mRNA_Ecto-sp13_S_contig14446.3418.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14446.3418.1
Unique NamemRNA_Ecto-sp13_S_contig14446.3418.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14446.3418.1 vs. uniprot
Match: A0A6H5KPS5_9PHAE (SANT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS5_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 5.030e-108
Identity = 272/371 (73.32%), Postives = 279/371 (75.20%), Query Frame = -2 
Query:  276 SPRTATPTSSDRKAPVTXXXXXXXXXXXXPGDCMDVDDVSSGRGKTTESGKGKAELGGGXXXXXXXXXXAGRKPRGLANGLAAAAATAQPSRVGAAKSPAPAGDKKSPRVVGGTTDSRKDGTXXXXXXXXXXXXXXXXXXXXXXXXNAAKPPGKPKSPLAARVVPAAAVPATNGKTRAKTPPPLVRGSAPAXXXXXXXXXXXXGEGKSRAGVLPFSSRNGVASDGLEVVGSDGTKKRLPRVLASKPVPADGSKGAKSPPSAGXXXXXXXXXVRSTSRSSTPTNXXXXXXXXXXTDATPPVPMALQQXXXXXXXXXXXXXXXXXSSPRSADGEAVLRIEEDSGADGKATKRRRRSRVATPKSGDSDHAVEAP 1388
            SPRTATPTSSDRKA +             PGD MDVD VSSGRGKTTESGKGKAELGG XXXXXXXXXXAGRKPRGLANGLAAA    +PS  G  KSPAP       RVVGGT D+RKDG                         NAAKPPGKPKSPLAARVVPAAAVPATNGKTRAKTPPPLVRGSAPAXXXXXXXXXX  GEGKS AGVLPFS RNGVASDGLEVVGSDGTKKRLPRVLASKPVPADGSKGAKSPPS  XXXXXXXXX            XXXXXXXXXX   TPPVP+A+QQ       XXXXXXXX  SSPRSADGEA+LRIEE S  DGKATKRRRRSRVATP SGDSDHAV+AP
Sbjct:   60 SPRTATPTSSDRKA-LAPSSADVDRSPTPPGDYMDVDGVSSGRGKTTESGKGKAELGGXXXXXXXXXXXAGRKPRGLANGLAAA----EPSHAGTTKSPAPXXXXXXXRVVGGTIDTRKDGNTSSCSSTKTSSTSNKMMISPQQE-NAAKPPGKPKSPLAARVVPAAAVPATNGKTRAKTPPPLVRGSAPAXXXXXXXXXX--GEGKSHAGVLPFSGRNGVASDGLEVVGSDGTKKRLPRVLASKPVPADGSKGAKSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTPPVPIAVQQQQRGRASXXXXXXXXEPSSPRSADGEALLRIEEGSSVDGKATKRRRRSRVATPTSGDSDHAVDAP 422
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BLAST of mRNA_Ecto-sp13_S_contig14446.3418.1 vs. uniprot
Match: D7FK88_ECTSI (SANT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK88_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.040e-44
Identity = 122/160 (76.25%), Postives = 125/160 (78.12%), Query Frame = -2 
Query:  471 NAAKPPGKPKSPLAARVVPAAAVPATNGKTRAKTPPPLVRGSAPAXXXXXXXXXXXXGEGKSRAGVLPFSSRNGVASDGLEVVGSDGTKKRLPRVLASKPVPADGSKGAKSPPSAGXXXXXXXXXVRSTSRSSTPTNXXXXXXXXXXTDATPPVPMALQQ 950
            NAAKPPGKPKSPLAARVVPAA+VPATNGKTRAK PPPL RGSAP             GEGKSRAGVLPFS RNGV SDGLEV GSDGTKKRLPRVLASKPVPADGSKGAKSPPS  XXXXXXXXX            XXXXXXXXXX   TPPVP+A+QQ
