mRNA_Ecto-sp13_S_contig14444.3416.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14444.3416.1
Unique NamemRNA_Ecto-sp13_S_contig14444.3416.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14444.3416.1 vs. uniprot
Match: A0A6H5KRN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN6_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.230e-79
Identity = 223/257 (86.77%), Postives = 226/257 (87.94%), Query Frame = 1 
Query:  310 RLQEGLCNSIGCPGGFTPIPYAWEVECGDSCDVATCCEAFCSYHACPDSYIPIEDAGTTRCNNDNCTTEQCCVSGDTGXXXXXXXXXXGG------------VLYCNSIGCPGGYTPIPNAREVECSGDSCEVSQCCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGNTGEGQPPVGVVXXXXXXXXXXXXXXXXXXXXXXXGDCDVGQCCEAXXXXXXXXXXXXXXXXXXXXXXNNDNCTTEQCCEAH 1044
            R+ EGLCNSIGCP GFTPIPYAWEVECGDSCDVATCCEAF             EDAGTTRCNNDNCTTEQCCVSG+  XXXXXXXXXXGG            VLYCNSIGCPGGYTPIPNA EVECSGDSCEVSQCCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGNTGEGQPP GVVXXXXXXXXXXXXXXXXXXXXXXXGDCDVGQCCEAXXXXXXXXXXXXXXXXXXXXXXNND+CTTEQCCEAH
Sbjct:   10 RVHEGLCNSIGCPDGFTPIPYAWEVECGDSCDVATCCEAFXXXXXXXXXXXXXEDAGTTRCNNDNCTTEQCCVSGNXXXXXXXXXXXXGGNXXXXXXXXXXXVLYCNSIGCPGGYTPIPNAWEVECSGDSCEVSQCCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGNTGEGQPPAGVVXXXXXXXXXXXXXXXXXXXXXXXGDCDVGQCCEAXXXXXXXXXXXXXXXXXXXXXXNNDDCTTEQCCEAH 266
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BLAST of mRNA_Ecto-sp13_S_contig14444.3416.1 vs. uniprot
Match: D8LCY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY4_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 1.530e-71
Identity = 220/281 (78.29%), Postives = 223/281 (79.36%), Query Frame = 1 
Query:  202 RMPRLSLTFVTGLVALQSAAGASLRSSNGVAAADGRRLQEGLCNSIGCPGGFTPIPYAWEVECGDSCDVATCCEAFCSYHACPDSYIPIEDAGTTRCNNDNCTTEQCCVSGDTGXXXXXXXXXXGGVLYCNSIGCPGGYTPIPNAREVECSGDSCEVSQCCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGNTGEGQPPVGVVXXXXXXXXXXXXXXXXXXXXXXXGDCDVGQCCEAXXXXXXXXXXXXXXXXXXXXXXNNDNCTTEQCCEAH 1044
            RMPRLSLTFVTGLVALQSAAGASLRSSNG AAADGRRLQEGLCNSIGCPGG+TPIPYAWEVECGDSCDVATCCEAF                GT RCNNDNCTTEQCCVSGD       XXXXXGGVLYCNSI                            EA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGNTGEGQPP GVVXXXXXXXXXXXXXXXXXXXXXXXGDCDVGQCCEAXXXXXXXXXXXXXXXXXXXXXX ND+CTTE+CC  H
Sbjct:    8 RMPRLSLTFVTGLVALQSAAGASLRSSNGAAAADGRRLQEGLCNSIGCPGGYTPIPYAWEVECGDSCDVATCCEAFXXXXXXXXXXXXXXXXGTIRCNNDNCTTEQCCVSGD---GQGPXXXXXGGVLYCNSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGNTGEGQPPAGVVXXXXXXXXXXXXXXXXXXXXXXXGDCDVGQCCEAXXXXXXXXXXXXXXXXXXXXXXXNDDCTTEECCVFH 285
