mRNA_Ecto-sp13_S_contig14447.3419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14447.3419.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI) HSP 1 Score: 225 bits (573), Expect = 1.770e-62 Identity = 115/156 (73.72%), Postives = 128/156 (82.05%), Query Frame = 1
Query: 1 RRRAEVAWEDLKQRLPDEVLENMCAILGR-DDAEAGEAAGLRAMAAVWLRTLFDVHYDVWFRVQERTQKAVKVALLGRLTKEPVAHIRRKLTHTIGQLAEILSETAEWPELVRVTVALCDATEQSPEMKVVGLDLVNILAELCPDMMAPHRADLLQ 465
RRRAE AWED+K RLPD+VLE +CA+LG+ D E GE GLRAMAAV LRTLFD+ DVWFRVQ++TQ VK LL RLTKEPVAHIRRKLTH IGQLA I S T EWPEL+ +TVALCDA +QSPEMKVVGLDLVNILAE CP MM+PH+ LLQ
Sbjct: 25 RRRAEEAWEDMKMRLPDQVLEQVCAVLGQADGGEGGE--GLRAMAAVLLRTLFDIRSDVWFRVQQQTQAGVKATLLDRLTKEPVAHIRRKLTHAIGQLAGISSATGEWPELMALTVALCDAAQQSPEMKVVGLDLVNILAEFCPGMMSPHQDGLLQ 178
BLAST of mRNA_Ecto-sp13_S_contig14447.3419.1 vs. uniprot
Match: A0A6H5JCW6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW6_9PHAE) HSP 1 Score: 196 bits (498), Expect = 5.520e-55 Identity = 100/139 (71.94%), Postives = 112/139 (80.58%), Query Frame = 1
Query: 52 EVLENMCAILGR-DDAEAGEAAGLRAMAAVWLRTLFDVHYDVWFRVQERTQKAVKVALLGRLTKEPVAHIRRKLTHTIGQLAEILSETAEWPELVRVTVALCDATEQSPEMKVVGLDLVNILAELCPDMMAPHRADLLQ 465
+VLE +CA+LG+ D E GE GLRAMAAV LRTLFD+ DVWFRVQ+ TQ VK LL RLTKEPVAHIRRKLTH IGQLA I S T EWPEL+ +TVALCDA +QSPEMK+VGLDLVNILAE CP MM+PH+ LLQ
Sbjct: 47 QVLEQVCAVLGQADGGEVGE--GLRAMAAVLLRTLFDIRSDVWFRVQQETQAGVKATLLDRLTKEPVAHIRRKLTHAIGQLAGISSATGEWPELMALTVALCDAAQQSPEMKIVGLDLVNILAEFCPGMMSPHQDGLLQ 183
BLAST of mRNA_Ecto-sp13_S_contig14447.3419.1 vs. uniprot
Match: D7FMD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD8_ECTSI) HSP 1 Score: 127 bits (319), Expect = 8.920e-33 Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1
Query: 1 RRRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVWLRTLFDVHYDVWFRVQERTQKA 207
R+RAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAV LRTLFD DVWFRVQERTQKA
Sbjct: 29 RQRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKA 97
BLAST of mRNA_Ecto-sp13_S_contig14447.3419.1 vs. uniprot
Match: A0A835ZDS9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS9_9STRA) HSP 1 Score: 110 bits (276), Expect = 5.530e-23 Identity = 66/158 (41.77%), Postives = 88/158 (55.70%), Query Frame = 1
Query: 1 RRRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVWLRTLFDVHYDVWFRVQERTQKAVKVALLGRLTKEPVAHIRRKLTHTIGQLAEILSETAE---------WPELVRVTVALCDATEQSPEMKVVGLDLVNILAELCPDMMAPH 447
RR AE W +K+ PD V E +C IL G+RAM+AV LRTLF + D W+R+Q RTQ AV+ LL + +EPV HIR K+ H IGQLA I + + WPEL+ + ALC A + ++ GL LV+ L E ++APH
Sbjct: 22 RRAAEERWASIKKSAPDGVAEGLCMILSSTGETQPAYEGIRAMSAVLLRTLFGIRSDFWYRLQPRTQYAVREVLLRSVMEEPVRHIRLKVVHAIGQLASIAFGSRDGGGGGAAGGWPELLPLVTALC-AHGDARHLEA-GLMLVDKLCEYAHGLLAPH 177
BLAST of mRNA_Ecto-sp13_S_contig14447.3419.1 vs. uniprot
Match: F0W5X9_9STRA (Importinlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5X9_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 4.770e-9 Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 118 LRAMAAVWLRTLFDVHY-DVWFRVQERTQKAVKVALLGRLTKEPVAHIRRKLTHTIGQLA-EILSETAEWPELVRVTVALCDATEQSPEMKVVGLDLVNILAELCPDMMAPHRADLLQA 468
LR A V LR L DVH V+ R+ +TQ VK LL + KE V +RRKL HTI ++A ++ W E++++ + +EQ+ ++ G DL+ LA+ D++ P+++ L+A
Sbjct: 50 LRTSAVVLLRRLLDVHACGVYARLDAQTQTTVKSKLLEAIVKESVPSLRRKLGHTIAEVALASYTQKQAWNEILQLISEVITNSEQA-QLCETGFDLITKLADYVGDILLPYKSSFLEA 167
BLAST of mRNA_Ecto-sp13_S_contig14447.3419.1 vs. uniprot
Match: A0A024G4G4_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4G4_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 3.480e-6 Identity = 44/155 (28.39%), Postives = 77/155 (49.68%), Query Frame = 1
Query: 10 AEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVWLRTLFDVH-YDVWFRVQERTQKAVKVALLGRLTKEPVAHIRRKLTHTIGQLA-EILSETAEWPELVRVTVALCDATEQSPEMKVVGLDLVNILAELCPDMMAPHRADLLQA 468
AE +++L Q P V+ ++ A LR A V LR L D + + V+ ++ + Q VK LL + E V IRRKL HTI ++A ++ W E++++ + + Q ++ G DL+ LA+ D++ P+++ L+A
Sbjct: 19 AEERYKNLIQNDPQSVVIEFLQLIHNSPDLA-----LRTFAIVLLRRLLDANAHGVYAQLDAQAQITVKSKLLESIVSESVPSIRRKLGHTIAEVALASYTQNQTWNEVLQLISEMITNSAQD-HLRETGFDLITKLADYVGDVLLPYKSSFLEA 167 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14447.3419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14447.3419.1 >prot_Ecto-sp13_S_contig14447.3419.1 ID=prot_Ecto-sp13_S_contig14447.3419.1|Name=mRNA_Ecto-sp13_S_contig14447.3419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp MKMFEACLYDANVGVRDTALKAACSYLPGPSAVAASSLVPKMMSVLEASFback to top mRNA from alignment at Ecto-sp13_S_contig14447:2..4034+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14447.3419.1 ID=mRNA_Ecto-sp13_S_contig14447.3419.1|Name=mRNA_Ecto-sp13_S_contig14447.3419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4033bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14447:2..4034+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14447:2..4034+ >mRNA_Ecto-sp13_S_contig14447.3419.1 ID=mRNA_Ecto-sp13_S_contig14447.3419.1|Name=mRNA_Ecto-sp13_S_contig14447.3419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14447:2..4034+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |