mRNA_Ecto-sp13_S_contig14451.3423.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14451.3423.1
Unique NamemRNA_Ecto-sp13_S_contig14451.3423.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14451.3423.1 vs. uniprot
Match: D8LGJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.630e-20
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   13 DGLGGWVMSYVGPDGETKFKMIGPTGNCYGYSKARSGAYRLGLYPRSEGG 162
            DG+GGWVM   GPDGE KFKM GPTGNCY YSKARSGAYR GL+PRSEGG
Sbjct:    3 DGVGGWVMPEAGPDGEAKFKMTGPTGNCYDYSKARSGAYRFGLHPRSEGG 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14451.3423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGJ0_ECTSI2.630e-2082.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14451contigEcto-sp13_S_contig14451:2373..4340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size609
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_001860.1
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.2640917-CDS-Ecto-sp13_S_contig14451:2372..24881681462771.2640917-CDS-Ecto-sp13_S_contig14451:2372..2488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14451 2373..2488 +
1681462771.273875-CDS-Ecto-sp13_S_contig14451:3523..35691681462771.273875-CDS-Ecto-sp13_S_contig14451:3523..3569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14451 3524..3569 +
1681462771.2827032-CDS-Ecto-sp13_S_contig14451:3893..43401681462771.2827032-CDS-Ecto-sp13_S_contig14451:3893..4340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14451 3894..4340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14451.3423.1prot_Ecto-sp13_S_contig14451.3423.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14451 2373..4340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14451.3423.1

>prot_Ecto-sp13_S_contig14451.3423.1 ID=prot_Ecto-sp13_S_contig14451.3423.1|Name=mRNA_Ecto-sp13_S_contig14451.3423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
QSCRDGLGGWVMSYVGPDGETKFKMIGPTGNCYGYSKARSGAYRLGLYPR
SEGGGGPPLTHVAHKRRRDAAASDEAPAAKRRRCPTSSEEDHCHFFQAAG
RAGKSRTRGSPREGSGGGGGSSRCGGGRESYGGGRESYGGGSGSCGGGSG
RCCGGSGSCGGGNGRCGGGSGGHSEGRGGDSGSIGGKDSSTPSGGSSCGQ
GG*
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mRNA from alignment at Ecto-sp13_S_contig14451:2373..4340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14451.3423.1 ID=mRNA_Ecto-sp13_S_contig14451.3423.1|Name=mRNA_Ecto-sp13_S_contig14451.3423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1968bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14451:2373..4340+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAATCGTGCAGGGACGGGTTGGGCGGATGGGTGATGTCCTATGTCGGTCC
AGACGGGGAGACAAAGTTCAAGATGATCGGCCCAACTGGGAACTGCTACG
GGTACTCAAAGGCCAGGTACGTACGCACGTGGTGGCCGACCAACGATAGC
ACTCGTGGTCGATGTGACGAATACGGCATCGTCTCCTAGAATGAGCTGTG
