mRNA_Ecto-sp13_S_contig14460.3432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14460.3432.1
Unique NamemRNA_Ecto-sp13_S_contig14460.3432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: A0A6H5L145_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L145_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 2.230e-77
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            + GIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELG TDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPL+E
Sbjct:   29 IDGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGYTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLVE 147          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: A0A835YYT1_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.940e-49
Identity = 73/119 (61.34%), Postives = 95/119 (79.83%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            + GIWHTG+IVYGKEYFF GG+Q+M HE F  MHGG  P +YI+LG T + ++L +DF RE+ PRFTA TY+L +HNCN +S+E S+FLL +GIPEYI+NLP EVL +PMG M+ P++E
Sbjct:   28 VDGIWHTGVIVYGKEYFFSGGIQAMKHEDFCAMHGGFRPEQYIDLGKTQIPEDLLQDFLREISPRFTAMTYNLFRHNCNNFSDEVSRFLLDRGIPEYIINLPNEVLQTPMGRMMVPMVE 146          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: A9SH91_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SH91_PHYPA)

HSP 1 Score: 158 bits (400), Expect = 3.520e-46
Identity = 71/119 (59.66%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            + GIWHTG+ VYGKEYFFGGG+QS+P +Q    +G   P +  +LG+T++ QE+FE++ R++QPR+T QTY LMKHNCN +S+E  QFL+G GIPEYI+ LP+EVL+SPMGG+LRP++E
Sbjct:   30 IEGIWHTGVGVYGKEYFFGGGIQSVPLKQ--SPYGQ--PVQVAQLGTTEVPQEVFEEYLRDIQPRYTQQTYSLMKHNCNNFSDEVCQFLVGSGIPEYILRLPEEVLSSPMGGLLRPMIE 144          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: A0A2K1JH70_PHYPA (PPPDE domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JH70_PHYPA)

HSP 1 Score: 158 bits (400), Expect = 1.730e-45
Identity = 71/119 (59.66%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            + GIWHTG+ VYGKEYFFGGG+QS+P +Q    +G   P +  +LG+T++ QE+FE++ R++QPR+T QTY LMKHNCN +S+E  QFL+G GIPEYI+ LP+EVL+SPMGG+LRP++E
Sbjct:   32 IEGIWHTGVGVYGKEYFFGGGIQSVPLKQ--SPYGQ--PVQVAQLGTTEVPQEVFEEYLRDIQPRYTQQTYSLMKHNCNNFSDEVCQFLVGSGIPEYILRLPEEVLSSPMGGLLRPMIE 146          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: UPI00053C6B0B (desumoylating isopeptidase 1-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6B0B)

HSP 1 Score: 149 bits (375), Expect = 3.230e-42
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            + GIWHTG++VYG EYFFGGG+QS+P  +    +G   P   IELG T +  ++FE + +E+ PR+TA+TY L+ HNCN +SNE SQFL+GKGIP+YI+ LP EV+NSPMGG++ P+++
Sbjct:   32 IDGIWHTGVVVYGNEYFFGGGIQSLPAGR--TPYGT--PVRVIELGETHVPNDVFEMYLQEISPRYTAETYSLLSHNCNNFSNEVSQFLVGKGIPDYILQLPNEVMNSPMGGLIMPMIQ 146          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: A0A7S3XW21_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW21_HETAK)

HSP 1 Score: 148 bits (374), Expect = 2.300e-41
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            +  I+HTGI+VYGKE+FFGGG+Q   HE FV  HGG+ P +Y++LG+T++ +  F+ F R+   RFT QTYDL+++NCN + +  + FLL KGIPEYIV LP+ V ++PMG ML+P++E
Sbjct:   37 IEAIYHTGILVYGKEFFFGGGIQQCAHETFVASHGGIRPIQYLDLGTTNIPEHEFQKFLRDNNHRFTMQTYDLIRNNCNNFCDACAHFLLDKGIPEYIVKLPERVFSTPMGMMLKPMIE 155          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: A0A0D9VMJ2_9ORYZ (PPPDE domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VMJ2_9ORYZ)

HSP 1 Score: 145 bits (366), Expect = 5.210e-41
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEY------IELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            +  IWHTG++VYG EYFFGGG+QS+P           G T Y      +ELG T + +E+FED+ R++ PR+TA+TY LM HNCN +SNE +QFL+G GIP+YI+NLP EV++SPMG ++ P+++
Sbjct:   32 IEAIWHTGVVVYGNEYFFGGGIQSLP----------AGTTPYGRPVRVVELGETHIPREVFEDYLRDISPRYTAETYRLMTHNCNNFSNEVAQFLVGAGIPDYILNLPNEVMSSPMGPLIMPMIQ 146          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: A0A453Q199_AEGTS (PPPDE domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453Q199_AEGTS)

