mRNA_Ecto-sp13_S_contig14455.3425.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14455.3425.1
Unique NamemRNA_Ecto-sp13_S_contig14455.3425.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14455.3425.1 vs. uniprot
Match: D7FJ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ88_ECTSI)

HSP 1 Score: 715 bits (1845), Expect = 9.260e-248
Identity = 431/520 (82.88%), Postives = 456/520 (87.69%), Query Frame = 1 
Query:    1 MLLDLLAMLPPDGAKSPPPELAPGTGPPLLSGEGKERQQTDDLLSSDVGGTAERGSADKDKDEASPRSEGQEEEAERVGGGTDASNRQSAVAENVPETDAEDKVEQAVTESGSGGEGPPPSDEGRDAGDGPTALAEAGETGDVDCSEDPALPTSPSGRQDPGEGGSAASDMVEGLGSPSGSGKEALAEVSGRSTPSAEEEGDAVGERGGGQASRDGGGSHDNDRDDGAPVRQVSDEHGDETESEEEDNVFAAEPSCQDATGSVGTGVEAEEEGMTRDSASEEGSCKADEGEGVPAETTAPSTGGDDDVSAPEAGFVDDSGGGDTAPVGSVDPSDGPGEGEPESPVENLPPPSEAPDEPLHQEAGEPAGGSGGGDCADPDGATGQGAAEPVAGPSEAAGEDERSPEVPEADSEGDAEGGVSVVGDEQAAAVGLTANGGKPGGAVDAAEDRGGSSESLAGEALSPEEGADVEGGNG--DPQEEEEGTEDDVVFLQFEVEAEELELKRLLAEGEGQDKAADEV 1554
            MLLDLL MLPPDGAKSPPPELAPGT       EGKERQQ DDLLSSDVGGTAERGSADKDKD ASPRSEGQEEEAERV GGTDAS+RQSAVAENVPETDA+++VEQAV+ESG GG   PPSD G DAGD PTALAEAGETGDVD  EDPALP  PSGRQ+PGEGGSAASD+VEG GSPSGSGKEALAEVSGRSTPSAEE+GDA+GERG GQASRDG  S+D+D DDGAPVR VSDE+GD+TES+EEDNVFAAEPSC+DAT SVGTGVEAEEEGMTR  ASE GSC  DEGEGVPAETTAPSTGGDDDVSAPEAGF D++G  DTAPVGSVDPSDGPGEGEPESPV N PPPSEAPDEPLHQEAGEPAGGSG GDCADPDGATG GAAEPVAGPSEAAGEDER P VPE ++EGDA GGVS VGDE+AA VGL+ANGGKPGG VDAAEDRGGSS  L GEAL PEEG DVEGG G         GTEDDVVFLQFEVEA+ELELKRLL+EGEGQD+ ADE+
Sbjct:   39 MLLDLLTMLPPDGAKSPPPELAPGTXXXXXXXEGKERQQADDLLSSDVGGTAERGSADKDKDNASPRSEGQEEEAERVVGGTDASSRQSAVAENVPETDAQERVEQAVSESGPGGVETPPSDAGGDAGDRPTALAEAGETGDVDGMEDPALPAPPSGRQEPGEGGSAASDIVEGKGSPSGSGKEALAEVSGRSTPSAEEDGDAIGERGSGQASRDGRYSNDDD-DDGAPVRHVSDEYGDDTESDEEDNVFAAEPSCEDATASVGTGVEAEEEGMTRGEASEGGSCTGDEGEGVPAETTAPSTGGDDDVSAPEAGFGDENGDEDTAPVGSVDPSDGPGEGEPESPVGNPPPPSEAPDEPLHQEAGEPAGGSGDGDCADPDGATGHGAAEPVAGPSEAAGEDERRPGVPEPENEGDAVGGVSGVGDEEAATVGLSANGGKPGG-VDAAEDRGGSSALLEGEALPPEEGGDVEGGKGAXXXXXXXXGTEDDVVFLQFEVEAKELELKRLLSEGEGQDEEADEL 556
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BLAST of mRNA_Ecto-sp13_S_contig14455.3425.1 vs. uniprot
