
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BLAST of mRNA_Ecto-sp13_S_contig1447.3440.1 vs. uniprot
Match: A0A835YJL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJL4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.570e-19
Identity = 56/124 (45.16%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:  130 IICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAE--LALDSEERSDGTFATKETVPP----------FSYLEEADMRSALGAGVQLEGIVGEQPPEEESGVEAKQRFIATIAKV 465
            I+ SPFRRCLQTAG VAR  G   V VHL VGERMDKVR+E     L +D  E +    A+    PP          F+YL   +M  ALG GV L  ++GE+PP  ES ++AK R+   +A++
Sbjct:  468 IVSSPFRRCLQTAGHVARVFGCGVVHVHLGVGERMDKVRQECGPGTLLVDPAEEAQRPDASASDAPPPAASSLRRVAFAYLTPEEMGDALGEGVALGTVLGERPPLTESAMQAKLRYSHVLARM 591
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BLAST of mRNA_Ecto-sp13_S_contig1447.3440.1 vs. uniprot
Match: A0A812JSX5_9DINO (VAPB protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JSX5_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 1.470e-9
Identity = 57/176 (32.39%), Postives = 82/176 (46.59%), Query Frame = 1 
Query:   22 WPDRALRPYDSPIVDTDLPARQAKALGR-LGMG-SQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTFATKETVPPFSYLE-EADMRSALGAGVQLE-GIVGEQPPEEESGVEAKQRF-----IATIAKVREEQLRDSPVLVVAHGDTL 522
            WPD   RPYD+PI + +LP   A+ L   L  G +   ++ SPFRRCLQTA +  R LG+  + V  ++GE M  V ++   + L++                F Y+  E     A  AG+QL      + P  +ES  +  +R      IA  A  +EE      VL+V H D L
Sbjct:   34 WPDAGQRPYDTPISNEELPLESAQVLKESLPEGVAVCAVVSSPFRRCLQTAALAGRQLGLKMLHVDNRLGELMAAVARDCGPVKLEA--------------LGFRYISFEEAANIAEEAGLQLHWDPAADVPATDESAADILRRVDAGAAIARSALGKEEFSPTECVLLVTHADLL 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1447.3440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KJH9_9PHAE4.000e-11393.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G918_ECTSI9.440e-11293.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YJL4_9STRA8.570e-1945.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812JSX5_9DINO1.470e-932.39VAPB protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1447contigEcto-sp13_S_contig1447:86..655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size570
Hectar predicted targeting categoryother localisation
Exons1
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.329508-CDS-Ecto-sp13_S_contig1447:85..6551681462772.329508-CDS-Ecto-sp13_S_contig1447:85..655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1447 86..655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1447.3440.1prot_Ecto-sp13_S_contig1447.3440.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1447 86..655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1447.3440.1

>prot_Ecto-sp13_S_contig1447.3440.1 ID=prot_Ecto-sp13_S_contig1447.3440.1|Name=mRNA_Ecto-sp13_S_contig1447.3440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
DKLKAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFR
RCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTF
ATKETVPPFSYLEEADMRSALGAGVQLEGIVGEQPPEEESGVEAKQRFIA
TIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEGE
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mRNA from alignment at Ecto-sp13_S_contig1447:86..655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1447.3440.1 ID=mRNA_Ecto-sp13_S_contig1447.3440.1|Name=mRNA_Ecto-sp13_S_contig1447.3440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1447:86..655+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGTTGAAGGCGGTACCTTGGCCTGACAGGGCGCTCCGGCCGTACGA
TTCTCCAATAGTCGACACCGATCTTCCCGCTCGACAAGCGAAGGCGCTCG
GCCGGCTCGGAATGGGCTCGCAAACGGTGATAATTTGCTCTCCGTTCCGA
CGTTGCCTTCAGACGGCCGGCGTAGTTGCCCGGACGCTAGGCGTGGCAAG
CGTTACGGTACACTTGCAAGTAGGAGAACGCATGGACAAGGTGCGCAAGG
AGATTGCAGAGCTGGCGTTGGACAGCGAGGAACGATCGGATGGCACCTTT
GCAACGAAGGAGACGGTCCCGCCGTTCAGCTACCTTGAGGAAGCGGACAT
GCGCTCGGCACTCGGAGCAGGGGTGCAGTTAGAGGGGATAGTCGGGGAAC
AGCCGCCAGAGGAGGAAAGCGGAGTAGAAGCAAAGCAGCGTTTTATAGCC
ACCATCGCGAAAGTGCGTGAAGAGCAACTGCGTGATAGTCCTGTGCTGGT
GGTGGCCCACGGCGACACGCTGGACGCTGCTGGCGAATCCCTTGCGTCTC
AGATTGTTTTCGAAGGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1447:86..655+

>mRNA_Ecto-sp13_S_contig1447.3440.1 ID=mRNA_Ecto-sp13_S_contig1447.3440.1|Name=mRNA_Ecto-sp13_S_contig1447.3440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1447:86..655+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGTTGAAGGCGGTACCTTGGCCTGACAGGGCGCTCCGGCCGTACGA
TTCTCCAATAGTCGACACCGATCTTCCCGCTCGACAAGCGAAGGCGCTCG
GCCGGCTCGGAATGGGCTCGCAAACGGTGATAATTTGCTCTCCGTTCCGA
CGTTGCCTTCAGACGGCCGGCGTAGTTGCCCGGACGCTAGGCGTGGCAAG
CGTTACGGTACACTTGCAAGTAGGAGAACGCATGGACAAGGTGCGCAAGG
AGATTGCAGAGCTGGCGTTGGACAGCGAGGAACGATCGGATGGCACCTTT
GCAACGAAGGAGACGGTCCCGCCGTTCAGCTACCTTGAGGAAGCGGACAT
GCGCTCGGCACTCGGAGCAGGGGTGCAGTTAGAGGGGATAGTCGGGGAAC
AGCCGCCAGAGGAGGAAAGCGGAGTAGAAGCAAAGCAGCGTTTTATAGCC
ACCATCGCGAAAGTGCGTGAAGAGCAACTGCGTGATAGTCCTGTGCTGGT
GGTGGCCCACGGCGACACGCTGGACGCTGCTGGCGAATCCCTTGCGTCTC
AGATTGTTTTCGAAGGTGAG
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