mRNA_Ecto-sp13_S_contig14443.3415.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14443.3415.1
Unique NamemRNA_Ecto-sp13_S_contig14443.3415.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: A0A6H5JYF1_9PHAE (Sugar phosphate phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.470e-33
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 HVQLRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFKTG 168
            HVQLRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRR+VEAFSFFKTG
Sbjct:  116 HVQLRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRLVEAFSFFKTG 171          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: D7FH09_ECTSI (Sugar phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH09_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.740e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1
Query:    7 QLRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFKTG 168
            +LRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFKTG
Sbjct:   90 KLRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFKTG 143          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: A0A835YLK4_9STRA (Sugar phosphate phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.400e-15
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   10 LRPISEDGGPEVAEWNK-VMGPFLGMS-WLDTPWLYSEFYAYRRVVEAFSFFKTG 168
            L PI +DGGP+V EWN+ +M P+LG + WLD PWLY+EFY YRRV  AF+FF TG
Sbjct:   78 LTPIPDDGGPDVREWNESIMAPYLGAANWLDAPWLYTEFYVYRRVAAAFAFFATG 132          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: A0A7S0D193_MICPS (Fructose-bisphosphatase n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D193_MICPS)

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-13
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 HVQLRPISEDGGPEVAEWNK-VMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFKTGEETG 180
            +V LRPI +DGGP+V  WN+ ++  ++G +WLDTPWL SEFY YRR++EA  +F  G   G
Sbjct:  125 NVALRPIEDDGGPDVRYWNESLVDAWIGETWLDTPWLVSEFYFYRRILEALGYFGDGPGAG 185          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: W7TGX7_9STRA (Sugar phosphate phosphatase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGX7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.340e-12
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   10 LRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFKT 165
            L PI +DGGP++A W  +M P+   +WLD PWL +EFY YRR+++ F +F+T
Sbjct:  127 LPPIQDDGGPDLAVWEGIMAPYAQSNWLDAPWLVTEFYFYRRIIQIFEYFRT 178          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: A0A5B8MGE9_9CHLO (Sugar phosphate phosphatase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGE9_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 3.020e-11
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 VQLRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFK 162
            V LRPISEDGG + A WN+++    G SWLD  W+ +E+Y YRRV+EA  +F+
Sbjct:   74 VALRPISEDGGFDTAAWNEIVEQHAGQSWLDASWVVTEYYFYRRVLEAVGYFR 126          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: A0A7S0SIZ0_9CHLO (Sugar phosphate phosphatase (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SIZ0_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 1.820e-10
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   10 LRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVV 141
            LR I+ DGGP+V  W++++ P++G +WLDTPWL +EFY YRR+ 
Sbjct:  162 LREIAPDGGPDVDTWSQLVAPWVGRTWLDTPWLVAEFYFYRRLA 205          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: A0A090N3D1_OSTTA (Fructose-bisphosphatase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N3D1_OSTTA)

HSP 1 Score: 63.9 bits (154), Expect = 2.020e-10
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   10 LRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFKTGEET 177
            ++ I++DGGP+   W +++ P++G+SWLD PWL  EFY YRR++ A  +F     T
Sbjct:   74 IKHIADDGGPDCETWRELLEPWVGISWLDAPWLIVEFYFYRRILSAIGYFDESSPT 129          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: A0A7S3C5Q8_9CHLO (Sugar phosphate phosphatase n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C5Q8_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 5.110e-10
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   10 LRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFF 159
            LRPI++DGG +V  WN ++  + G++WL  PW+ +E+Y YRR++EA  +F
Sbjct:  128 LRPIAQDGGADVDAWNAILSQYEGLTWLTAPWVVTEYYFYRRILEACGYF 177          
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Match: D0MGG9_RHOM4 (ARMT1-like_dom domain-containing protein n=7 Tax=Rhodothermus marinus TaxID=29549 RepID=D0MGG9_RHOM4)