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BLAST of mRNA_Ecto-sp13_S_contig14444.3416.1 vs. uniprot
Match: D7G5E9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E9_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 3.700e-70
Identity = 169/206 (82.04%), Postives = 173/206 (83.98%), Query Frame = 1 
Query:  205 MPRLSLTFVTGLVALQSAAGASLRSSNGVAAADGRRLQEGLCNSIGCPGGFTPIPYAWEVECGDSCDVATCCEAFCSYHACPDSYIPIEDAGTTRCNNDNCTTEQCCVSGDT--GXXXXXXXXXXGGVLYCNSIGCPGGYTPIPNAREVECSGDSCEVSQCCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGNTGEGQ 816
            MPRLSLTFVTGLVALQSAAGASLRSSNG AAADGRRLQEGLCNSIGCPGGFTPIP AWEVECG SCDVATCCE                  GTTRC +D CTT QCCVSG+T  G  XXXXXXX GG LYCNSIGCPGGYTPIPNA EVEC  DSCEVSQCCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSG+TG+GQ
Sbjct:    1 MPRLSLTFVTGLVALQSAAGASLRSSNG-AAADGRRLQEGLCNSIGCPGGFTPIPNAWEVECGHSCDVATCCEXXXXXXXXXXXXXXXXXXGTTRCTDDYCTTPQCCVSGNTRKGEQXXXXXXXAGG-LYCNSIGCPGGYTPIPNAWEVECYDDSCEVSQCCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGDTGDGQ 204
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BLAST of mRNA_Ecto-sp13_S_contig14444.3416.1 vs. uniprot
Match: A0A6H5JPS1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.780e-13
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:  577 GVLYCNSIGCPGGYTPIPNAREVECSGDSCEVSQCCEA 690
            G  YCNSIGCPGGYTPIPNA EVEC  D CEVSQCCEA
Sbjct:    4 GKTYCNSIGCPGGYTPIPNAWEVECDDDPCEVSQCCEA 41
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14444.3416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KRN6_9PHAE1.230e-7986.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCY4_ECTSI1.530e-7178.29Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G5E9_ECTSI3.700e-7082.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPS1_9PHAE3.780e-1384.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14444contigEcto-sp13_S_contig14444:203..3926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1047
Hectar predicted targeting categoryother localisation
Exons6
Cds size1047
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14444.3416.1prot_Ecto-sp13_S_contig14444.3416.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14444 203..3926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.737368-CDS-Ecto-sp13_S_contig14444:202..4531681462770.737368-CDS-Ecto-sp13_S_contig14444:202..453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14444 203..453 -