Match: A0A6H5KNZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ3_9PHAE)

HSP 1 Score: 682 bits (1759), Expect = 5.730e-232
Identity = 422/524 (80.53%), Postives = 446/524 (85.11%), Query Frame = 1 
Query:    1 MLLDLLAMLPPDGAKSPPPELAPGTGPPLLSGEGKERQQTDDLLSSDVGGTAERGSADKDKDEASPRSEGQEEEAERVGGGTDASNRQSAVAENVPETDAEDKVEQAVTESGSGGEGPPPSDEGRDAGDGPTALAEAGETGDVDCSEDPALPTSPSGRQDPGEGGSAASDMVEGLGSPSGSGKEALAEVSGRSTPSAEEEGDAVGERGGGQASRDGGGSHDNDRDDGAPVRQVSDEHGDETESEEEDNVFAAEPSCQDATGSVGTGVEAEEEGMTRDSASEEGSCKADEGEGVPAETTAPSTGGDDDVSAPEAGFVDDSGGGDTAPVGSVDPSDGPGEGEPESPVENLPPPSEAPDEPLHQEAGEPAGGSGGGDCADPDGATGQGAAEPVAGPSEAAGEDERSPEVPEADSEGDAEGGVSVVGDEQAAAVGLTANGGKPGGAVDAAEDRGGSSESLAGEALSPEEGADVEGGNGDPQEEEE------GTEDDVVFLQFEVEAEELELKRLLAEGEGQDKAADEV 1554
            MLLDLLAMLPPDGAKSPPPELA GTGPPLL   GKERQQ DDLLSSDVGGTAERGSAD+  D  SPRSEGQEEEA RV GGTDAS+ QSAVAENVPETDA++K E AV+ESGSG E  PPSD G DAGDGPTALA AGETGD+D SEDPALP SPSGRQ+P  GGSAASD+ EGLGSPSGSGKEALA+VSGRSTPSAE+ G+AVGERGGGQASRD     DN  DDGAPV  VSDE G+ETESEEEDNVF AEPSC+DAT SVGTGVEAEEEGMTRD ASE GSCK DEGEGVPAE TAPSTGGDDDVSAP AGFV+ +G GDTAPVG VDPSD PGEGEPES VEN P PSEA DEPLHQ AGEPA  SG GDCADP+GAT QGAAEPVAGPS A+GEDERSP VP+A+SEGDAEGGV  VGDE+AAAVGLTANGGKPGGAVDAAE+RG SS S +GEAL PEEGADVEGG G P           GTEDDVVFLQFEVEA+ELELKRLLAE EGQDKAADE+
Sbjct:  259 MLLDLLAMLPPDGAKSPPPELASGTGPPLLPEGGKERQQADDLLSSDVGGTAERGSADRYNDNMSPRSEGQEEEAARVCGGTDASSPQSAVAENVPETDAQEKGEHAVSESGSGEEDSPPSDAGGDAGDGPTALAGAGETGDMDGSEDPALPASPSGRQNP-RGGSAASDIAEGLGSPSGSGKEALAKVSGRSTPSAEKGGNAVGERGGGQASRDXXXXDDNGGDDGAPVSHVSDELGNETESEEEDNVFTAEPSCEDATASVGTGVEAEEEGMTRDEASEGGSCKGDEGEGVPAEMTAPSTGGDDDVSAPGAGFVNGNGSGDTAPVGIVDPSDEPGEGEPESLVENPPLPSEALDEPLHQGAGEPARESGDGDCADPNGATAQGAAEPVAGPSGASGEDERSPGVPQAESEGDAEGGVCAVGDEEAAAVGLTANGGKPGGAVDAAEERGDSSASPSGEALPPEEGADVEGGKGGPXXXXXXXXXXXGTEDDVVFLQFEVEAKELELKRLLAEREGQDKAADEL 781
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14455.3425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ88_ECTSI9.260e-24882.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNZ3_9PHAE5.730e-23280.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14455contigEcto-sp13_S_contig14455:1740..4125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1554
