mRNA_Ecto-sp13_S_contig14459.3427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14459.3427.1
Unique NamemRNA_Ecto-sp13_S_contig14459.3427.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.740e-24
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1
Query:   25 QPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEKVR 192
            QPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLG+ELM+SEK R
Sbjct:  589 QPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGEELMDSEKFR 644          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: A0A524QTE3_9BACT (Isochorismate synthase MenF n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A524QTE3_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 4.410e-10
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   19 YRQPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEKVR 192
            Y QP + TAF+G TPERL+   G  +  +A+AGTR RGD+  ED+R+G+EL+ SEK R
Sbjct:  257 YLQPTSDTAFMGATPERLYHRNGKRIQCDAIAGTRPRGDSEHEDQRMGEELLSSEKDR 314          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: A0A2T2S4P7_9BACT (Isochorismate synthase (Fragment) n=1 Tax=Bacteroidetes bacterium QH_10_64_37 TaxID=1919091 RepID=A0A2T2S4P7_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 7.520e-10
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   25 QPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEKVR 192
            +P   +AF+G +PERLF   G TVV+EA+AGTR RGDT  EDERL KEL+++ K R
Sbjct:  268 RPADGSAFVGASPERLFRRAGRTVVSEAVAGTRPRGDTEAEDERLRKELLQNPKER 323          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: A0A496Z2H9_9DELT (Isochorismate synthase MenF n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A496Z2H9_9DELT)

HSP 1 Score: 62.4 bits (150), Expect = 8.240e-10
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   25 QPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEK 186
            Q D++TAF+G +PERL+  +G T+ +EA+AGTR RG+T   DERLG+EL+ SEK
Sbjct:  261 QVDSTTAFIGASPERLYQRQGRTIKSEAVAGTRPRGETYEADERLGQELLSSEK 314          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-9
Identity = 35/56 (62.50%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   25 QPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEKVR 192
            Q DA  AFLGCTPE+LF   G  + TEALAGTR RG T  EDE L  ELM S K R
Sbjct:  301 QLDADRAFLGCTPEQLFRVAGGAISTEALAGTRPRGQTPEEDEALAAELMASHKDR 356          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: A0A1V1WW75_9DELT (Isochorismate synthase MenF n=1 Tax=Desulfobacterales bacterium S7086C20 TaxID=1869302 RepID=A0A1V1WW75_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 2.880e-9
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   25 QPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEK 186
            QPD+S AFLG +PERL+   G T+ TEA+AG+R RGD+T  DE L  EL+ SEK
Sbjct:  258 QPDSSAAFLGASPERLYRRDGHTLKTEAIAGSRSRGDSTEADEALCLELISSEK 311          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: A0A7S2G2G6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G2G6_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 4.770e-9
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    4 HPPLSYRQPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEK 186
            H  L   Q  A  +F+GCTPE+LF  +G  + TEALAGTR RGDT   D+RL  EL+  EK
Sbjct:   84 HAYLFLLQLSADESFMGCTPEKLFKLEGDQLSTEALAGTRPRGDTAETDQRLAHELLHCEK 144          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: A0A2H5XN56_9BACT (Isochorismate synthase MenF n=3 Tax=Bacteria TaxID=2 RepID=A0A2H5XN56_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.000e-8
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   19 YRQPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEKVR 192
            Y QP+   AFLG +PERLF      V TEA+AGTR RG T  +D RL  EL+ESEK R
Sbjct:  241 YYQPEVGKAFLGASPERLFRRAEGQVWTEAVAGTRPRGQTEADDARLAAELLESEKDR 298          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: D5H8W0_SALRM (Isochorismate synthase MenF n=10 Tax=Salinibacter ruber TaxID=146919 RepID=D5H8W0_SALRM)