1681462770.7464652-CDS-Ecto-sp13_S_contig14444:841..11051681462770.7464652-CDS-Ecto-sp13_S_contig14444:841..1105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14444 842..1105 -
1681462770.7550228-CDS-Ecto-sp13_S_contig14444:1534..17481681462770.7550228-CDS-Ecto-sp13_S_contig14444:1534..1748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14444 1535..1748 -
1681462770.763901-CDS-Ecto-sp13_S_contig14444:2228..22601681462770.763901-CDS-Ecto-sp13_S_contig14444:2228..2260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14444 2229..2260 -
1681462770.7735958-CDS-Ecto-sp13_S_contig14444:3192..32751681462770.7735958-CDS-Ecto-sp13_S_contig14444:3192..3275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14444 3193..3275 -
1681462770.7832394-CDS-Ecto-sp13_S_contig14444:3723..39261681462770.7832394-CDS-Ecto-sp13_S_contig14444:3723..3926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14444 3724..3926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14444.3416.1

>prot_Ecto-sp13_S_contig14444.3416.1 ID=prot_Ecto-sp13_S_contig14444.3416.1|Name=mRNA_Ecto-sp13_S_contig14444.3416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=349bp
MTRKVLVGCEDIHANHHQAKVVPTVSSANNQRVIFTTSFTLTPQPPPPHN
QPPSLLVPHPTSPSPSSRMPRLSLTFVTGLVALQSAAGASLRSSNGVAAA
DGRRLQEGLCNSIGCPGGFTPIPYAWEVECGDSCDVATCCEAFCSYHACP
DSYIPIEDAGTTRCNNDNCTTEQCCVSGDTGGGQGPPPPPPGGVLYCNSI
GCPGGYTPIPNAREVECSGDSCEVSQCCEAYCSYYACPDSYIPIEDAGTT
RCNNDDCTSEQCCVSGNTGEGQPPVGVVYCNSIGCPGGYTPIPNAWEVEC
SGDCDVGQCCEAYCSYHACPDNYIPIEDAGTTRCNNDNCTTEQCCEAH*
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mRNA from alignment at Ecto-sp13_S_contig14444:203..3926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14444.3416.1 ID=mRNA_Ecto-sp13_S_contig14444.3416.1|Name=mRNA_Ecto-sp13_S_contig14444.3416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3724bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14444:203..3926- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGGAAGGTTCTTGTAGGTTGTGAAGATATTCACGCCAATCATCA
TCAAGCAAAAGTAGTTCCGACGGTCAGCTCCGCAAATAATCAAAGAGTGA
TCTTCACCACCTCTTTCACCCTCACCCCACAGCCCCCACCACCACACAAC
CAACCACCCTCCCTACTTGTCCCACATCCGACATCTCCTTCTCCAAGCAG
CAGGTGCAGTACTCCCCTCCACTACCGTGTTCAGGCTGTGATGCACACTC
CCACATGTAAACGGGATGTTGCCCTTTCAATGCATGGCTGCACAACTAAT
AAATTGGTTATGTCGTGTATTGCTCTCCTCCTTGCGCATATAAAGCATTT
