mRNA_Ecto-sp13_S_contig14459.3428.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14459.3428.1
Unique NamemRNA_Ecto-sp13_S_contig14459.3428.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14459.3428.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.530e-34
Identity = 69/89 (77.53%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    7 GVAAAGVGAAHVLTGPGRLEDGAWEEASSTGPGMRYYGGARFEPLSRKRRSXXXXXXXXXXGAGASSEGGVSTAGDMGEPSPCWRAYGG 273
            G+   GVGAAHVLTGPGRLEDGAW EASS  PGMRYYGGARFEPLSRKRRS          G G SSEGGVS AGDMGEPSPCWRAYGG
Sbjct:  245 GIXXXGVGAAHVLTGPGRLEDGAWGEASSGCPGMRYYGGARFEPLSRKRRSSGGAVAAASRGDGGSSEGGVSEAGDMGEPSPCWRAYGG 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14459.3428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMF2_ECTSI2.530e-3477.53Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14459contigEcto-sp13_S_contig14459:3039..4380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score135.2
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D8LMF2
Model size273
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
Cds size273
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.564798-CDS-Ecto-sp13_S_contig14459:3038..32011681462771.564798-CDS-Ecto-sp13_S_contig14459:3038..3201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14459 3039..3201 -
1681462771.5891764-CDS-Ecto-sp13_S_contig14459:4270..43801681462771.5891764-CDS-Ecto-sp13_S_contig14459:4270..4380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14459 4271..4380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14459.3428.1prot_Ecto-sp13_S_contig14459.3428.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14459 3039..4380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14459.3428.1

>prot_Ecto-sp13_S_contig14459.3428.1 ID=prot_Ecto-sp13_S_contig14459.3428.1|Name=mRNA_Ecto-sp13_S_contig14459.3428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
AAGVAAAGVGAAHVLTGPGRLEDGAWEEASSTGPGMRYYGGARFEPLSRK
RRSSGGAVAAAASGAGASSEGGVSTAGDMGEPSPCWRAYGG
back to top

mRNA from alignment at Ecto-sp13_S_contig14459:3039..4380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14459.3428.1 ID=mRNA_Ecto-sp13_S_contig14459.3428.1|Name=mRNA_Ecto-sp13_S_contig14459.3428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14459:3039..4380- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCCGGGGTTGCGGCGGCCGGTGTGGGCGCGGCGCACGTGCTCACGGG
CCCGGGGAGGCTGGAGGACGGTGCGTGGGAGGAGGCGTCGTCTACCGGTC
CGGGGATGAGGTGAAGAGCTAAGAAAAGTGTACAGTAGGTAGAAAGGAAA
GCAGAGCAGAGCAGAGGCAGAGTGCGACTCCTTCTCTCAGTCGAGGGGCC
CCATTCTACGTAGTGCTTTCCCGGTTACACCCCAATATACACGGCACGGC
AGTTCGAATTGTTTCAATAAGTCTCGGTTGGTGTTGCTGTCTACGCCTTA
AACTAACCTGCCCCAGAATAAACAGGGCAGAGGCAGAGGCATTATTTGTG
CTTCCGGACCGCAGGCACAGGGATCGGAGCTATGTTTTTGTGTTGCACGA
AAAAGGGGGTAAAGGTGTATTATAGTATAACCTTGTACGGAAATCGGAGC
AGTGTTGTTGTTGTTGAGCGAAGAGGCACAGGCGTACCTAATTGAACGGA
TAGTGTCAGAACGGTGGAACGAACTTCTGGCAGGGCTTGCTTGCTTGCTC
GCCGCGGTGAGGGGGTGAGGGGAGGGGTACTCATGTAAACGCATGCCATG
GTCGTTAGACCATATACCTCGCATCCCTACAACGCCGGGACGGAGGAGCG
ATATGGCTTCCGGGCTTTCGCCGGCCCAGCATTTGTTACACAGGGGAGGG
CGGGGGTTGTATTTCTTCCCCGCTCATAGTTGGTCGTGCCCCGTTGCCTT
TTTTTTGGCGATAGGCGGTGTCAAGACAGGGGCAAGGGTAACTTCGTGGT
CATTGATGTGTTGTGGTTTGCTTCGACGTCTCGGCTAGAGCAACTTTTTC
CCCGGTCATTTTTTTTTTGTGTGTCGAAGGTACCCGTCTTGTCGTTGTAG
GCAAAGGGCGGGAGAAGGAGCAGGCGGTGTTGCGGGTTGAGTCGTTCGTT
GCCTCGTTTGTTTGCTCCGCTTGTTTCTCCCGAACGGAGGCGTCGCAGCG
GTGGCGGGGAGGGCGGTACCTAGGCATCAACTGCTAAATGTGGTTTGCTG
TTGCCCCAGCTCTTTTCTTTTTTATGCACACGGCGTTGCACTCATGCAGA
AGCTTTTGCCTGGGGGCAGAACCTGCGAGGTTTGCCTCTGGATCGTTGAC
TTCTCGTCCCCGTGTGTTGCTTCGGGCAGGTACTACGGCGGAGCGCGATT
CGAACCTCTGTCAAGAAAGCGACGTTCATCGGGAGGAGCCGTAGCAGCAG
CAGCGAGCGGTGCTGGTGCAAGCAGTGAGGGAGGCGTCTCGACAGCAGGG
GACATGGGCGAACCGTCCCCTTGTTGGCGCGCGTACGGCGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14459:3039..4380-

>mRNA_Ecto-sp13_S_contig14459.3428.1 ID=mRNA_Ecto-sp13_S_contig14459.3428.1|Name=mRNA_Ecto-sp13_S_contig14459.3428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14459:3039..4380- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCCGGGGTTGCGGCGGCCGGTGTGGGCGCGGCGCACGTGCTCACGGG
CCCGGGGAGGCTGGAGGACGGTGCGTGGGAGGAGGCGTCGTCTACCGGTC
CGGGGATGAGGTACTACGGCGGAGCGCGATTCGAACCTCTGTCAAGAAAG
CGACGTTCATCGGGAGGAGCCGTAGCAGCAGCAGCGAGCGGTGCTGGTGC
AAGCAGTGAGGGAGGCGTCTCGACAGCAGGGGACATGGGCGAACCGTCCC
CTTGTTGGCGCGCGTACGGCGGG
back to top