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008440.1
Cds size1554
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.3775313-CDS-Ecto-sp13_S_contig14455:1739..17781681462771.3775313-CDS-Ecto-sp13_S_contig14455:1739..1778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14455 1740..1778 +
1681462771.388352-CDS-Ecto-sp13_S_contig14455:2263..36971681462771.388352-CDS-Ecto-sp13_S_contig14455:2263..3697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14455 2264..3697 +
1681462771.396686-CDS-Ecto-sp13_S_contig14455:4044..41251681462771.396686-CDS-Ecto-sp13_S_contig14455:4044..4125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14455 4045..4125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14455.3425.1prot_Ecto-sp13_S_contig14455.3425.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14455 1740..4125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14455.3425.1

>prot_Ecto-sp13_S_contig14455.3425.1 ID=prot_Ecto-sp13_S_contig14455.3425.1|Name=mRNA_Ecto-sp13_S_contig14455.3425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=518bp
MLLDLLAMLPPDGAKSPPPELAPGTGPPLLSGEGKERQQTDDLLSSDVGG
TAERGSADKDKDEASPRSEGQEEEAERVGGGTDASNRQSAVAENVPETDA
EDKVEQAVTESGSGGEGPPPSDEGRDAGDGPTALAEAGETGDVDCSEDPA
LPTSPSGRQDPGEGGSAASDMVEGLGSPSGSGKEALAEVSGRSTPSAEEE
GDAVGERGGGQASRDGGGSHDNDRDDGAPVRQVSDEHGDETESEEEDNVF
AAEPSCQDATGSVGTGVEAEEEGMTRDSASEEGSCKADEGEGVPAETTAP
STGGDDDVSAPEAGFVDDSGGGDTAPVGSVDPSDGPGEGEPESPVENLPP
PSEAPDEPLHQEAGEPAGGSGGGDCADPDGATGQGAAEPVAGPSEAAGED
ERSPEVPEADSEGDAEGGVSVVGDEQAAAVGLTANGGKPGGAVDAAEDRG
GSSESLAGEALSPEEGADVEGGNGDPQEEEEGTEDDVVFLQFEVEAEELE
LKRLLAEGEGQDKAADEV
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mRNA from alignment at Ecto-sp13_S_contig14455:1740..4125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14455.3425.1 ID=mRNA_Ecto-sp13_S_contig14455.3425.1|Name=mRNA_Ecto-sp13_S_contig14455.3425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2386bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14455:1740..4125+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGGATTTGCTGGCGATGCTGCCGCCCGATGGGGTAAGGCTCCC