CAGAAAACATATCAATCGGATGAATGAGAGGACGATTTTGGTTGGTAGAA
ATCTCAGTCCAGCGTGCACTGCTCACGCGCGCAGCAATGAGTGGTGATGG
TTCTCCTGACTTGTGTACGCTGCTGCGGGGGCAATTCTCCCAACAAGAAC
GAGACTGACTCCTGAATCCATCCTCCCTCATGTTTCCATGTTTCCTTCCC
TTCCTTGTCTGATATATCGTCGTTGTGGTCTCATTTGGGCTCCTCAATTT
TTTCCTCTCTTCGCTTTCCTTGCGAATGTGTGCATTCCAGGAACAACACA
GGATGCCTCGCCTTTCGCTAACGTTCGTCACTGGCCTGGTGGCGCTGCAG
TCCGCGGCAGGAGCCTCTCTCCGCTCCAGCAACGGTAAGGCTTTTGTCTG
GACACGTTTTTGTGTCGAGCGGGCAAACGCAACAACATCAGTTTTCTGAC
CCGAGATCGATTGCGACCATTCTGGTGCTTGGATCCAACTCGGTATCCAC
ACATTCCGACGCACTCGGGCGCTTTCGCGATTGAGCGTGCCACGCGCCTG
AGACGCGCCAATACCCCATGCGCGATCCAACAACGTTGAGGCTTGTGACC
GAATGTTGTGTGAATCTGCAGGGTGTTTTGGCGATTGGATCCAAACAAGC
TGACGTGTCAAATGTACACCGCAGAGCCACGCGCCGTTTTCAGTTTTCAG
GATCATTTGCACGCGCTCTGTTATCTGCGCATGGACATCTAGCCCAAGAT
AAATTCAGACAATTTTCATCAAACCATGACAACATTCAGCCGTGAGTTCA
TCGCTGCATAGGCCATGCCATCAGCGGATGATCCGGGGACGAATTTTTCT
TCAAATTCTGCCTGTCGACCAGCTTGCATCCCCTGTTGGTTTCTAATGCT
TCAGTGATCCCGCAGGATTTCTCGTGCCCTTGAATGAAAAAATCATTGAC
GGCCAGACCACCACCCCTCTTGCCAGACTTTCAATTTGTCCGACAGTGGG
CAAACTTCCTCGATAAGTGTAAGGAATATCTTGTCGAGGAAAAAGTGTGC
AAGAACAATGGATTTGTCTTCATGCATGTGCTTTTTTTTCTTGGTGTGCT
AATAAAACGTGATCTTTTGATAATTGTAGCCTTCTCGTCCCCTAAGTATT
ATTGTTGTTGCCCCCCGTAAACAATGCGAGCCTCACGTCCGTTCTTGACT
GCCCACTCACTCCCATGTATTTATGTTGAAATCATTGATGTTGAAATGCA
ACAACTCACCTGTTTGTACAACGCCGCCCTCTTCCTCCCCGTCGCCCGTT
TGATGGCTTGAGGAAGGTGTTGCGGCAGCCGACGGCCGGCGCCTTCAGGT
ACGGAGAGGGGAGTTCCTCCTGTAGCAGGGTACATCCCCAACTGTTGTCA
ACTGCTGGTTAGGAGGCTTAGTCAGATGCGGAGAAACGATTATTTTCTTT
GCGGCCGTATCGTCTGGTTAGCAATCTGCTCTTGCGACGTTGTTGCTATC
GTGAAAGCGTCCAAACTCATGGTAGTCGTGAGGACAACAAAGAGTCAGTC
GAGTCCACCCCCCCTCCGCCCCGGACGATAAATTATGTACGTGTCGGTCT
CTTTTTTGCGGGAGGGTCCACGCGGATTCCTGAAGTAAAGCGATGCCTGT
AAGATCGACTTTCGGTAACGGAGGATAGCGGCGCTGACGGCAGCTTTTCT
TTCCTATTAATTGAAGTGGGGCGTGCTGGTGTCAGTTTCCCGGATTTACG
CTTGTTCTCACACCCACTCCCTCCCGAACCTCCGCTCTCCCTCCACCCCA
CCCCACACCCTCATCTCCCGCACTTCAGGAGGGGCTCTGCAACTCGATCG
GCTGCCCGGGCGGATTCACTCCCATCCCCTACGCTTGGGAGGTCGAGTGC
GGCGACTCGTGCGATGTCGCCACGTGCTGCGAAGCCTTCTGCAGCTATCA
CGCCTGCCCCGACAGCTACATCCCCATCGAGGACGCCGGCACGACCCGTT
GCAACAACGACAACTGCACCACCGAGCAGTGCTGCGTTTCTGGTGAGGCG
CGAGTCGTGGCATTTACTCTCAGGTGGTTGCCTCCCTTTGATCTCGCGGT
CACCTCGGCCTCACCGCAGTACTGTACTTGTTGAGCAGCAGTTTGTCCGG
GGGGGGCTTGCGGCGGCCATCCAACAAAGGCTTTTGAGCTGTATTCCACG
AAACATGTGAACGATGGGAACGAAAAATATGGCTTCTTGTGGCATGTATA
CGAAGACCGTGGTAAAGATAAACTAAGGCCCGAGTTGGTATGCTGACGCC
TGTCTCTACCTAGAGCAAGACCTAAGTTTGAAGGAGTCGTCAGTGAAACA
AATGAGAACGCGCCCTCTCCCCCCGCCGGTTTCTCCTGGAGTGGCGGTTA