HSP 1 Score: 59.3 bits (142), Expect = 1.010e-8
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   25 QPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEKVR 192
            +P    AF+G +PERLF   G TVV+EA+AGTR RG+T  ED RL +EL++S K R
Sbjct:  354 RPSRGAAFVGASPERLFRRAGRTVVSEAVAGTRPRGETAAEDARLRQELLQSPKER 409          
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Match: A0A3M1XED4_9BACT (Isochorismate synthase MenF n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1XED4_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.580e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   19 YRQPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGKELMESEKVR 192
            Y Q +  +AFLGC+PERLF   G  + TEA+AGTR RG T  ED  L ++L++S K R
Sbjct:  277 YFQLEGGSAFLGCSPERLFRRSGRLLFTEAVAGTRPRGHTAREDRELARQLLQSRKDR 334          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14459.3427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF2_ECTSI2.740e-2494.64Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A524QTE3_9BACT4.410e-1053.45Isochorismate synthase MenF n=1 Tax=candidate divi... [more]
A0A2T2S4P7_9BACT7.520e-1058.93Isochorismate synthase (Fragment) n=1 Tax=Bacteroi... [more]
A0A496Z2H9_9DELT8.240e-1057.41Isochorismate synthase MenF n=1 Tax=Deltaproteobac... [more]
A0A4D9D2W1_9STRA1.160e-962.50MR_MLE domain-containing protein n=6 Tax=Monodopsi... [more]
A0A1V1WW75_9DELT2.880e-959.26Isochorismate synthase MenF n=1 Tax=Desulfobactera... [more]
A0A7S2G2G6_9EUKA4.770e-952.46Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A2H5XN56_9BACT1.000e-856.90Isochorismate synthase MenF n=3 Tax=Bacteria TaxID... [more]
D5H8W0_SALRM1.010e-855.36Isochorismate synthase MenF n=10 Tax=Salinibacter ... [more]
A0A3M1XED4_9BACT2.580e-851.72Isochorismate synthase MenF n=1 Tax=Calditrichaeot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14459contigEcto-sp13_S_contig14459:75..266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score106.7
Seed ortholog evalue4.1e-21
Seed eggNOG ortholog2880.D8LMF2
Model size192
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
Cds size192
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.5097792-CDS-Ecto-sp13_S_contig14459:74..2661681462771.5097792-CDS-Ecto-sp13_S_contig14459:74..266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14459 75..266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14459.3427.1prot_Ecto-sp13_S_contig14459.3427.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14459 75..266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14459.3427.1

>prot_Ecto-sp13_S_contig14459.3427.1 ID=prot_Ecto-sp13_S_contig14459.3427.1|Name=mRNA_Ecto-sp13_S_contig14459.3427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
PHPPLSYRQPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTED
ERLGKELMESEKVR
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mRNA from alignment at Ecto-sp13_S_contig14459:75..266-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14459.3427.1 ID=mRNA_Ecto-sp13_S_contig14459.3427.1|Name=mRNA_Ecto-sp13_S_contig14459.3427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14459:75..266- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCATCCCCCTTTGTCCTACCGGCAGCCTGATGCGAGCACGGCGTTCTT GGGGTGCACGCCGGAGCGTCTTTTCCTGTCCAAGGGCTCGACCGTGGTGA CGGAGGCGTTGGCGGGTACGAGGGGGAGGGGGGACACGACAACCGAGGAC GAGCGCCTTGGCAAGGAGCTCATGGAAAGCGAGAAGGTTCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14459:75..266-

>mRNA_Ecto-sp13_S_contig14459.3427.1 ID=mRNA_Ecto-sp13_S_contig14459.3427.1|Name=mRNA_Ecto-sp13_S_contig14459.3427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14459:75..266- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCATCCCCCTTTGTCCTACCGGCAGCCTGATGCGAGCACGGCGTTCTT
GGGGTGCACGCCGGAGCGTCTTTTCCTGTCCAAGGGCTCGACCGTGGTGA
CGGAGGCGTTGGCGGGTACGAGGGGGAGGGGGGACACGACAACCGAGGAC
GAGCGCCTTGGCAAGGAGCTCATGGAAAGCGAGAAGGTTCGT
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