HSP 1 Score: 60.8 bits (146), Expect = 2.410e-9
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   10 LRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAFSFFKTG 168
            +RPI + G P++  W++ + P+LG +W   PWL++E Y YRR++EA  +F+ G
Sbjct:   65 IRPIQDPGAPDLPLWDEWVAPYLGETWASAPWLFTEHYLYRRILEATGYFQPG 117          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14443.3415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYF1_9PHAE2.470e-3398.21Sugar phosphate phosphatase n=1 Tax=Ectocarpus sp.... [more]
D7FH09_ECTSI1.740e-2998.15Sugar phosphate phosphatase n=1 Tax=Ectocarpus sil... [more]
A0A835YLK4_9STRA2.400e-1563.64Sugar phosphate phosphatase n=1 Tax=Tribonema minu... [more]
A0A7S0D193_MICPS2.100e-1352.46Fructose-bisphosphatase n=1 Tax=Micromonas pusilla... [more]
W7TGX7_9STRA1.340e-1250.00Sugar phosphate phosphatase n=4 Tax=Monodopsidacea... [more]
A0A5B8MGE9_9CHLO3.020e-1152.83Sugar phosphate phosphatase n=1 Tax=Chloropicon pr... [more]
A0A7S0SIZ0_9CHLO1.820e-1054.55Sugar phosphate phosphatase (Fragment) n=1 Tax=Man... [more]
A0A090N3D1_OSTTA2.020e-1042.86Fructose-bisphosphatase n=2 Tax=Ostreococcus tauri... [more]
A0A7S3C5Q8_9CHLO5.110e-1046.00Sugar phosphate phosphatase n=2 Tax=Chloropicon ro... [more]
D0MGG9_RHOM42.410e-941.51ARMT1-like_dom domain-containing protein n=7 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14443contigEcto-sp13_S_contig14443:4078..4257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score117.5
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D7FH09
Preferred nameHRT2
Model size180
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042221,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0097237,GO:0098754,GO:1990748
Exons1
EggNOG free text desc.protein carboxyl O-methyltransferase activity
EggNOG OGsKOG3870@1,KOG3870@2759
Ec32 ortholog descriptionDomain of unknown function DUF89
Ec32 orthologEc-26_003040.1
EC3.1.3.11
Cds size180
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.6929367-CDS-Ecto-sp13_S_contig14443:4077..42571681462770.6929367-CDS-Ecto-sp13_S_contig14443:4077..4257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14443 4078..4257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14443.3415.1prot_Ecto-sp13_S_contig14443.3415.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14443 4078..4257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14443.3415.1

>prot_Ecto-sp13_S_contig14443.3415.1 ID=prot_Ecto-sp13_S_contig14443.3415.1|Name=mRNA_Ecto-sp13_S_contig14443.3415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
HVQLRPISEDGGPEVAEWNKVMGPFLGMSWLDTPWLYSEFYAYRRVVEAF
SFFKTGEETG
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mRNA from alignment at Ecto-sp13_S_contig14443:4078..4257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14443.3415.1 ID=mRNA_Ecto-sp13_S_contig14443.3415.1|Name=mRNA_Ecto-sp13_S_contig14443.3415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14443:4078..4257+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGTGCAGCTGAGGCCCATCTCCGAGGACGGCGGGCCGGAGGTAGCGGA GTGGAACAAGGTCATGGGACCATTCCTGGGCATGAGCTGGCTGGACACGC CGTGGCTCTACTCTGAGTTTTACGCCTACCGTCGGGTGGTGGAGGCGTTT TCGTTTTTCAAGACAGGTGAGGAGACTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14443:4078..4257+

>mRNA_Ecto-sp13_S_contig14443.3415.1 ID=mRNA_Ecto-sp13_S_contig14443.3415.1|Name=mRNA_Ecto-sp13_S_contig14443.3415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14443:4078..4257+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGTGCAGCTGAGGCCCATCTCCGAGGACGGCGGGCCGGAGGTAGCGGA
GTGGAACAAGGTCATGGGACCATTCCTGGGCATGAGCTGGCTGGACACGC
CGTGGCTCTACTCTGAGTTTTACGCCTACCGTCGGGTGGTGGAGGCGTTT
TCGTTTTTCAAGACAGGTGAGGAGACTGGA
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