TTTTCTTTCATTTCTCTTTCCTTGAGAAGCAACGTTATGTTTTTCCACCT
TGTCGTAACCAAGCTTCACTACCGATGGCTGGTGAGTCAAAAGGTACCGA
CGTGCAAAGCTGTATCACGGAGCACGAAGAGAGTATTGCGCAGCACGCAC
CAGTGACTCGGCGCCGGCTTACGAGTTGGATCAGGGCAATGTCCGTTTCG
AAAGCGTACACGTCGGCTGCTGTCTCATCACTTTTTTCGTCAAGCGACAC
GCGGAATGCCACATACCGCGTCCAGGTCTGTGCTGGCATGTGCACGTCTA
GCTTGCCGTCGTTTGTTCCACGATTTCACGGCTACGGTTTTCACGAAACA
GTCCGCAAGCGCACCCGCAGAACTCGTTGATCGGATTCCTGTCAGGCATA
CCAGCCGATTTGCCACCGTCTGCAACAACTCCCCGCTCCTTTCACGCACG
CATGCACGCCGCCGAACCCCTCAGGCAAAATCTCCCCCTCCGGAGTTGGC
TCCAGGTACGGGGCCCCCGCTATTGTCGGGAGAAGGAAAGGAGCGCCAAC
AGACTGATGATCTCCTGTCGAGCGATGTCGGCGGGACGGCAGAGCGCGGC
AGCGCCGACAAGGACAAGGACGAGGCGTCGCCGCGGTCGGAGGGCCAAGA
AGAAGAAGCGGAACGAGTAGGCGGGGGGACAGACGCAAGTAACCGGCAGT
CTGCTGTCGCCGAGAACGTTCCTGAGACCGATGCTGAGGATAAGGTTGAG
CAGGCAGTGACTGAAAGTGGATCGGGAGGGGAAGGTCCTCCGCCATCAGA
CGAGGGGAGAGATGCTGGTGACGGGCCCACCGCCTTGGCGGAGGCAGGGG
AGACCGGCGACGTGGACTGCAGCGAAGATCCAGCGCTGCCGACGTCTCCC
TCCGGACGACAAGATCCAGGAGAAGGTGGCTCTGCTGCTTCCGATATGGT
CGAGGGACTGGGTTCGCCCTCCGGCAGCGGCAAGGAAGCCCTAGCCGAGG
TCTCGGGAAGAAGCACGCCGTCTGCGGAAGAGGAGGGAGACGCCGTCGGA
GAGCGGGGTGGCGGCCAGGCGAGCCGCGACGGCGGGGGTAGCCACGACAA
TGACAGAGACGACGGGGCCCCCGTTAGGCAAGTCTCCGACGAGCACGGCG
ACGAGACGGAAAGCGAGGAAGAGGATAACGTGTTTGCCGCGGAGCCATCG
TGCCAAGATGCGACAGGATCCGTGGGGACGGGAGTTGAGGCCGAGGAGGA
GGGAATGACGAGAGACTCAGCGAGCGAGGAGGGAAGCTGCAAGGCAGACG
AAGGCGAAGGGGTTCCTGCAGAGACAACGGCGCCAAGCACCGGGGGCGAT
GATGATGTATCGGCACCGGAAGCAGGCTTTGTGGACGATAGTGGGGGCGG
AGACACTGCTCCAGTCGGCAGCGTCGACCCCTCAGACGGACCAGGAGAGG
GGGAGCCAGAGAGCCCTGTTGAGAACCTGCCACCGCCTTCAGAGGCTCCA
GACGAACCGTTACATCAAGAAGCGGGCGAACCGGCCGGAGGGTCGGGCGG
TGGCGATTGCGCGGACCCGGACGGTGCGACAGGACAGGGGGCGGCGGAGC
CCGTCGCGGGGCCGAGCGAAGCTGCTGGAGAGGACGAACGAAGTCCCGAG
GTCCCCGAAGCTGACAGCGAGGGAGATGCGGAGGGCGGAGTTAGTGTTGT
AGGTGACGAACAGGCTGCTGCGGTAGGGCTTACGGCGAATGGAGGAAAGC
CAGGAGGAGCGGTGGACGCCGCAGAAGATCGAGGCGGTTCTTCTGAGTCG
CTCGCAGGAGAAGCTCTGTCGCCGGAAGAGGGAGCGGATGTGGAGGGGGG
GAACGGGGACCCGCAGGAGGAGGAGGAGGGTACGGAAGACGACGTGGTGT
TCTTGCAGGTGCGATGGCGGCCCTGCTCGTGCATTGTGGGGATATAGGTT
GTGACTTGTAGGCTGGGCGTGGTTATTTTTTTGTGTGTGTGTGTGTCGGG
GATCGATTGGCCGGCGCCATTGCCTCTGAATGTGGCTGAAAGCTGGTTAT
TACGTGTGTTTTAACAGCTAGCTAGCTGTTCATATCGACTTGTTCCATGA
GCCAATGGTGCCGCTTTCAATCGGCAGTCTTGCCGCTGTGTGAGTTTTTG