Sbjct:    9 NAAKPPGKPKSPLAARVVPAASVPATNGKTRAKAPPPLARGSAPVTAAAAAA-----GEGKSRAGVLPFSGRNGVVSDGLEVFGSDGTKKRLPRVLASKPVPADGSKGAKSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPVPIAVQQ 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14446.3418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPS5_9PHAE5.030e-10873.32SANT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FK88_ECTSI3.040e-4476.25SANT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14446contigEcto-sp13_S_contig14446:2112..3506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1395
Hectar predicted targeting categoryother localisation
Exons1
Cds size864
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.8401685-UTR-Ecto-sp13_S_contig14446:2111..26421681462770.8401685-UTR-Ecto-sp13_S_contig14446:2111..2642Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14446 2112..2642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.8487134-CDS-Ecto-sp13_S_contig14446:2642..35061681462770.8487134-CDS-Ecto-sp13_S_contig14446:2642..3506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14446 2643..3506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14446.3418.1prot_Ecto-sp13_S_contig14446.3418.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14446 2643..3506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14446.3418.1

>prot_Ecto-sp13_S_contig14446.3418.1 ID=prot_Ecto-sp13_S_contig14446.3418.1|Name=mRNA_Ecto-sp13_S_contig14446.3418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MLALVGVELRLVERTAAALEGAAAPALGGLLAPLEPSAGTGLDASTRGKR
FLVPSDPTTSSPSLATPLRLEKGRTPARLLPSPAAAAAAAAAGAAAGAEP
RTSGGGVFALVLPLVAGTAAAGTTLAARGLLGLPGGLAAFSCCGEIIILL
LVELVFALLLLLLLVPSFLESVVPPTTRGLFLSPAGAGDLAAPTRDGCAV
AAAAANPFANPLGFLPAPPPLLPLVVAPPPNSAFPFPDSVVLPRPELTSS
TSIQSPGGVGGRSTSADDGVTGALRSLDVGVAVRGEVV
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mRNA from alignment at Ecto-sp13_S_contig14446:2112..3506+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14446.3418.1 ID=mRNA_Ecto-sp13_S_contig14446.3418.1|Name=mRNA_Ecto-sp13_S_contig14446.3418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14446:2112..3506+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTCTTCGCCGGCGGCATGCCTGATGCTCCTGCCCCTCCCCCGCCGCC
ATTTCCTCTGCTGCTGCCGCTGCTGCCGCTGCTGCCGCTGCTGCTTCTGA
CGCCGCCACCAAGCGCTTTAGAGGAGGAAGCGGAGACGGCGGGCGTCGTT
GCCGCGGCCGCGGACACAAGAAGAGAGCGGCAATTGAGAGATGCTGCTGA
TTTCGGGGAGGATGGCCCTCCCGGCACCGCTTGTTCCGGGCCGCCGCTGT
CCGTGCGGCGGCGAGAGCGGGGCGGCGGCGCCTCCACGGCGTGATCGGAG