AACAACCAAGGTGCTGGAAGCACTCCCGACAATTCTCGATCGAACCTGAA
CACCTAGTCCGTTCTGCACAGGTGACACTGGAGGGGGGCAGGGGCCGCCC
CCGCCGCCCCCTGGAGGCGTGTTGTACTGCAACTCGATCGGCTGCCCTGG
CGGATACACCCCCATCCCCAACGCGCGGGAGGTGGAGTGCTCTGGCGACT
CGTGCGAGGTCTCCCAGTGCTGCGAGGCCTACTGCAGCTACTACGCGTGC
CCCGACAGCTACATCCCCATCGAGGACGCCGGTACGACCCGTTGCAACAA
CGACGACTGCACCAGCGAACAGTGCTGCGTTTCTGGTGAGGCCCGAGTCG
TGGCGTTTGCTATTGCTGTCAACCCCACCTCGCTATTATAGGTTGAACAG
ATCATTCAGAGGTGGTTTGGTCTCGAATCGATAATGCAGCCGTATTGCAG
TGAAAAAGTATTCCTGTTTTTGTTGGGAACAAAAATGATGGCTGTAAACG
GTAGGCACAAGAGTCAACACAAACACATTGTAAGGAGATACCAAGCGTCC
TGAGTTGACATGACGGCGTCCCCATCTGGGGCAAAAATGATTCTCACACA
CATGAACGGGGTAGTCAAAGTGGAACACTAGGGCACCCCCCGCTCCTCAC
TGTCGAAGTTTCTTGATGCACACGAACAATCCTTTCTGCCGACCTAACAG
TTCTCTTGATCGGGTATTGACAGGCAACACTGGAGAGGGGCAGCCTCCGG
TGGGCGTGGTGTACTGCAACTCGATCGGCTGCCCGGGCGGATACACCCCG
ATCCCCAACGCGTGGGAGGTGGAGTGCTCCGGCGACTGCGATGTTGGCCA
GTGCTGCGAAGCCTACTGCAGCTACCACGCGTGCCCGGACAACTACATCC
CCATCGAGGACGCCGGCACGACCCGTTGCAACAACGACAACTGCACCACC
GAGCAGTGCTGCGAGGCCCACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14444:203..3926-

>mRNA_Ecto-sp13_S_contig14444.3416.1 ID=mRNA_Ecto-sp13_S_contig14444.3416.1|Name=mRNA_Ecto-sp13_S_contig14444.3416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14444:203..3926- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGGAAGGTTCTTGTAGGTTGTGAAGATATTCACGCCAATCATCA
TCAAGCAAAAGTAGTTCCGACGGTCAGCTCCGCAAATAATCAAAGAGTGA
TCTTCACCACCTCTTTCACCCTCACCCCACAGCCCCCACCACCACACAAC
CAACCACCCTCCCTACTTGTCCCACATCCGACATCTCCTTCTCCAAGCAG
CAGGATGCCTCGCCTTTCGCTAACGTTCGTCACTGGCCTGGTGGCGCTGC
AGTCCGCGGCAGGAGCCTCTCTCCGCTCCAGCAACGGTGTTGCGGCAGCC
GACGGCCGGCGCCTTCAGGAGGGGCTCTGCAACTCGATCGGCTGCCCGGG
CGGATTCACTCCCATCCCCTACGCTTGGGAGGTCGAGTGCGGCGACTCGT
GCGATGTCGCCACGTGCTGCGAAGCCTTCTGCAGCTATCACGCCTGCCCC
GACAGCTACATCCCCATCGAGGACGCCGGCACGACCCGTTGCAACAACGA
CAACTGCACCACCGAGCAGTGCTGCGTTTCTGGTGACACTGGAGGGGGGC
AGGGGCCGCCCCCGCCGCCCCCTGGAGGCGTGTTGTACTGCAACTCGATC
GGCTGCCCTGGCGGATACACCCCCATCCCCAACGCGCGGGAGGTGGAGTG
CTCTGGCGACTCGTGCGAGGTCTCCCAGTGCTGCGAGGCCTACTGCAGCT
ACTACGCGTGCCCCGACAGCTACATCCCCATCGAGGACGCCGGTACGACC
CGTTGCAACAACGACGACTGCACCAGCGAACAGTGCTGCGTTTCTGGCAA
CACTGGAGAGGGGCAGCCTCCGGTGGGCGTGGTGTACTGCAACTCGATCG
GCTGCCCGGGCGGATACACCCCGATCCCCAACGCGTGGGAGGTGGAGTGC
TCCGGCGACTGCGATGTTGGCCAGTGCTGCGAAGCCTACTGCAGCTACCA
CGCGTGCCCGGACAACTACATCCCCATCGAGGACGCCGGCACGACCCGTT
GCAACAACGACAACTGCACCACCGAGCAGTGCTGCGAGGCCCACTAA
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