mRNA_Ecto-sp13_S_contig14460.3433.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14460.3433.1
Unique NamemRNA_Ecto-sp13_S_contig14460.3433.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14460.3433.1 vs. uniprot
Match: A0A6H5L145_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L145_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.480e-10
Identity = 34/47 (72.34%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   13 MAHRVQLALYDLSRGMAKAMSMAILGKQIDGEHQRVLCPRSLSAFFG 153
            MAHRVQLALYDLSRGMAKAMSMAILGKQIDG     +       FFG
Sbjct:    1 MAHRVQLALYDLSRGMAKAMSMAILGKQIDGIWHTGIIVYGKEYFFG 47
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BLAST of mRNA_Ecto-sp13_S_contig14460.3433.1 vs. uniprot
Match: A0A835YYT1_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT1_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.730e-5
Identity = 21/28 (75.00%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:   22 RVQLALYDLSRGMAKAMSMAILGKQIDG 105
            +VQLALYDLSRG+A++MSMA+LG+Q+DG
Sbjct:    3 KVQLALYDLSRGLARSMSMALLGRQVDG 30
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BLAST of mRNA_Ecto-sp13_S_contig14460.3433.1 vs. uniprot
Match: A0A0L8GC47_OCTBM (PPPDE domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8GC47_OCTBM)

HSP 1 Score: 48.5 bits (114), Expect = 3.740e-5
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 AKSKMAHRVQLALYDLSRGMAKAMSMAILGKQIDGEHQRVLCPRSLSAFFG 153
            A+S+  H+V++ +YDLS+GMA A+SM +LGKQIDG     +    +  +FG
Sbjct:    2 AQSEDEHKVEVYIYDLSKGMATALSMPLLGKQIDGIWHTAIVVFGMEYYFG 52
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BLAST of mRNA_Ecto-sp13_S_contig14460.3433.1 vs. uniprot
Match: UPI000719DD0B (uncharacterized protein LOC106806168 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DD0B)

HSP 1 Score: 47.8 bits (112), Expect = 7.010e-5
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   19 HRVQLALYDLSRGMAKAMSMAILGKQIDG 105
            H V+L +YDLSRG+AK+MSMA LGKQ+DG
Sbjct:    4 HEVKLHIYDLSRGLAKSMSMAFLGKQLDG 32
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BLAST of mRNA_Ecto-sp13_S_contig14460.3433.1 vs. uniprot
Match: C1DXX8_MICCC (PPPDE domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DXX8_MICCC)

HSP 1 Score: 46.2 bits (108), Expect = 9.760e-5
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   19 HRVQLALYDLSRGMAKAMSMAILGKQIDGEHQRVLCPRSLSAFFG 153
            H+V L LYDLS+GMA+AMS A+LG+QIDG     +       +FG
Sbjct:    1 HQVTLHLYDLSQGMARAMSPALLGRQIDGVWHTGIVVHGQEYYFG 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14460.3433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L145_9PHAE3.480e-1072.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYT1_9STRA2.730e-575.00PPPDE putative peptidase domain-containing protein... [more]
A0A0L8GC47_OCTBM3.740e-545.10PPPDE domain-containing protein n=2 Tax=Octopus Ta... [more]
UPI000719DD0B7.010e-572.41uncharacterized protein LOC106806168 n=1 Tax=Priap... [more]
C1DXX8_MICCC9.760e-551.11PPPDE domain-containing protein (Fragment) n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14460contigEcto-sp13_S_contig14460:3806..3958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score64.3
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog2880.D7FR46
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Lys63-specific deubiquitinase activity
EggNOG OGsKOG0324@1,KOG0324@2759
Cds size141
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.866044-CDS-Ecto-sp13_S_contig14460:3805..39461681462771.866044-CDS-Ecto-sp13_S_contig14460:3805..3946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14460 3806..3946 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.8783345-UTR-Ecto-sp13_S_contig14460:3946..39581681462771.8783345-UTR-Ecto-sp13_S_contig14460:3946..3958Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14460 3947..3958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14460.3433.1prot_Ecto-sp13_S_contig14460.3433.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14460 3806..3946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14460.3433.1

>prot_Ecto-sp13_S_contig14460.3433.1 ID=prot_Ecto-sp13_S_contig14460.3433.1|Name=mRNA_Ecto-sp13_S_contig14460.3433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MAHRVQLALYDLSRGMAKAMSMAILGKQIDGEHQRVLCPRSLSAFFG
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mRNA from alignment at Ecto-sp13_S_contig14460:3806..3958-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14460.3433.1 ID=mRNA_Ecto-sp13_S_contig14460.3433.1|Name=mRNA_Ecto-sp13_S_contig14460.3433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14460:3806..3958- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAAGAGCAAGATGGCGCACAGGGTCCAACTAGCGTTGTACGACTTGTC
ACGCGGAATGGCGAAAGCGATGAGTATGGCAATACTGGGAAAGCAGATAG
ACGGTGAGCACCAGCGCGTTCTTTGTCCGCGTTCTTTGTCCGCGTTCTTT
GGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14460:3806..3958-

>mRNA_Ecto-sp13_S_contig14460.3433.1 ID=mRNA_Ecto-sp13_S_contig14460.3433.1|Name=mRNA_Ecto-sp13_S_contig14460.3433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14460:3806..3958- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCACAGGGTCCAACTAGCGTTGTACGACTTGTCACGCGGAATGGC
GAAAGCGATGAGTATGGCAATACTGGGAAAGCAGATAGACGGTGAGCACC
AGCGCGTTCTTTGTCCGCGTTCTTTGTCCGCGTTCTTTGGA
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