TCCCCGCTCTTTGGAGTTGCCACGCGGGAACGGCGACGTCGCTTGGTGGC
CTTACCATCGGCGCCGCTGTCTTCTTCGATCCTGAGCACGGCCTCGCCAT
CCGCCGATCTTGGCGAGGACGACGCGGAAGAGGAGAAGCTCGTGGTGGGA
GACGCGCGCCCCCTTTGCTGCTGCTGAAGAGCCATAGGCACCGGCGGCGT
TGCGTCCGTGTTGGCGTCGGCGTTTGTCTTGATGTTGGCGTTGGTCGGTG
TCGAGCTGCGGCTGGTCGAGCGTACCGCAGCAGCACTGGAAGGAGCCGCG
GCGCCAGCGCTCGGTGGACTCTTGGCGCCCTTGGAGCCATCCGCCGGCAC
CGGCTTGGACGCAAGCACACGCGGCAAGCGTTTCTTGGTCCCATCCGACC
CGACTACCTCGAGCCCGTCGCTAGCAACTCCATTGCGACTCGAAAAAGGA
AGAACCCCCGCGCGGCTCTTGCCTTCTCCGGCAGCAGCAGCAGCAGCAGC
AGCGGCAGGAGCGGCGGCAGGAGCAGAGCCGCGGACAAGCGGCGGTGGCG
TCTTTGCCCTGGTCTTACCGTTAGTGGCAGGCACAGCCGCAGCCGGGACG
ACCCTTGCTGCTAGAGGGCTCTTGGGTTTGCCGGGCGGCTTGGCGGCGTT
TTCTTGCTGCGGCGAGATCATCATCTTGTTGCTGGTCGAGCTGGTTTTCG
CGCTGCTGCTGCTGCTGCTGCTGGTGCCGTCCTTCCTGGAGTCGGTTGTA
CCCCCGACAACTCGCGGGCTTTTCTTATCGCCCGCGGGTGCCGGCGACTT
GGCCGCGCCAACGCGGGACGGCTGCGCCGTCGCCGCCGCCGCCGCCAATC
CGTTCGCTAACCCCCTCGGCTTCCTGCCCGCCCCCCCTCCGTTGTTACCG
CTTGTTGTTGCTCCTCCTCCCAATTCCGCCTTTCCTTTTCCCGATTCCGT
AGTCTTGCCTCGCCCCGAGCTTACGTCGTCAACGTCCATACAGTCCCCTG
GCGGCGTCGGCGGACGGTCTACATCTGCTGATGATGGCGTTACTGGTGCT
TTGCGGTCGCTAGACGTCGGCGTTGCCGTCCGAGGGGAAGTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14446:2112..3506+

>mRNA_Ecto-sp13_S_contig14446.3418.1 ID=mRNA_Ecto-sp13_S_contig14446.3418.1|Name=mRNA_Ecto-sp13_S_contig14446.3418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14446:2112..3506+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGCGTTGGTCGGTGTCGAGCTGCGGCTGGTCGAGCGTACCGCAGC
AGCACTGGAAGGAGCCGCGGCGCCAGCGCTCGGTGGACTCTTGGCGCCCT
TGGAGCCATCCGCCGGCACCGGCTTGGACGCAAGCACACGCGGCAAGCGT
TTCTTGGTCCCATCCGACCCGACTACCTCGAGCCCGTCGCTAGCAACTCC
ATTGCGACTCGAAAAAGGAAGAACCCCCGCGCGGCTCTTGCCTTCTCCGG
CAGCAGCAGCAGCAGCAGCAGCGGCAGGAGCGGCGGCAGGAGCAGAGCCG
CGGACAAGCGGCGGTGGCGTCTTTGCCCTGGTCTTACCGTTAGTGGCAGG
CACAGCCGCAGCCGGGACGACCCTTGCTGCTAGAGGGCTCTTGGGTTTGC
CGGGCGGCTTGGCGGCGTTTTCTTGCTGCGGCGAGATCATCATCTTGTTG
CTGGTCGAGCTGGTTTTCGCGCTGCTGCTGCTGCTGCTGCTGGTGCCGTC
CTTCCTGGAGTCGGTTGTACCCCCGACAACTCGCGGGCTTTTCTTATCGC
CCGCGGGTGCCGGCGACTTGGCCGCGCCAACGCGGGACGGCTGCGCCGTC
GCCGCCGCCGCCGCCAATCCGTTCGCTAACCCCCTCGGCTTCCTGCCCGC
CCCCCCTCCGTTGTTACCGCTTGTTGTTGCTCCTCCTCCCAATTCCGCCT
TTCCTTTTCCCGATTCCGTAGTCTTGCCTCGCCCCGAGCTTACGTCGTCA
ACGTCCATACAGTCCCCTGGCGGCGTCGGCGGACGGTCTACATCTGCTGA
TGATGGCGTTACTGGTGCTTTGCGGTCGCTAGACGTCGGCGTTGCCGTCC
GAGGGGAAGTTGTT
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