CTGTTCACGCGAACGTGCTCGATGGTCGGCGTGACATTCCGTGCCGTGTC
ATGTGCTGTGTGTCTTGGTTGCCTTGTTGCGGCGGAACCCGCGCCGTTTC
GCCAGTTCGAGGTGGAGGCGGAAGAGTTAGAGCTGAAGAGGCTACTGGCT
GAAGGAGAGGGGCAAGACAAGGCCGCAGATGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14455:1740..4125+

>mRNA_Ecto-sp13_S_contig14455.3425.1 ID=mRNA_Ecto-sp13_S_contig14455.3425.1|Name=mRNA_Ecto-sp13_S_contig14455.3425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14455:1740..4125+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGGATTTGCTGGCGATGCTGCCGCCCGATGGGGCAAAATCTCC
CCCTCCGGAGTTGGCTCCAGGTACGGGGCCCCCGCTATTGTCGGGAGAAG
GAAAGGAGCGCCAACAGACTGATGATCTCCTGTCGAGCGATGTCGGCGGG
ACGGCAGAGCGCGGCAGCGCCGACAAGGACAAGGACGAGGCGTCGCCGCG
GTCGGAGGGCCAAGAAGAAGAAGCGGAACGAGTAGGCGGGGGGACAGACG
CAAGTAACCGGCAGTCTGCTGTCGCCGAGAACGTTCCTGAGACCGATGCT
GAGGATAAGGTTGAGCAGGCAGTGACTGAAAGTGGATCGGGAGGGGAAGG
TCCTCCGCCATCAGACGAGGGGAGAGATGCTGGTGACGGGCCCACCGCCT
TGGCGGAGGCAGGGGAGACCGGCGACGTGGACTGCAGCGAAGATCCAGCG
CTGCCGACGTCTCCCTCCGGACGACAAGATCCAGGAGAAGGTGGCTCTGC
TGCTTCCGATATGGTCGAGGGACTGGGTTCGCCCTCCGGCAGCGGCAAGG
AAGCCCTAGCCGAGGTCTCGGGAAGAAGCACGCCGTCTGCGGAAGAGGAG
GGAGACGCCGTCGGAGAGCGGGGTGGCGGCCAGGCGAGCCGCGACGGCGG
GGGTAGCCACGACAATGACAGAGACGACGGGGCCCCCGTTAGGCAAGTCT
CCGACGAGCACGGCGACGAGACGGAAAGCGAGGAAGAGGATAACGTGTTT
GCCGCGGAGCCATCGTGCCAAGATGCGACAGGATCCGTGGGGACGGGAGT
TGAGGCCGAGGAGGAGGGAATGACGAGAGACTCAGCGAGCGAGGAGGGAA
GCTGCAAGGCAGACGAAGGCGAAGGGGTTCCTGCAGAGACAACGGCGCCA
AGCACCGGGGGCGATGATGATGTATCGGCACCGGAAGCAGGCTTTGTGGA
CGATAGTGGGGGCGGAGACACTGCTCCAGTCGGCAGCGTCGACCCCTCAG
ACGGACCAGGAGAGGGGGAGCCAGAGAGCCCTGTTGAGAACCTGCCACCG
CCTTCAGAGGCTCCAGACGAACCGTTACATCAAGAAGCGGGCGAACCGGC
CGGAGGGTCGGGCGGTGGCGATTGCGCGGACCCGGACGGTGCGACAGGAC
AGGGGGCGGCGGAGCCCGTCGCGGGGCCGAGCGAAGCTGCTGGAGAGGAC
GAACGAAGTCCCGAGGTCCCCGAAGCTGACAGCGAGGGAGATGCGGAGGG
CGGAGTTAGTGTTGTAGGTGACGAACAGGCTGCTGCGGTAGGGCTTACGG
CGAATGGAGGAAAGCCAGGAGGAGCGGTGGACGCCGCAGAAGATCGAGGC
GGTTCTTCTGAGTCGCTCGCAGGAGAAGCTCTGTCGCCGGAAGAGGGAGC
GGATGTGGAGGGGGGGAACGGGGACCCGCAGGAGGAGGAGGAGGGTACGG
AAGACGACGTGGTGTTCTTGCAGTTCGAGGTGGAGGCGGAAGAGTTAGAG
CTGAAGAGGCTACTGGCTGAAGGAGAGGGGCAAGACAAGGCCGCAGATGA
GGTG
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