TCCCTAAAGAGATGTGTCAGAACCACAAAAACTCTCTGCTGTAGTCAACC
CAGTGGAATATCGAGGAACGAGAGGAAACCCCGTTGACCCTCTCTTTGTC
TTGAGTCATCCCTTGTCTAGCTTTACGGCGCCCACACGCTGCCATCGAAA
GGCGAACATACATGGACCTGTGTTGTCGAATTCAAAGCACTTACGGCCAT
GACGGGCAACGCCATTGTTGGTATTGCTGTTGGTGGTGTTTATCGCTCAA
ATGGCGTTAATATCTTCTTTGTACCGGCGAGGTAGAGATCGGTGGGCGAC
TGACAAGGCTTGGGGGGTGAAAATCGGGGGGCGAAGTGACACAGCCAGTT
CGTTCTTTAGACATTGCGCCTATTTTCTCTCCAAATACGTGAGTCTCCGG
AATTAGCGTGCATAGCCCGAATGTGACTCGCTCGAGACTAGAAACACTCT
CGTCGTTAGGGATAGAGTTAAAAGCTGGTTGTGAGCGTCTGAAGCGCGTT
TTGCAAACTGGGGTAGGCGTAGCAAGAGTGTACATGGTTCCAGCGGGGAC
GAAATCTCCGGATAATTTCTCTCATCGTTTCCCATCGCGCGAGTTTTGCT
TGTGCACCGTAGATGAGCGAGAGATGACGCGGACGGCCCGCATTGTCTCG
CACCCGTCCGTGATTGCCCGGTTCACGCCGTTTTTCTTCAAGTTGGACAA
ATGTTTTCTTACCCAGTTCTGAGGGCCACCTTTGTTTGGGGTACCTCAAC
CCAGATCTATGTTCTACTAGAGCATTTCCAGCTAGAGTCACATGAAGGAA
CAGGTCTCACCTGTGGGGCGAGGACACAACCATGCCAGTGAAAGAAACAT
CAGTTTGGGCGCATGTCCAAAGCCAAGGTCAACTTTTGTTGGTGTGGTGC
AATACCTTGCTCCTGCAGACAGCCCCTTACGCATCGTATGCAACTCGCTA
GATCGGGTGCATACCGCCTAGGTTTATACCCTCGAAGCGAAGGCGGTGTT
GCAGGTGTGCCCTACTACATACCGCCCAACCGCTACAAGCGTTTGCCTAA
CCCTCGGACCGCTCGTTTGTTGCAAGTCGTGTGGCCCACCCAAAAAGTGC
TTTGCTTCGAAGTCACGCCATTGTTGCTTACCCCGCTCCCATTCGCCCAA
CCAATGTCCAGCAACATGCGCGGGGCCAAGAAGGAAATGAGCATGATTGA
ACTTGGCGAGCGGAACCTGACCTTGACAAGCGATGGCACCTGCGACCCCG
CCTGCAGTGCCGAGAAGGCAATCGCGACCCGTTTTCTGCGCGGTGTCGCA
AGCGGCATCTTTGGGAGCGAGGGAGGGCCACCGTTGACACACGTGGCGCA
CAAGCGAAGACGGGACGCCGCTGCCTCCGACGAAGCCCCAGCCGCCAAGA
GGCGTCGGTGTCCGACGTCGTCCGAGGAAGACCATTGCCATTTTTTCCAA
GCGGCTGGCAGAGCTGGAAAAAGCCGAACACGAGGCAGCCCGCGCGAAGG
AAGCGGCGGCGGCGGCGGCAGCAGCAGGTGCGGCGGCGGCCGCGAAAGCT
ATGGCGGCGGCCGCGAAAGCTACGGCGGCGGCAGCGGCAGCTGTGGCGGC
GGCAGCGGCAGATGCTGCGGCGGCAGCGGCAGCTGTGGCGGCGGCAACGG
CAGATGCGGCGGCGGCAGCGGTGGCCACAGCGAAGGTCGTGGCGGTGACA
GCGGCAGCATCGGCGGCAAAGACAGCAGCACTCCAAGCGGCGGAAGCTCT
TGCGGGCAAGGAGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14451:2373..4340+

>mRNA_Ecto-sp13_S_contig14451.3423.1 ID=mRNA_Ecto-sp13_S_contig14451.3423.1|Name=mRNA_Ecto-sp13_S_contig14451.3423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14451:2373..4340+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAATCGTGCAGGGACGGGTTGGGCGGATGGGTGATGTCCTATGTCGGTCC
AGACGGGGAGACAAAGTTCAAGATGATCGGCCCAACTGGGAACTGCTACG
GGTACTCAAAGGCCAGATCGGGTGCATACCGCCTAGGTTTATACCCTCGA
AGCGAAGGCGGTGGAGGGCCACCGTTGACACACGTGGCGCACAAGCGAAG
ACGGGACGCCGCTGCCTCCGACGAAGCCCCAGCCGCCAAGAGGCGTCGGT
GTCCGACGTCGTCCGAGGAAGACCATTGCCATTTTTTCCAAGCGGCTGGC
AGAGCTGGAAAAAGCCGAACACGAGGCAGCCCGCGCGAAGGAAGCGGCGG
CGGCGGCGGCAGCAGCAGGTGCGGCGGCGGCCGCGAAAGCTATGGCGGCG
GCCGCGAAAGCTACGGCGGCGGCAGCGGCAGCTGTGGCGGCGGCAGCGGC
AGATGCTGCGGCGGCAGCGGCAGCTGTGGCGGCGGCAACGGCAGATGCGG
CGGCGGCAGCGGTGGCCACAGCGAAGGTCGTGGCGGTGACAGCGGCAGCA
TCGGCGGCAAAGACAGCAGCACTCCAAGCGGCGGAAGCTCTTGCGGGCAA
GGAGGCTAG
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