HSP 1 Score: 143 bits (360), Expect = 8.570e-41
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEY------IELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            +  IWHTG++VYG EYFFGGG+Q+ P           G T+Y      ++LG T L +E+FED+ R++ PR+TA TY L+ HNCN +SNE +QFL+G GIP+YI+NLP EV++SPMG M+ P+++
Sbjct:   31 IEAIWHTGVVVYGNEYFFGGGIQAAP----------AGATQYGRPVRVVDLGVTHLPREVFEDYLRDIAPRYTAATYSLLTHNCNNFSNEVAQFLVGAGIPDYILNLPNEVMSSPMGAMIMPMIQ 145          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: A0A6D2HV83_9BRAS (PPPDE domain-containing protein n=2 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2HV83_9BRAS)

HSP 1 Score: 145 bits (365), Expect = 8.610e-41
Identity = 62/119 (52.10%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            + G+WHTG++VYG EYFFGGG+Q +P       +G   P   IELG + + Q++FE + +E+ PR+TA++Y+L+ HNCN +SNE +QFL+GKGIP+YI+ LP EV+NSPMGG+L P+++
Sbjct:   32 IEGVWHTGVVVYGNEYFFGGGIQHLPAG--TTPYGA--PLRIIELGESHVPQDVFEMYLQEISPRYTAESYNLLTHNCNNFSNEVAQFLVGKGIPDYILQLPNEVMNSPMGGLLMPMIQ 146          
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Match: M4FGY2_BRARP (PPPDE domain-containing protein n=6 Tax=Brassica TaxID=3705 RepID=M4FGY2_BRARP)

HSP 1 Score: 144 bits (363), Expect = 8.670e-41
Identity = 63/125 (50.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:    1 LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEY------IELGSTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLLE 357
            + G+WHTGI+VYG EYFFGGG+Q +P           G T Y      +E+G T + +++FE +  E+ PR+TA++Y+L+ HNCN +SNE SQFL+GKGIP+YI+ LP EV+NSPMGG+L P+++
Sbjct:   27 IEGVWHTGIVVYGNEYFFGGGIQHLP----------AGTTPYGAPLRTVEMGETHVPKDVFEMYLEEISPRYTAESYNLITHNCNNFSNEVSQFLVGKGIPDYILQLPSEVMNSPMGGLLMPMIQ 141          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14460.3432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L145_9PHAE2.230e-7796.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYT1_9STRA1.940e-4961.34PPPDE putative peptidase domain-containing protein... [more]
A9SH91_PHYPA3.520e-4659.66Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A2K1JH70_PHYPA1.730e-4559.66PPPDE domain-containing protein n=3 Tax=Physcomitr... [more]
UPI00053C6B0B3.230e-4254.62desumoylating isopeptidase 1-like n=1 Tax=Tarenaya... [more]
A0A7S3XW21_HETAK2.300e-4152.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0D9VMJ2_9ORYZ5.210e-4151.20PPPDE domain-containing protein n=1 Tax=Leersia pe... [more]
A0A453Q199_AEGTS8.570e-4150.40PPPDE domain-containing protein n=1 Tax=Aegilops t... [more]
A0A6D2HV83_9BRAS8.610e-4152.10PPPDE domain-containing protein n=2 Tax=Coluteocar... [more]
M4FGY2_BRARP8.670e-4150.40PPPDE domain-containing protein n=6 Tax=Brassica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14460contigEcto-sp13_S_contig14460:870..2062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score246.9
Seed ortholog evalue4.7e-63
Seed eggNOG ortholog2880.D7FR46
Model size357
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Lys63-specific deubiquitinase activity
EggNOG OGsKOG0324@1,KOG0324@2759
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-09_003530.2
Cds size357
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.791816-CDS-Ecto-sp13_S_contig14460:869..9371681462771.791816-CDS-Ecto-sp13_S_contig14460:869..937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14460 870..937 -
1681462771.8044388-CDS-Ecto-sp13_S_contig14460:1235..13681681462771.8044388-CDS-Ecto-sp13_S_contig14460:1235..1368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14460 1236..1368 -
1681462771.8148503-CDS-Ecto-sp13_S_contig14460:1906..20621681462771.8148503-CDS-Ecto-sp13_S_contig14460:1906..2062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14460 1907..2062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14460.3432.1prot_Ecto-sp13_S_contig14460.3432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14460 870..2062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14460.3432.1

>prot_Ecto-sp13_S_contig14460.3432.1 ID=prot_Ecto-sp13_S_contig14460.3432.1|Name=mRNA_Ecto-sp13_S_contig14460.3432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
LTGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGSTDL
TQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVN
LPQEVLNSPMGGMLRPLLE
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mRNA from alignment at Ecto-sp13_S_contig14460:870..2062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14460.3432.1 ID=mRNA_Ecto-sp13_S_contig14460.3432.1|Name=mRNA_Ecto-sp13_S_contig14460.3432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14460:870..2062- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGACAGGAATCTGGCACACAGGCATCATCGTTTACGGGAAGGAATACTT CTTTGGTGGCGGCCTGCAAAGCATGCCCCACGAGCAGTTCGTCCAGATGC ACGGAGGGGTTGGGCCAACCGAGTACATCGAGCTAGGGTCTACCGATCTC ACACAGGTGTGGATGAACGGAGTGCTCTTGGGATATCATCTACAGTACGT GCCAGCAGCGCACATGCGCTTTGTAGTACAGTACATGTCGTCTGTCGCGC ACCAGACGTAAGTGCCAGAGTATGTTTTTTTGTGGTGTTCGTCCCATCTA TTCTGGGTGCCAGTCTGTGCCTTTCGACATGTGGTTGGCGCACCAGCCGG AGTCAGCCACACGGCAGGTGCTGTATCTAAAACACAGCAGCATTGGTGGT AGTTGGCTCTGACTTTTGATTGGAGTTGGATTGTAGCGATGCTGCTGCGC GCATATCTTATCAGTTCTCCTCTCTCATCGACGGCGCAGCAGGCCTCTGG TTCTTGGCAGTGGCTTGGCTCGTGACGTCTCTTTACCTGCAGTACTCCGG ATGATCGCCACGCATGTACCCTCTCGCTGTTTGCGGCATCGAACTCTGCC TGCCTTGTACTTACCAGGGTTTTGCTCATTTTTTTGTACTTTCCGTTCTC GGCCCACTCTCTTTCTCGCCCATTTATTTTCCTCTGTTTGACAGGAGCTC TTCGAAGACTTCAATCGAGAAGTACAACCGCGCTTCACGGCTCAAACGTA CGACCTGATGAAGCACAACTGCAACACGTACTCCAACGAGGCGTCTCAGT TTTTGCTTGGCAAGGGGATCCCGGAGTGTGAGTGTGTTTTGCAGCAATGC GTAGATCAGCTTTGAGGCAAGGGTAGGAGGAGATGCAATTGTAGCGTCTC TTTGGTTGGGGTGGCGGGATTCGTGTCCCGGTCGAAATGTGCCGTCGGGG ATCTTTGTTGCAGACGGTCATCTCTGGTGGGTATTCGTGTGAGGCGTTGT ATTGGTTACCAGCACGAACGAGAGTATCCTTCCACCCTCTTGTACGCTAC ACTAGTCCCTCGTCGTGACTGCCTTATGTACCCTCATTTTGCACCTTTCC CTCGTGTTCCACGGACTCGCTGCAGACATCGTCAATCTCCCGCAAGAGGT ACTGAATTCGCCCATGGGAGGGATGCTAAGGCCACTCTTGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14460:870..2062-

>mRNA_Ecto-sp13_S_contig14460.3432.1 ID=mRNA_Ecto-sp13_S_contig14460.3432.1|Name=mRNA_Ecto-sp13_S_contig14460.3432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14460:870..2062- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGACAGGAATCTGGCACACAGGCATCATCGTTTACGGGAAGGAATACTT
CTTTGGTGGCGGCCTGCAAAGCATGCCCCACGAGCAGTTCGTCCAGATGC
ACGGAGGGGTTGGGCCAACCGAGTACATCGAGCTAGGGTCTACCGATCTC
ACACAGGAGCTCTTCGAAGACTTCAATCGAGAAGTACAACCGCGCTTCAC
GGCTCAAACGTACGACCTGATGAAGCACAACTGCAACACGTACTCCAACG
AGGCGTCTCAGTTTTTGCTTGGCAAGGGGATCCCGGAGTACATCGTCAAT
CTCCCGCAAGAGGTACTGAATTCGCCCATGGGAGGGATGCTAAGGCCACT
CTTGGAA
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